BLASTX nr result

ID: Bupleurum21_contig00010387 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00010387
         (848 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24978.3| unnamed protein product [Vitis vinifera]              222   9e-56
ref|XP_002271688.2| PREDICTED: F-box/WD-40 repeat-containing pro...   217   2e-54
emb|CAN61154.1| hypothetical protein VITISV_013775 [Vitis vinifera]   215   9e-54
ref|XP_002314059.1| predicted protein [Populus trichocarpa] gi|2...   207   2e-51
ref|XP_003538059.1| PREDICTED: F-box/WD-40 repeat-containing pro...   206   4e-51

>emb|CBI24978.3| unnamed protein product [Vitis vinifera]
          Length = 435

 Score =  222 bits (565), Expect = 9e-56
 Identities = 110/203 (54%), Positives = 141/203 (69%)
 Frame = +2

Query: 2   KWSKIVKIQDGPVTCIALNDAQMXXXXXXXXXXXVSDLSSAQRVATLKSYGSAGISALCV 181
           K S+I+++  GPV C+AL+D Q            +S LSS QR+A L+S  S GI  LC 
Sbjct: 228 KCSRIIRMHSGPVRCLALSDDQCIISGSSLGSITISGLSSDQRIAKLRSTDSTGIRTLCF 287

Query: 182 NPSSPLIYAGSTAGHAYCWDLRTMRNLWQTRVSPNVIYSMHHLRNHTSTLVVGGIDGVLR 361
           NP S L+++GSTAG+A CWDLRTMR LW+ R+SPNVIYSM HL + T TLV GGIDGVLR
Sbjct: 288 NPRSHLVFSGSTAGYASCWDLRTMRPLWENRISPNVIYSMQHLCSDTHTLVAGGIDGVLR 347

Query: 362 IVDENNGKILSSCILNQNSSDQSIRAETSSKVYAVRKKGRRIAENTRIELMPKALRPSIN 541
           I+D+N GK++S C+++ + +  S +   S      RKKGRRI E+T I+ +PK+ RP I 
Sbjct: 348 ILDQNTGKVVSGCVMDDSPAPTSSQKTDS---IIERKKGRRITEDTLIDSIPKSSRPPIT 404

Query: 542 CLAVGFQKVVTTHEDNYIRVWKF 610
           CLAVG QKVVTTH   YIR+WKF
Sbjct: 405 CLAVGMQKVVTTHNGKYIRMWKF 427


>ref|XP_002271688.2| PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like
           [Vitis vinifera]
          Length = 421

 Score =  217 bits (553), Expect = 2e-54
 Identities = 110/204 (53%), Positives = 141/204 (69%), Gaps = 1/204 (0%)
 Frame = +2

Query: 2   KWSKIVKIQDGPVTCIALNDAQMXXXXXXXXXXXVSDLSSAQRVATLKSYGSAG-ISALC 178
           K S+I+++  GPV C+AL+D Q            +S LSS QR+A L+S  S G I  LC
Sbjct: 213 KCSRIIRMHSGPVRCLALSDDQCIISGSSLGSITISGLSSDQRIAKLRSTDSTGGIRTLC 272

Query: 179 VNPSSPLIYAGSTAGHAYCWDLRTMRNLWQTRVSPNVIYSMHHLRNHTSTLVVGGIDGVL 358
            NP S L+++GSTAG+A CWDLRTMR LW+ R+SPNVIYSM HL + T TLV GGIDGVL
Sbjct: 273 FNPRSHLVFSGSTAGYASCWDLRTMRPLWENRISPNVIYSMQHLCSDTHTLVAGGIDGVL 332

Query: 359 RIVDENNGKILSSCILNQNSSDQSIRAETSSKVYAVRKKGRRIAENTRIELMPKALRPSI 538
           RI+D+N GK++S C+++ + +  S +   S      RKKGRRI E+T I+ +PK+ RP I
Sbjct: 333 RILDQNTGKVVSGCVMDDSPAPTSSQKTDS---IIERKKGRRITEDTLIDSIPKSSRPPI 389

Query: 539 NCLAVGFQKVVTTHEDNYIRVWKF 610
            CLAVG QKVVTTH   YIR+WKF
Sbjct: 390 TCLAVGMQKVVTTHNGKYIRMWKF 413


>emb|CAN61154.1| hypothetical protein VITISV_013775 [Vitis vinifera]
          Length = 471

 Score =  215 bits (548), Expect = 9e-54
 Identities = 109/204 (53%), Positives = 140/204 (68%), Gaps = 1/204 (0%)
 Frame = +2

Query: 2   KWSKIVKIQDGPVTCIALNDAQMXXXXXXXXXXXVSDLSSAQRVATLKSYGSAG-ISALC 178
           K S+I+++  GPV C+AL+D Q            +S LSS QR+A L+S  S G I  LC
Sbjct: 263 KCSRIIRMHSGPVRCLALSDDQCIISGSSLGSITISGLSSDQRIAKLRSTDSTGGIRTLC 322

Query: 179 VNPSSPLIYAGSTAGHAYCWDLRTMRNLWQTRVSPNVIYSMHHLRNHTSTLVVGGIDGVL 358
            NP S L+++GSTAG+A CWDLRTMR LW+ R+SPN IYSM HL + T TLV GGIDGVL
Sbjct: 323 FNPRSHLVFSGSTAGYASCWDLRTMRPLWENRISPNXIYSMQHLCSDTHTLVAGGIDGVL 382

Query: 359 RIVDENNGKILSSCILNQNSSDQSIRAETSSKVYAVRKKGRRIAENTRIELMPKALRPSI 538
           RI+D+N GK++S C+++ + +  S +   S      RKKGRRI E+T I+ +PK+ RP I
Sbjct: 383 RILDQNTGKVVSGCVMDDSPAPTSSQKTDS---IIERKKGRRITEDTLIDSIPKSSRPPI 439

Query: 539 NCLAVGFQKVVTTHEDNYIRVWKF 610
            CLAVG QKVVTTH   YIR+WKF
Sbjct: 440 TCLAVGMQKVVTTHNGKYIRMWKF 463


>ref|XP_002314059.1| predicted protein [Populus trichocarpa] gi|222850467|gb|EEE88014.1|
           predicted protein [Populus trichocarpa]
          Length = 444

 Score =  207 bits (527), Expect = 2e-51
 Identities = 104/203 (51%), Positives = 142/203 (69%)
 Frame = +2

Query: 2   KWSKIVKIQDGPVTCIALNDAQMXXXXXXXXXXXVSDLSSAQRVATLKSYGSAGISALCV 181
           K S+IV++   PVTC++L++ Q+           +S LSS QRVATL+   S GI +LC 
Sbjct: 239 KCSRIVRMHTEPVTCLSLSEDQLIISGSSLGRITISGLSSDQRVATLRPTDSTGIKSLCF 298

Query: 182 NPSSPLIYAGSTAGHAYCWDLRTMRNLWQTRVSPNVIYSMHHLRNHTSTLVVGGIDGVLR 361
           NP S  ++AG+TAG+A CWDLRTMR LW+TRVSPNV+YS+ H+R+ TSTLVVGGIDGVLR
Sbjct: 299 NPVSHQVFAGTTAGYASCWDLRTMRQLWKTRVSPNVVYSLQHMRSDTSTLVVGGIDGVLR 358

Query: 362 IVDENNGKILSSCILNQNSSDQSIRAETSSKVYAVRKKGRRIAENTRIELMPKALRPSIN 541
           ++D+N G++LSS +++  +S  S    T   +   RK G+R+  +  I+ +PK +RP I 
Sbjct: 359 VLDQNTGEVLSSYVMDHGTSTSS--GYTHGVI--ERKIGKRLPYDYNIDRIPKTVRPPIT 414

Query: 542 CLAVGFQKVVTTHEDNYIRVWKF 610
           CLAVG QKV+TTH    IR+WKF
Sbjct: 415 CLAVGMQKVITTHNIKNIRMWKF 437


>ref|XP_003538059.1| PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like
           [Glycine max]
          Length = 444

 Score =  206 bits (525), Expect = 4e-51
 Identities = 101/206 (49%), Positives = 140/206 (67%), Gaps = 2/206 (0%)
 Frame = +2

Query: 2   KWSKIVKIQDGPVTCIALNDAQMXXXXXXXXXXXVSDLSSAQRVATLKSYGSAGISALCV 181
           K S+I+++   P+TC+ L++ Q+           +SD SS Q+VATL+S  + GI  LC 
Sbjct: 238 KCSQIIRMHYAPITCLCLSEDQLIMSGSTSGSITMSDPSSVQQVATLRSSDARGIRTLCF 297

Query: 182 NPSSPLIYAGSTAGHAYCWDLRTMRNLWQTRVSPNVIYSMHHLRNHTSTLVVGGIDGVLR 361
           NPSS L++AGS  G+AYCWDLRT + LW  RVSPNVIYS+ H+ + TSTL VGGIDG+LR
Sbjct: 298 NPSSQLLFAGSAVGYAYCWDLRTRKLLWSNRVSPNVIYSLQHMHSDTSTLAVGGIDGILR 357

Query: 362 IVDENNGKILSSCILNQNSSDQSIRAETSSKVYAVRKKGRRIAEN--TRIELMPKALRPS 535
           ++++N+G ++SSC++     D+ +    S      R+KG R+ EN    I+L+PK  RPS
Sbjct: 358 LLNQNDGSVVSSCVM----GDKLLSTFQSPSGSIQRRKGSRLPENIYINIDLIPKTARPS 413

Query: 536 INCLAVGFQKVVTTHEDNYIRVWKFK 613
           I CLAVG +K+VTTH  N IR+WKFK
Sbjct: 414 ITCLAVGMKKIVTTHNTNDIRLWKFK 439


Top