BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00010277
         (846 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containi...   377   e-102
ref|XP_002516788.1| pentatricopeptide repeat-containing protein,...   377   e-102
ref|XP_003547236.1| PREDICTED: pentatricopeptide repeat-containi...   376   e-102
ref|XP_002314420.1| predicted protein [Populus trichocarpa] gi|2...   370   e-100
ref|XP_004165441.1| PREDICTED: pentatricopeptide repeat-containi...   369   e-100

>ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
            mitochondrial [Vitis vinifera]
          Length = 694

 Score =  377 bits (969), Expect = e-102
 Identities = 177/261 (67%), Positives = 221/261 (84%)
 Frame = -2

Query: 845  ELFNGMLSSGFRPNEITMVSVLSAVATLGSFSYGRWTHEYIINNKIPLTDNLIAAIIDMY 666
            +LF+ M++ G +PNEITMVSV SA+ATLG+   GRW HEYI++N IPL DNL AA+IDMY
Sbjct: 434  QLFHEMVAGGVQPNEITMVSVFSAIATLGTLMEGRWAHEYILSNSIPLNDNLNAALIDMY 493

Query: 665  AKCGSIETAVEFFDQIRNKVKSISPWNAIICGLAMHGHAKLSLDIFSDLLKCNHKLNSIT 486
            AKCGSI  A++ F +I+++V S+SPWNAIICGLAMHGHA +SL +FS L +   K NSIT
Sbjct: 494  AKCGSITIALQLFYEIQDRVSSVSPWNAIICGLAMHGHANVSLKLFSQLQRVRIKPNSIT 553

Query: 485  FIGVLSACCHAGLVDAGKEHFKSMKNIFNIDPNIKHYGCMVDLLGRAGRLEEAEELIQNM 306
            FIGVLSACCHAGLVD G+++FK MKN++NI+PNIKHYGCM+DLLGRAGRL+EA E+I+ M
Sbjct: 554  FIGVLSACCHAGLVDTGEKYFKGMKNLYNIEPNIKHYGCMIDLLGRAGRLKEAAEMIRKM 613

Query: 305  PMKADFVIWGTLLSACRMHNDVEVGERAAQSLARVEPTHGAGRVLLSNIYAEAGRWEDVG 126
            PMKAD VIWGTLL+ACR H +VE+GERAA++LA+++ +HGAGRVLLSNIYA+AGRW+D  
Sbjct: 614  PMKADVVIWGTLLAACRTHGNVEIGERAAENLAKLDISHGAGRVLLSNIYADAGRWDDAF 673

Query: 125  SVRKEMQIQRLTKSPAYSGVL 63
             VR+ MQ QR+ KSP  SGV+
Sbjct: 674  LVRRAMQSQRMKKSPGCSGVV 694



 Score = 69.3 bits (168), Expect = 1e-09
 Identities = 57/247 (23%), Positives = 96/247 (38%), Gaps = 33/247 (13%)
 Frame = -2

Query: 842  LFNGMLSSGFRPNEITMVSVLSAVATLGSFSYGRWTHEYIINNKIPLTDNLIAAIIDMYA 663
            ++  ML +G  PNE+ +V ++SA     + S G+  H  I+       D + A II  YA
Sbjct: 303  MYRSMLRTGVGPNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDCYDFIQATIIHFYA 362

Query: 662  KCGSIETAVEFFDQIRNKVKSISPWNAIICGLAMHG------------------------ 555
             CG I  A   F+        +S WNA+I G   +G                        
Sbjct: 363  ACGEINLAFLQFEL--GSKDHVSSWNALISGFVRNGMIEQARQLFDEMPERDVFSWSSMI 420

Query: 554  -------HAKLSLDIFSDLLKCNHKLNSITFIGVLSACCHAGLVDAGK-EHFKSMKNIFN 399
                      L+L +F +++    + N IT + V SA    G +  G+  H   + N   
Sbjct: 421  SGYSQNEQPDLALQLFHEMVAGGVQPNEITMVSVFSAIATLGTLMEGRWAHEYILSNSIP 480

Query: 398  IDPNIKHYGCMVDLLGRAGRLEEAEELIQNMPMKADFVI-WGTLLSACRMHNDVEVGERA 222
            ++ N+     ++D+  + G +  A +L   +  +   V  W  ++    MH    V  + 
Sbjct: 481  LNDNLN--AALIDMYAKCGSITIALQLFYEIQDRVSSVSPWNAIICGLAMHGHANVSLKL 538

Query: 221  AQSLARV 201
               L RV
Sbjct: 539  FSQLQRV 545


>ref|XP_002516788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223543876|gb|EEF45402.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 710

 Score =  377 bits (968), Expect = e-102
 Identities = 179/260 (68%), Positives = 219/260 (84%)
 Frame = -2

Query: 845  ELFNGMLSSGFRPNEITMVSVLSAVATLGSFSYGRWTHEYIINNKIPLTDNLIAAIIDMY 666
            ELF+ M++SG +PNE+TMVSVLSA+AT G+   GRW HEY+ NN I ++DNL AAIIDMY
Sbjct: 448  ELFHKMVASGIKPNEVTMVSVLSAIATSGTLKEGRWAHEYVHNNSITVSDNLSAAIIDMY 507

Query: 665  AKCGSIETAVEFFDQIRNKVKSISPWNAIICGLAMHGHAKLSLDIFSDLLKCNHKLNSIT 486
            AKCGSI  A+E F +IR K  ++SPWNAIICGLA+HGHA LSL IFSDL + + KLN+IT
Sbjct: 508  AKCGSINNALEVFYEIREKASTVSPWNAIICGLAVHGHANLSLKIFSDLERRHIKLNAIT 567

Query: 485  FIGVLSACCHAGLVDAGKEHFKSMKNIFNIDPNIKHYGCMVDLLGRAGRLEEAEELIQNM 306
            FIGVL+ACCH GLV++GK HF SMK+  +IDP+IKHYGCMVDLLGRAGRLEEAEE+I++M
Sbjct: 568  FIGVLTACCHVGLVESGKRHFMSMKSEHSIDPDIKHYGCMVDLLGRAGRLEEAEEMIRSM 627

Query: 305  PMKADFVIWGTLLSACRMHNDVEVGERAAQSLARVEPTHGAGRVLLSNIYAEAGRWEDVG 126
            PMKAD VIWGTLL+ACR H +V+VGERAA++LAR+EP+HGA RVLLSN+YA+AG+WED  
Sbjct: 628  PMKADVVIWGTLLAACRTHGNVDVGERAAENLARLEPSHGASRVLLSNMYADAGKWEDAF 687

Query: 125  SVRKEMQIQRLTKSPAYSGV 66
             VR+ MQ  R+ + P YSGV
Sbjct: 688  LVRRAMQSHRMQRLPGYSGV 707



 Score = 68.9 bits (167), Expect = 1e-09
 Identities = 50/244 (20%), Positives = 99/244 (40%), Gaps = 31/244 (12%)
 Frame = -2

Query: 842  LFNGMLSSGFRPNEITMVSVLSAVATLGSFSYGRWTHEYIINNKIPLTDNLIAAIIDMYA 663
            ++  M+S+G+ PN++ MV ++S      + + G+     ++       D + + II +YA
Sbjct: 317  MYRSMISAGWEPNDVMMVDLISGCGRTMAMTEGQQLLSAVVKMGFDCYDFIQSTIIHLYA 376

Query: 662  KCGSIETAVEFF----------------DQIRNKV-------------KSISPWNAIICG 570
             CG I  A   F                  +RN++             + +  W+ +I G
Sbjct: 377  ACGRINEACLQFRIGSKENVASWNALIAGYVRNRMIDRAMELFNEMPERDVFSWSTMISG 436

Query: 569  LAMHGHAKLSLDIFSDLLKCNHKLNSITFIGVLSACCHAGLVDAGK-EHFKSMKNIFNID 393
               +    L+L++F  ++    K N +T + VLSA   +G +  G+  H     N   + 
Sbjct: 437  YTQNEQPNLALELFHKMVASGIKPNEVTMVSVLSAIATSGTLKEGRWAHEYVHNNSITVS 496

Query: 392  PNIKHYGCMVDLLGRAGRLEEAEELIQNMPMKADFVI-WGTLLSACRMHNDVEVGERAAQ 216
             N+     ++D+  + G +  A E+   +  KA  V  W  ++    +H    +  +   
Sbjct: 497  DNLS--AAIIDMYAKCGSINNALEVFYEIREKASTVSPWNAIICGLAVHGHANLSLKIFS 554

Query: 215  SLAR 204
             L R
Sbjct: 555  DLER 558


>ref|XP_003547236.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
            mitochondrial-like [Glycine max]
          Length = 912

 Score =  376 bits (966), Expect = e-102
 Identities = 176/261 (67%), Positives = 217/261 (83%)
 Frame = -2

Query: 845  ELFNGMLSSGFRPNEITMVSVLSAVATLGSFSYGRWTHEYIINNKIPLTDNLIAAIIDMY 666
            ELF+ M++SG +PNE+TMVSV SA+ATLG+   GRW HEYI N  IPL DNL AA+IDMY
Sbjct: 651  ELFHKMVASGIKPNEVTMVSVFSAIATLGTLKEGRWAHEYICNESIPLNDNLRAALIDMY 710

Query: 665  AKCGSIETAVEFFDQIRNKVKSISPWNAIICGLAMHGHAKLSLDIFSDLLKCNHKLNSIT 486
            AKCGSI +A++FF+QIR+K  S+SPWNAIICGLA HGHA + LD+FSD+ + N K N IT
Sbjct: 711  AKCGSINSALQFFNQIRDKTFSVSPWNAIICGLASHGHASMCLDVFSDMQRYNIKPNPIT 770

Query: 485  FIGVLSACCHAGLVDAGKEHFKSMKNIFNIDPNIKHYGCMVDLLGRAGRLEEAEELIQNM 306
            FIGVLSACCHAGLV+ G+  F+ MK+ +N++P+IKHYGCMVDLLGRAG LEEAEE+I++M
Sbjct: 771  FIGVLSACCHAGLVEPGRRIFRIMKSAYNVEPDIKHYGCMVDLLGRAGLLEEAEEMIRSM 830

Query: 305  PMKADFVIWGTLLSACRMHNDVEVGERAAQSLARVEPTHGAGRVLLSNIYAEAGRWEDVG 126
            PMKAD VIWGTLL+ACR H DV +GERAA+SLA + P+HG G+VLLSNIYA+AGRWEDV 
Sbjct: 831  PMKADIVIWGTLLAACRTHGDVNIGERAAESLAGLAPSHGGGKVLLSNIYADAGRWEDVS 890

Query: 125  SVRKEMQIQRLTKSPAYSGVL 63
             VR+ +Q QR+ + P  SGV+
Sbjct: 891  LVRRAIQNQRMERMPGCSGVI 911


>ref|XP_002314420.1| predicted protein [Populus trichocarpa] gi|222863460|gb|EEF00591.1|
            predicted protein [Populus trichocarpa]
          Length = 571

 Score =  370 bits (950), Expect = e-100
 Identities = 173/261 (66%), Positives = 216/261 (82%)
 Frame = -2

Query: 845  ELFNGMLSSGFRPNEITMVSVLSAVATLGSFSYGRWTHEYIINNKIPLTDNLIAAIIDMY 666
            ELF+ M++SG RPNE+TMVSV SA+A LG+   GRW HEY+  N IPL DNL A+IIDMY
Sbjct: 311  ELFHRMVTSGIRPNEVTMVSVFSAIAALGTLKEGRWAHEYVHYNSIPLNDNLSASIIDMY 370

Query: 665  AKCGSIETAVEFFDQIRNKVKSISPWNAIICGLAMHGHAKLSLDIFSDLLKCNHKLNSIT 486
            AKCGSI TA+E F QIR+K  ++SPWN IICGLA HGHAKLSL+I+SDL + + KL++IT
Sbjct: 371  AKCGSINTALEVFYQIRDKASTVSPWNTIICGLATHGHAKLSLEIYSDLQRRHIKLSAIT 430

Query: 485  FIGVLSACCHAGLVDAGKEHFKSMKNIFNIDPNIKHYGCMVDLLGRAGRLEEAEELIQNM 306
            FIGVLSACCHAGLV  GK +FKSMK+ +NIDP+I+HYGCMVDLLG+AGRLEE EELI++M
Sbjct: 431  FIGVLSACCHAGLVGLGKSYFKSMKSKYNIDPDIRHYGCMVDLLGKAGRLEEVEELIRSM 490

Query: 305  PMKADFVIWGTLLSACRMHNDVEVGERAAQSLARVEPTHGAGRVLLSNIYAEAGRWEDVG 126
            PMKAD VIWG LLSAC+ H ++ +GERAA++LA+++P+HG  R+LLSN+YA+ GRWED  
Sbjct: 491  PMKADVVIWGMLLSACKTHRNITIGERAAENLAKLDPSHGPSRILLSNLYADVGRWEDAF 550

Query: 125  SVRKEMQIQRLTKSPAYSGVL 63
             VR+ MQ  R+ + P YSGV+
Sbjct: 551  LVRRVMQSHRMHRLPGYSGVV 571



 Score = 63.5 bits (153), Expect = 6e-08
 Identities = 51/244 (20%), Positives = 100/244 (40%), Gaps = 31/244 (12%)
 Frame = -2

Query: 842 LFNGMLSSGFRPNEITMVSVLSAVATLGSFSYGRWTHEYIINNKIPLTDNLIAAIIDMYA 663
           ++  M+S+G  P+E+TM+ ++SA     +   G+  H  ++       D + A +I  Y+
Sbjct: 180 MYRLMVSTGLGPSEVTMIDLISACGRAMAIVEGQQLHCVVVKTSFDCYDFVQATVIHFYS 239

Query: 662 KCGSIETA---VEFFDQ-------------IRNKV-------------KSISPWNAIICG 570
            CG I  A   +EF  +             IRN++             + +  W+ +I G
Sbjct: 240 ACGRINEACFQLEFGMKDHVASRNALIAGFIRNRIIDQARELFNEMPERDVFSWSTMISG 299

Query: 569 LAMHGHAKLSLDIFSDLLKCNHKLNSITFIGVLSACCHAGLVDAGK-EHFKSMKNIFNID 393
                   ++L++F  ++    + N +T + V SA    G +  G+  H     N   ++
Sbjct: 300 YTQSDQPGMALELFHRMVTSGIRPNEVTMVSVFSAIAALGTLKEGRWAHEYVHYNSIPLN 359

Query: 392 PNIKHYGCMVDLLGRAGRLEEAEELIQNMPMKADFVI-WGTLLSACRMHNDVEVGERAAQ 216
            N+     ++D+  + G +  A E+   +  KA  V  W T++     H   ++      
Sbjct: 360 DNLS--ASIIDMYAKCGSINTALEVFYQIRDKASTVSPWNTIICGLATHGHAKLSLEIYS 417

Query: 215 SLAR 204
            L R
Sbjct: 418 DLQR 421


>ref|XP_004165441.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
            mitochondrial-like isoform 1 [Cucumis sativus]
          Length = 703

 Score =  369 bits (946), Expect = e-100
 Identities = 172/261 (65%), Positives = 214/261 (81%)
 Frame = -2

Query: 845  ELFNGMLSSGFRPNEITMVSVLSAVATLGSFSYGRWTHEYIINNKIPLTDNLIAAIIDMY 666
            +LF+GM+ S   PNEITMVSV SA+A LG    GRW HEY+ N  IPL DNL AAIIDMY
Sbjct: 443  DLFHGMIDSKVEPNEITMVSVFSAIAALGKLPEGRWAHEYVCNKVIPLNDNLSAAIIDMY 502

Query: 665  AKCGSIETAVEFFDQIRNKVKSISPWNAIICGLAMHGHAKLSLDIFSDLLKCNHKLNSIT 486
            AKCGSI+TA++ F QI++K  ++SPWNAIICGLAMHGHA LSL+IFS+L + + KLNSIT
Sbjct: 503  AKCGSIDTALDVFRQIKDKTSTVSPWNAIICGLAMHGHANLSLEIFSNLQRRSIKLNSIT 562

Query: 485  FIGVLSACCHAGLVDAGKEHFKSMKNIFNIDPNIKHYGCMVDLLGRAGRLEEAEELIQNM 306
            F+GVLSACCHAGLV+ G+ +F SMK    ++PNIKHYGC+VDLLGR GRL EAEE+++ M
Sbjct: 563  FLGVLSACCHAGLVEVGERYFWSMKTQHGVEPNIKHYGCLVDLLGRVGRLREAEEIVRTM 622

Query: 305  PMKADFVIWGTLLSACRMHNDVEVGERAAQSLARVEPTHGAGRVLLSNIYAEAGRWEDVG 126
            PMKAD VIWGTLL++ R H +VE+GERAA++LAR++P+HG GRVLLSN+YA+AG WED  
Sbjct: 623  PMKADVVIWGTLLASSRTHGEVEIGERAAENLARLQPSHGPGRVLLSNLYADAGLWEDAA 682

Query: 125  SVRKEMQIQRLTKSPAYSGVL 63
             VR+ +Q QR+ +SP YSGV+
Sbjct: 683  LVRRAIQSQRMIRSPGYSGVV 703