BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00010477
         (1406 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ...   403   e-110
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]   402   e-109
ref|XP_002308586.1| predicted protein [Populus trichocarpa] gi|2...   397   e-108
emb|CAD20832.1| sigma factor [Spinacia oleracea]                      373   e-101
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [...   372   e-100

>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
            gi|296081598|emb|CBI20603.3| unnamed protein product
            [Vitis vinifera]
          Length = 561

 Score =  403 bits (1035), Expect = e-110
 Identities = 224/465 (48%), Positives = 292/465 (62%), Gaps = 7/465 (1%)
 Frame = -1

Query: 1388 SFRGMEASYDTARISFPYNVLGETETTYNDHLRAHSCLSAA-HTLSNDYSETEFAKINIE 1212
            S +G EAS+D+ R SFP     + E+ Y D  +  +C S A  T  NDYS  E  K+ I 
Sbjct: 31   SVQGKEASFDSTRFSFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEAMKMKIG 90

Query: 1211 KSSCGGICRIMNSNIYTPTERDQLTRYQLXXXXXXXXXXXXHFGVLMNNLNMLEKTFADS 1032
            K S G + +I+N++   P   D                    F +L+ NL++LE+ FADS
Sbjct: 91   KCSHGDLFKIVNAS-QAPIGEDISASVA-----GLQASKASQFSLLLENLDILEEMFADS 144

Query: 1031 DVLRLEKDILSQLGRLGALKIFQACLSRTRSPPLVNLSVDNFN------EERQIENHVND 870
            +++RLE+DI+ QLGRLGALK+FQ CLSRT      + S D F+       E Q    V+D
Sbjct: 145  NMVRLERDIMVQLGRLGALKLFQICLSRTLK---TSTSFDLFSAPTEHIRECQTNGTVDD 201

Query: 869  HMARIVVXXXXXXXXXXXXXXXXXXXKHVHLIASPSKTNNMDRQHQKLSIPRRSSKYSGS 690
            H+ ++VV                    +++    PSKT         +S  +R+      
Sbjct: 202  HLDKVVVRSGKKEERKSKRERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRK 261

Query: 689  RPKITKNEAELTAGVKLVANLENIRMMLEKETGKAASLSSWAEAAKIDKKTLQQNLHFGW 510
            R    KNEAE++ GVKLVANLE IR  LE+E G  ASLS+WAEAA +DKK LQQ L FGW
Sbjct: 262  RLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGW 321

Query: 509  YCKDELLRRTRTLIVYIARNYRGLGVGYEDLVQAGSIGVLQGAERFDPTRGYRFSTYIQF 330
            YC+DELLR T +L++YIARNYRG+GV +ED++QAG++GVLQGAERFD T+GYRFSTY+Q+
Sbjct: 322  YCRDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQY 381

Query: 329  WIKKSILMLVERNSRGVRIPYALNKTVKKIQRARKTLCNSLGTYPDDYEIAKFTGLSLSK 150
            WI+KS+  LV R++RGV+IP+ LN+ + +IQ+ARK L  S G YPDD EIAKFTGLSL+K
Sbjct: 382  WIRKSMSTLVARHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAK 441

Query: 149  ITSAGNCLRVVGSLDKKIGDFTSVKYMELMPDTSIKGPEETVMRQ 15
            I SAGNCLRVVGS D+   D      +E  PDTSIK PEE  M+Q
Sbjct: 442  IRSAGNCLRVVGSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQQ 486


>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
          Length = 611

 Score =  402 bits (1032), Expect = e-109
 Identities = 223/463 (48%), Positives = 291/463 (62%), Gaps = 7/463 (1%)
 Frame = -1

Query: 1382 RGMEASYDTARISFPYNVLGETETTYNDHLRAHSCLSAA-HTLSNDYSETEFAKINIEKS 1206
            +G EAS+D+ R SFP     + E+ Y D  +  +C S A  T  NDYS  E  K+ I K 
Sbjct: 83   QGKEASFDSTRFSFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEAMKMKIGKC 142

Query: 1205 SCGGICRIMNSNIYTPTERDQLTRYQLXXXXXXXXXXXXHFGVLMNNLNMLEKTFADSDV 1026
            S G + +I+N++   P   D                    F +L+ NL++LE+ FADS++
Sbjct: 143  SHGDLFKIVNAS-QAPIGEDISASVA-----GLQASKASQFSLLLENLDILEEMFADSNM 196

Query: 1025 LRLEKDILSQLGRLGALKIFQACLSRTRSPPLVNLSVDNFN------EERQIENHVNDHM 864
            +RLE+DI+ QLGRLGALK+FQ CLSRT      + S D F+       E Q    V+DH+
Sbjct: 197  VRLERDIMVQLGRLGALKLFQICLSRTLK---TSTSFDLFSAPTEHIRECQTNGTVDDHL 253

Query: 863  ARIVVXXXXXXXXXXXXXXXXXXXKHVHLIASPSKTNNMDRQHQKLSIPRRSSKYSGSRP 684
             ++VV                    +++    PSKT         +S  +R+      R 
Sbjct: 254  DKVVVRSGKKEERKSKRERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRKRL 313

Query: 683  KITKNEAELTAGVKLVANLENIRMMLEKETGKAASLSSWAEAAKIDKKTLQQNLHFGWYC 504
               KNEAE++ GVKLVANLE IR  LE+E G  ASLS+WAEAA +DKK LQQ L FGWYC
Sbjct: 314  MNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYC 373

Query: 503  KDELLRRTRTLIVYIARNYRGLGVGYEDLVQAGSIGVLQGAERFDPTRGYRFSTYIQFWI 324
            +DELLR T +L++YIARNYRG+GV +ED++QAG++GVLQGAERFD T+GYRFSTY+Q+WI
Sbjct: 374  RDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWI 433

Query: 323  KKSILMLVERNSRGVRIPYALNKTVKKIQRARKTLCNSLGTYPDDYEIAKFTGLSLSKIT 144
            +KS+  LV R++RGV+IP+ LN+ + +IQ+ARK L  S G YPDD EIAKFTGLSL+KI 
Sbjct: 434  RKSMSTLVARHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIR 493

Query: 143  SAGNCLRVVGSLDKKIGDFTSVKYMELMPDTSIKGPEETVMRQ 15
            SAGNCLRVVGS D+   D      +E  PDTSIK PEE  M+Q
Sbjct: 494  SAGNCLRVVGSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQQ 536


>ref|XP_002308586.1| predicted protein [Populus trichocarpa] gi|222854562|gb|EEE92109.1|
            predicted protein [Populus trichocarpa]
          Length = 559

 Score =  397 bits (1021), Expect = e-108
 Identities = 223/470 (47%), Positives = 308/470 (65%), Gaps = 8/470 (1%)
 Frame = -1

Query: 1394 SYSFRGMEASYDTARISFPYNVLGETETTYNDH-LRAHSCLSAAHTLSNDYSETEFAKIN 1218
            S+S RGMEAS + AR+SF  +V+ E     N H  ++ +C SAA  + ND  + E  K+N
Sbjct: 29   SFSARGMEASVNQARLSF-LSVVSEEGDILNKHSFKSFACSSAAQNVENDCLQMERLKMN 87

Query: 1217 IEKSSCGGICRIMNSNIYTPTERDQLTRYQLXXXXXXXXXXXXHFGVLMNNLNMLEKTFA 1038
            ++K+S   I  +M ++  +  E    +  +L                L++NL+ LEK  A
Sbjct: 88   VDKTSHVSINNMMGNDKVSVEEEISTSHTRLRERMTSR------ISFLLDNLDTLEKLVA 141

Query: 1037 DSDVLRLEKDILSQLGRLGALKIFQACLSRT-RSPPLVNLSV---DNFNEERQIENHVND 870
            D D L+LE+DIL QLGRLGAL+ F ACLSRT ++  +++LS    +N  E +  +  + D
Sbjct: 142  DLDALKLERDILLQLGRLGALEFFNACLSRTLQTSNVLDLSAVPTENTGESKT-DGMLGD 200

Query: 869  HMARIVVXXXXXXXXXXXXXXXXXXXKH-VHLIASPSKT--NNMDRQHQKLSIPRRSSKY 699
               + VV                         ++ PSKT  NN+     K +  +R+S  
Sbjct: 201  LTGKTVVRTGKKEERKFRRERAASDNGKKTTSLSLPSKTVQNNLP----KPTFVKRTSSS 256

Query: 698  SGSRPKITKNEAELTAGVKLVANLENIRMMLEKETGKAASLSSWAEAAKIDKKTLQQNLH 519
            S  R  I +NEA++T GVK+ ++LE IR  LE+ETG+  SLS WAEA  +DKK LQQ L 
Sbjct: 257  SSRRSLIARNEAKMTRGVKVASDLERIRTTLEEETGQVVSLSCWAEATGLDKKVLQQQLQ 316

Query: 518  FGWYCKDELLRRTRTLIVYIARNYRGLGVGYEDLVQAGSIGVLQGAERFDPTRGYRFSTY 339
            FGWYC+DEL++ T +L++YIARNYRG+G+  EDL+QAG++G+LQGAERFDPTRGYRFSTY
Sbjct: 317  FGWYCRDELIKNTHSLVLYIARNYRGMGIAMEDLIQAGNLGLLQGAERFDPTRGYRFSTY 376

Query: 338  IQFWIKKSILMLVERNSRGVRIPYALNKTVKKIQRARKTLCNSLGTYPDDYEIAKFTGLS 159
            +Q+WI+KS+L +VER++RG++IPYAL++++ KIQ+ARK L NS G YPDD+E+AKFTGLS
Sbjct: 377  VQYWIRKSMLKIVERHARGIQIPYALSRSINKIQKARKALSNSHGRYPDDWEVAKFTGLS 436

Query: 158  LSKITSAGNCLRVVGSLDKKIGDFTSVKYMELMPDTSIKGPEETVMRQHL 9
            L+KI SA  CLRVV SLD+KIG+    KY E +PD SI+ PEE VMRQH+
Sbjct: 437  LAKIESAQKCLRVVASLDQKIGEGHYAKYSEFIPDMSIQNPEEAVMRQHM 486


>emb|CAD20832.1| sigma factor [Spinacia oleracea]
          Length = 548

 Score =  373 bits (957), Expect = e-101
 Identities = 208/468 (44%), Positives = 294/468 (62%), Gaps = 2/468 (0%)
 Frame = -1

Query: 1400 PLSYSFRGMEASYDTARISFPYNVLGETETTYNDHLRAHSCLSAAH-TLSNDYSETEFAK 1224
            P S SFRG E  + +AR+S       E+ET   D LR H+  S+   T+ NDYS  E   
Sbjct: 28   PCSTSFRGKELDFGSARLSLLTIGFDESETLRKDTLRPHAGSSSVPLTVENDYSNLE--- 84

Query: 1223 INIEKSSCGGICRIMNSNIYTPTERDQLTRYQLXXXXXXXXXXXXHFGVLMNNLNMLEKT 1044
              I K SC  +  I ++ + +  +     R               HF  LM N+N+LE  
Sbjct: 85   TTISKRSCKDL--ISDTEVLSDRDVSVYVR-------SVQSCSASHFHTLMANINLLENK 135

Query: 1043 FADSDVLRLEKDILSQLGRLGALKIFQACLSRTRSPPLVNLS-VDNFNEERQIENHVNDH 867
             +DS++L+LEKDIL QLGRLGAL++F ACLSR     ++++S +     E    N   D+
Sbjct: 136  VSDSELLKLEKDILVQLGRLGALQLFHACLSR-----IIDMSDLPGLITEDGKANVRKDN 190

Query: 866  MARIVVXXXXXXXXXXXXXXXXXXXKHVHLIASPSKTNNMDRQHQKLSIPRRSSKYSGSR 687
              +  +                         A  S+++     H  +S   + +K  G R
Sbjct: 191  ELKKKLVFSKRKEERKLRQERRLQASTSKRCACKSESSIESSIHHVVSTAAKKTKARGRR 250

Query: 686  PKITKNEAELTAGVKLVANLENIRMMLEKETGKAASLSSWAEAAKIDKKTLQQNLHFGWY 507
              I KNEAE++ G+K+VA LE +++ LEKETGKA SL+ WAEAA ID+K LQ +LHFGWY
Sbjct: 251  AIIAKNEAEMSRGIKVVAQLEKVKLTLEKETGKAVSLNCWAEAAGIDEKVLQHDLHFGWY 310

Query: 506  CKDELLRRTRTLIVYIARNYRGLGVGYEDLVQAGSIGVLQGAERFDPTRGYRFSTYIQFW 327
            C+DELL+  R+L++Y++R YRGLGV +EDL+QAG+IG+LQGAERFD TRGY+FSTY+Q+W
Sbjct: 311  CRDELLKSGRSLVLYLSRYYRGLGVAHEDLMQAGNIGILQGAERFDHTRGYQFSTYVQYW 370

Query: 326  IKKSILMLVERNSRGVRIPYALNKTVKKIQRARKTLCNSLGTYPDDYEIAKFTGLSLSKI 147
            I+K++  LV R+ RG+++P  L+ T+ ++Q+ARK L  S G +PDD E++K TGLSL KI
Sbjct: 371  IRKAMSQLVSRHGRGIKVPTTLSTTINRVQKARKILKRSQGKHPDDVEVSKSTGLSLDKI 430

Query: 146  TSAGNCLRVVGSLDKKIGDFTSVKYMELMPDTSIKGPEETVMRQHLIN 3
             SA NCLR+VGSLD+K+G F ++KY+E  PDT+++ PE+TVM+QH+ N
Sbjct: 431  KSADNCLRIVGSLDQKVGHFINMKYLECTPDTALEMPEKTVMKQHMRN 478


>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 560

 Score =  372 bits (956), Expect = e-100
 Identities = 206/472 (43%), Positives = 295/472 (62%), Gaps = 5/472 (1%)
 Frame = -1

Query: 1406 SWPLSYSFRGMEASYDTARISFPYNVLGETETTYNDHLRAHSCLSAAHTLSNDYSETEFA 1227
            S P S   RG EA+   +R+SF   +  E +  + D L+ ++   A  T+ N++S+ E  
Sbjct: 26   SSPSSSFVRGREATSYQSRLSFLSVISEEGDIAHRDPLKTYAYSYAVQTVENEHSQGEGF 85

Query: 1226 KINIEKSSCGGICRIMNSNIYTPTERDQLTRYQLXXXXXXXXXXXXHFGVLMNNLNMLEK 1047
            K+N  K S  G+  I ++ +    +        +             F +L+ NLN+LE+
Sbjct: 86   KVNFGKRSHFGLNIIGDAEVSLKED--------IFVSPSSTKERTSRFSLLLENLNILEQ 137

Query: 1046 TFADSDVLRLEKDILSQLGRLGALKIFQACLSRTRSPPLVNLSVDNFNEERQIENHVN-- 873
            +FADSD  +LE+DIL QLG+LGALK+F  CL+RT     V L V + + E   E ++N  
Sbjct: 138  SFADSDASKLEEDILLQLGKLGALKLFNTCLTRTLETTNV-LEVSDVHTEIIGECNINGT 196

Query: 872  --DHMARIVVXXXXXXXXXXXXXXXXXXXKHVH-LIASPSKTNNMDRQHQKLSIPRRSSK 702
              ++  ++VV                    H    +  PS+      +   +S  +++SK
Sbjct: 197  SINNQIKVVVHTAKKEERKSRRERASARKGHKSPSLPLPSRPIQSGSEKPTVSSGKKASK 256

Query: 701  YSGSRPKITKNEAELTAGVKLVANLENIRMMLEKETGKAASLSSWAEAAKIDKKTLQQNL 522
                R  I +NEAE+  G+K++A+LE IR  LE+ET +  SLS WAEAA +D K LQQ L
Sbjct: 257  SKSRRLIIARNEAEMARGIKVLADLEKIRTTLEEETERVVSLSCWAEAAGLDVKVLQQQL 316

Query: 521  HFGWYCKDELLRRTRTLIVYIARNYRGLGVGYEDLVQAGSIGVLQGAERFDPTRGYRFST 342
             FGWYC+DEL++ TR+L++Y ARNYRG G+  EDL+QAG++GVL+GAERFD TRGYRFST
Sbjct: 317  SFGWYCRDELIKSTRSLVLYFARNYRGTGIALEDLLQAGNLGVLEGAERFDHTRGYRFST 376

Query: 341  YIQFWIKKSILMLVERNSRGVRIPYALNKTVKKIQRARKTLCNSLGTYPDDYEIAKFTGL 162
            Y+Q+WI+KS+  +V R +RG++IP  L++ + +IQ+ARK L  S G YPDD EIAK+TGL
Sbjct: 377  YVQYWIRKSMSKIVSRLARGIQIPCTLSRAIYQIQKARKALTTSNGKYPDDDEIAKYTGL 436

Query: 161  SLSKITSAGNCLRVVGSLDKKIGDFTSVKYMELMPDTSIKGPEETVMRQHLI 6
            SL+KI SA  CLRVVGS+D+KIG+  + KY+E +PDTS++ PEE VMRQH+I
Sbjct: 437  SLAKIESASRCLRVVGSIDQKIGESLNAKYLEFLPDTSVQSPEEVVMRQHMI 488