BLASTX nr result
ID: Bupleurum21_contig00010278
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00010278
(298 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containi... 140 8e-32
emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera] 140 8e-32
ref|XP_002528456.1| pentatricopeptide repeat-containing protein,... 140 1e-31
ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containi... 127 7e-28
ref|XP_002311156.1| predicted protein [Populus trichocarpa] gi|2... 127 7e-28
>ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Vitis vinifera]
Length = 1005
Score = 140 bits (354), Expect = 8e-32
Identities = 67/99 (67%), Positives = 81/99 (81%)
Frame = -1
Query: 298 DMYAKCGSLAAAEYLFYKTEFIKDEVSWNTMIAGYVQNGHAQDAIYVFNQMKLEAFIPNL 119
DMYAKCGSL +AE+LF KT+F KDEV+WN +IA Y+QNGHA++AI F+QM+LE F PN
Sbjct: 574 DMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNS 633
Query: 118 VTIVSILPATAYLAALKEGMALHAQIVQMGHHSNAIVGN 2
VT VS+LPA AYLAA +EGMA HA I+QMG SN +VGN
Sbjct: 634 VTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGN 672
Score = 71.2 bits (173), Expect = 8e-11
Identities = 38/97 (39%), Positives = 60/97 (61%)
Frame = -1
Query: 295 MYAKCGSLAAAEYLFYKTEFIKDEVSWNTMIAGYVQNGHAQDAIYVFNQMKLEAFIPNLV 116
MYAKCG A+ LF+ + +D V+W+ +IA VQ G+ ++A+ +F +M+ + PN V
Sbjct: 373 MYAKCGETEKAKQLFWGLQG-RDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRV 431
Query: 115 TIVSILPATAYLAALKEGMALHAQIVQMGHHSNAIVG 5
T++SILPA A L+ LK G ++H V+ S+ G
Sbjct: 432 TLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTG 468
Score = 71.2 bits (173), Expect = 8e-11
Identities = 39/98 (39%), Positives = 58/98 (59%)
Frame = -1
Query: 295 MYAKCGSLAAAEYLFYKTEFIKDEVSWNTMIAGYVQNGHAQDAIYVFNQMKLEAFIPNLV 116
MYAKCG AA F + +D V+WN++I GY Q G +AI +F +++L A P+
Sbjct: 474 MYAKCGFFTAALTTFNRMSS-RDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAG 532
Query: 115 TIVSILPATAYLAALKEGMALHAQIVQMGHHSNAIVGN 2
T+V ++PA A L L +G +H IV++G S+ V N
Sbjct: 533 TMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKN 570
Score = 62.4 bits (150), Expect = 4e-08
Identities = 33/79 (41%), Positives = 48/79 (60%)
Frame = -1
Query: 298 DMYAKCGSLAAAEYLFYKTEFIKDEVSWNTMIAGYVQNGHAQDAIYVFNQMKLEAFIPNL 119
DMYAKCG L +E LF + + KD VSWN M++GY +GH AI +F+ M+ +
Sbjct: 676 DMYAKCGQLDYSEKLFNEMDH-KDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDS 734
Query: 118 VTIVSILPATAYLAALKEG 62
V+ VS+L A + ++EG
Sbjct: 735 VSFVSVLSACRHAGLVEEG 753
Score = 58.5 bits (140), Expect = 5e-07
Identities = 34/97 (35%), Positives = 54/97 (55%)
Frame = -1
Query: 298 DMYAKCGSLAAAEYLFYKTEFIKDEVSWNTMIAGYVQNGHAQDAIYVFNQMKLEAFIPNL 119
D+Y+KCG + A +F + +D+VSW TM+AGY NG + + +F++MKL N
Sbjct: 271 DLYSKCGDVDVARRVFDQM-VDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINK 329
Query: 118 VTIVSILPATAYLAALKEGMALHAQIVQMGHHSNAIV 8
V+ VS A A L++G +H +Q S+ +V
Sbjct: 330 VSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILV 366
>emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
Length = 1005
Score = 140 bits (354), Expect = 8e-32
Identities = 67/99 (67%), Positives = 81/99 (81%)
Frame = -1
Query: 298 DMYAKCGSLAAAEYLFYKTEFIKDEVSWNTMIAGYVQNGHAQDAIYVFNQMKLEAFIPNL 119
DMYAKCGSL +AE+LF KT+F KDEV+WN +IA Y+QNGHA++AI F+QM+LE F PN
Sbjct: 574 DMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNS 633
Query: 118 VTIVSILPATAYLAALKEGMALHAQIVQMGHHSNAIVGN 2
VT VS+LPA AYLAA +EGMA HA I+QMG SN +VGN
Sbjct: 634 VTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGN 672
Score = 71.2 bits (173), Expect = 8e-11
Identities = 38/97 (39%), Positives = 60/97 (61%)
Frame = -1
Query: 295 MYAKCGSLAAAEYLFYKTEFIKDEVSWNTMIAGYVQNGHAQDAIYVFNQMKLEAFIPNLV 116
MYAKCG A+ LF+ + +D V+W+ +IA VQ G+ ++A+ +F +M+ + PN V
Sbjct: 373 MYAKCGETEKAKQLFWGLQG-RDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRV 431
Query: 115 TIVSILPATAYLAALKEGMALHAQIVQMGHHSNAIVG 5
T++SILPA A L+ LK G ++H V+ S+ G
Sbjct: 432 TLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTG 468
Score = 71.2 bits (173), Expect = 8e-11
Identities = 39/98 (39%), Positives = 58/98 (59%)
Frame = -1
Query: 295 MYAKCGSLAAAEYLFYKTEFIKDEVSWNTMIAGYVQNGHAQDAIYVFNQMKLEAFIPNLV 116
MYAKCG AA F + +D V+WN++I GY Q G +AI +F +++L A P+
Sbjct: 474 MYAKCGFFTAALTTFNRMSS-RDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAG 532
Query: 115 TIVSILPATAYLAALKEGMALHAQIVQMGHHSNAIVGN 2
T+V ++PA A L L +G +H IV++G S+ V N
Sbjct: 533 TMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKN 570
Score = 62.8 bits (151), Expect = 3e-08
Identities = 33/79 (41%), Positives = 48/79 (60%)
Frame = -1
Query: 298 DMYAKCGSLAAAEYLFYKTEFIKDEVSWNTMIAGYVQNGHAQDAIYVFNQMKLEAFIPNL 119
DMYAKCG L +E LF + + KD VSWN M++GY +GH AI +F+ M+ +
Sbjct: 676 DMYAKCGQLXYSEKLFNEMDH-KDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDS 734
Query: 118 VTIVSILPATAYLAALKEG 62
V+ VS+L A + ++EG
Sbjct: 735 VSFVSVLSACRHXGLVEEG 753
Score = 58.5 bits (140), Expect = 5e-07
Identities = 34/97 (35%), Positives = 54/97 (55%)
Frame = -1
Query: 298 DMYAKCGSLAAAEYLFYKTEFIKDEVSWNTMIAGYVQNGHAQDAIYVFNQMKLEAFIPNL 119
D+Y+KCG + A +F + +D+VSW TM+AGY NG + + +F++MKL N
Sbjct: 271 DLYSKCGDVDVARRVFDQM-VDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINK 329
Query: 118 VTIVSILPATAYLAALKEGMALHAQIVQMGHHSNAIV 8
V+ VS A A L++G +H +Q S+ +V
Sbjct: 330 VSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILV 366
>ref|XP_002528456.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223532132|gb|EEF33939.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 664
Score = 140 bits (352), Expect = 1e-31
Identities = 69/99 (69%), Positives = 80/99 (80%)
Frame = -1
Query: 298 DMYAKCGSLAAAEYLFYKTEFIKDEVSWNTMIAGYVQNGHAQDAIYVFNQMKLEAFIPNL 119
DMYAKCGSLA AE+LF +TEF KDEVSWN +IAGYV N HA++A +F QMKLE F PNL
Sbjct: 459 DMYAKCGSLANAEFLFKRTEFTKDEVSWNALIAGYVHNEHAKEAFSLFCQMKLEHFQPNL 518
Query: 118 VTIVSILPATAYLAALKEGMALHAQIVQMGHHSNAIVGN 2
VT VS+ PA A L+ALKEGMALHA I++MG SN +VGN
Sbjct: 519 VTFVSVFPAVARLSALKEGMALHACIMRMGFQSNVLVGN 557
Score = 70.5 bits (171), Expect = 1e-10
Identities = 36/97 (37%), Positives = 62/97 (63%)
Frame = -1
Query: 295 MYAKCGSLAAAEYLFYKTEFIKDEVSWNTMIAGYVQNGHAQDAIYVFNQMKLEAFIPNLV 116
MYAKCG+L A+ LF + +KD V+W+ +I VQ+ +A+DA+ +F M+ + N V
Sbjct: 258 MYAKCGNLDKAKQLFQGLK-VKDLVAWSAIIDALVQSRYAEDALSLFRDMQNDFLKANNV 316
Query: 115 TIVSILPATAYLAALKEGMALHAQIVQMGHHSNAIVG 5
T++S+LPA A L +L+ G ++H ++ S+ ++G
Sbjct: 317 TLLSVLPACADLMSLRLGKSVHCYAIKADFDSDILIG 353
Score = 58.5 bits (140), Expect = 5e-07
Identities = 30/79 (37%), Positives = 48/79 (60%)
Frame = -1
Query: 298 DMYAKCGSLAAAEYLFYKTEFIKDEVSWNTMIAGYVQNGHAQDAIYVFNQMKLEAFIPNL 119
DMYAKCG L +E+LF++ + K+ VSWN M+AGY +G AI +F+ M+ +
Sbjct: 561 DMYAKCGQLHNSEHLFHEMKN-KNAVSWNVMLAGYAVHGQGYHAIELFSLMQKSHIQADS 619
Query: 118 VTIVSILPATAYLAALKEG 62
++ +S+L A + + EG
Sbjct: 620 LSFLSVLSACRHSGLIDEG 638
>ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Glycine max]
Length = 887
Score = 127 bits (320), Expect = 7e-28
Identities = 61/99 (61%), Positives = 76/99 (76%)
Frame = -1
Query: 298 DMYAKCGSLAAAEYLFYKTEFIKDEVSWNTMIAGYVQNGHAQDAIYVFNQMKLEAFIPNL 119
DMYAKCGSL AE LF+ + +KDEVSWN MIAGY+ NG A +AI FNQMKLE+ PNL
Sbjct: 573 DMYAKCGSLCTAENLFHLNKHVKDEVSWNVMIAGYLHNGCANEAISTFNQMKLESVRPNL 632
Query: 118 VTIVSILPATAYLAALKEGMALHAQIVQMGHHSNAIVGN 2
VT V+ILPA +YL+ L+E MA HA I++MG S+ ++GN
Sbjct: 633 VTFVTILPAVSYLSILREAMAFHACIIRMGFISSTLIGN 671
Score = 63.5 bits (153), Expect = 2e-08
Identities = 31/97 (31%), Positives = 59/97 (60%)
Frame = -1
Query: 298 DMYAKCGSLAAAEYLFYKTEFIKDEVSWNTMIAGYVQNGHAQDAIYVFNQMKLEAFIPNL 119
DMY+KCG + A +F + ++KD++SW TM+AGYV +G + + + ++MK + N
Sbjct: 270 DMYSKCGEVKLAHQIFDQM-WVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMNK 328
Query: 118 VTIVSILPATAYLAALKEGMALHAQIVQMGHHSNAIV 8
+++V+ + A L++G +H +Q+G S+ +V
Sbjct: 329 ISVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVV 365
Score = 57.4 bits (137), Expect = 1e-06
Identities = 33/92 (35%), Positives = 52/92 (56%)
Frame = -1
Query: 295 MYAKCGSLAAAEYLFYKTEFIKDEVSWNTMIAGYVQNGHAQDAIYVFNQMKLEAFIPNLV 116
MY +C S A LF + + KD V+WNT+I G+ + G + A+ +F +++L P+
Sbjct: 473 MYTRCKSFMYAMTLFNRMHY-KDVVAWNTLINGFTKCGDPRLALEMFLRLQLSGVQPDSG 531
Query: 115 TIVSILPATAYLAALKEGMALHAQIVQMGHHS 20
T+VS+L A A L L G+ H I++ G S
Sbjct: 532 TMVSLLSACALLDDLYLGICFHGNIIKNGIES 563
>ref|XP_002311156.1| predicted protein [Populus trichocarpa] gi|222850976|gb|EEE88523.1|
predicted protein [Populus trichocarpa]
Length = 535
Score = 127 bits (320), Expect = 7e-28
Identities = 61/99 (61%), Positives = 76/99 (76%)
Frame = -1
Query: 298 DMYAKCGSLAAAEYLFYKTEFIKDEVSWNTMIAGYVQNGHAQDAIYVFNQMKLEAFIPNL 119
DMYAKCGSL+ AE+LF++T KDEVSWN MIAGY+ +GHA DA F QMKLE PN+
Sbjct: 233 DMYAKCGSLSGAEFLFHRTGCRKDEVSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQPNI 292
Query: 118 VTIVSILPATAYLAALKEGMALHAQIVQMGHHSNAIVGN 2
VTIV++LPA A+L+AL+ GM LHA +++MG S VGN
Sbjct: 293 VTIVTVLPAVAHLSALRAGMTLHAYVIRMGFQSKTPVGN 331
Score = 72.0 bits (175), Expect = 5e-11
Identities = 40/96 (41%), Positives = 55/96 (57%)
Frame = -1
Query: 295 MYAKCGSLAAAEYLFYKTEFIKDEVSWNTMIAGYVQNGHAQDAIYVFNQMKLEAFIPNLV 116
MYAKCG A A LF + KD V+WN MI GY Q G A+ +F++++L PN
Sbjct: 133 MYAKCGFFALALTLFNRMP-CKDVVTWNAMINGYAQIGEPFPALEMFHKLQLSELNPNSG 191
Query: 115 TIVSILPATAYLAALKEGMALHAQIVQMGHHSNAIV 8
T+V +LPA A L L +G +H +I++ G S V
Sbjct: 192 TMVGLLPAFALLNDLDQGSCIHGKIIKCGFESECHV 227
Score = 65.9 bits (159), Expect = 3e-09
Identities = 35/97 (36%), Positives = 60/97 (61%)
Frame = -1
Query: 295 MYAKCGSLAAAEYLFYKTEFIKDEVSWNTMIAGYVQNGHAQDAIYVFNQMKLEAFIPNLV 116
MYA+CG + A+ LF + + +D V+W+ +IA +VQ+G+ Q+A+ +F M+ E N V
Sbjct: 32 MYARCGEVDTAKQLFQEIKG-RDLVAWSAIIAAFVQSGYPQEALSLFRSMQNEGLQANKV 90
Query: 115 TIVSILPATAYLAALKEGMALHAQIVQMGHHSNAIVG 5
++S LPA A +++LK G ++H V+ + VG
Sbjct: 91 ILLSSLPACAEVSSLKLGKSMHCCAVKANVDLDISVG 127
Score = 55.5 bits (132), Expect = 5e-06
Identities = 29/79 (36%), Positives = 47/79 (59%)
Frame = -1
Query: 298 DMYAKCGSLAAAEYLFYKTEFIKDEVSWNTMIAGYVQNGHAQDAIYVFNQMKLEAFIPNL 119
DMYAKCG L +E +F++ + KD VSWN M+AGY +G AI +F++M+ +
Sbjct: 335 DMYAKCGWLDHSEKIFHEMKN-KDTVSWNVMLAGYAVHGRGSCAIELFSRMQDSEIRLDS 393
Query: 118 VTIVSILPATAYLAALKEG 62
+ +++L A + + EG
Sbjct: 394 FSFINVLSACRHAGLIGEG 412