BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00009882
         (1344 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002303926.1| predicted protein [Populus trichocarpa] gi|2...   185   3e-44
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...   183   8e-44
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   183   8e-44
emb|CBI40152.3| unnamed protein product [Vitis vinifera]              174   6e-41
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   174   6e-41

>ref|XP_002303926.1| predicted protein [Populus trichocarpa] gi|222841358|gb|EEE78905.1|
            predicted protein [Populus trichocarpa]
          Length = 1020

 Score =  185 bits (469), Expect = 3e-44
 Identities = 138/453 (30%), Positives = 193/453 (42%), Gaps = 16/453 (3%)
 Frame = +2

Query: 8    VWNKVVEKSEERDHDMGWGKKVEPAQRSEEKDEWNQVVEKSEERDHDMGWGKKVEPAQRS 187
            +W K V  S + D   GWGK   P    E    W    E  +    D GWG  V  +   
Sbjct: 631  LWGKEVS-SNQADTASGWGKPKSP----EISLGWGSTKESVKS---DRGWG--VSSSGGG 680

Query: 188  EEKDEWNQVVEKSGEGDNDLGWGNKAEPAQ----------RSKENDMWNKVVENSGEENH 337
             +K   NQ +  +G+G    GWGNK    Q          +S EN     + + SG+E H
Sbjct: 681  RDKKTENQSL--AGQGKESGGWGNKVTSNQADTASGWGKPKSSENSQGWGLSKESGKEVH 738

Query: 338  DLGWGNKVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWGNKVD 517
            + G  N                                               GW NK  
Sbjct: 739  EWGVPNSA----------------------GGNGSETNNNNENQSLVEQGKESGWDNKAS 776

Query: 518  SARWSEEGGQDLGWGNRVEPAKR----SEEEAGVQDSGWADKVDSAGWSGEGGQNLGWGD 685
            S     + G   GWG    PA      S  E      GW   V ++G     G++  WG 
Sbjct: 777  S----NQEGTASGWGKPKSPALSEGWGSPREPVKAVHGWG--VPNSGGGNGSGRDQQWGQ 830

Query: 686  RIESSQRPEEEEVSGWDKKS-DHCNKSSIEKESSDPWGNKKEKPQEKLSQSGWEKKAIGV 862
            +    ++   E   GW   + D  NK            N+  KP E L+ SG        
Sbjct: 831  QSREFKKDRFEGSRGWGSNNGDWKNKR-----------NRPSKPHEDLNASG-------- 871

Query: 863  RKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQELLAAIEPIMQSVRKILHQSGYNEGD 1042
                                             Q++L+ IEP+M S+R+I+HQ+GYN+GD
Sbjct: 872  -----------------IFTTTRQRLDVFTSQEQDILSDIEPLMLSIRRIMHQTGYNDGD 914

Query: 1043 PLTADDQAYIIEHVFNYHPDKVVKMGAGMDYIMINKHSAHQ-GRCLHLVRTDGGTEDFSY 1219
            PL+ADDQ+Y++++VF+YHPDK VKMGAG+D++ +++HS  Q  RC ++V TDG  +DFSY
Sbjct: 915  PLSADDQSYVLDNVFHYHPDKAVKMGAGIDHVTVSRHSNFQESRCFYIVSTDGCKQDFSY 974

Query: 1220 LKCLENFMKEKFPDRAEAFNSKYFKRKSDSVST 1318
             KCLENF+K K+PD A+ F +KYF R+ +   T
Sbjct: 975  RKCLENFIKGKYPDLADEFIAKYFARRGNRQRT 1007


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
            sativus]
          Length = 1959

 Score =  183 bits (465), Expect = 8e-44
 Identities = 125/440 (28%), Positives = 192/440 (43%), Gaps = 17/440 (3%)
 Frame = +2

Query: 29   KSEERDH--DMGWGKKVEPAQRSEEKDEWNQVVEKSEERDHDMGWGKKVEPAQRSEEKDE 202
            K+   DH  + GW        R +  D W++   +  E      WG         + KD 
Sbjct: 1519 KNSGGDHQSEAGWNDGQASMDREKVSDRWDRKATQKLESHQTSSWGSPTV----GDSKDS 1574

Query: 203  WNQVVEKSGEGDNDLGWGNKAEP-AQRSKENDMWNK-----VVENS--GEENHDLGWGNK 358
            +        +   +  W  +  P A +   ND W +     V++ S    E++  GWG++
Sbjct: 1575 FPSKAVDHSDSVVNHSWDRQKSPEASQGFGNDAWGQQKSRDVIKPSLANNESNLSGWGSQ 1634

Query: 359  VEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWGNKVDSARWSEE 538
            +E                                             WG++ DS      
Sbjct: 1635 IESNEGSDHGFDQVTNEQKSSDTRGWDSQEKTDKPWDKQKSLEASQSWGSQNDSLG---- 1690

Query: 539  GGQDLGWGN----RVEPAKRSEEEAGVQDSGWADKVDSAGWSGEGGQNL--GWGDRIESS 700
                  WG       E ++ S++++  Q S       S GW  +    +  GWG   ESS
Sbjct: 1691 -----SWGQPQRASEECSRESQDDSSTQFSQLKPPETSLGWEQQKSPEVSHGWGSHKESS 1745

Query: 701  QRPEEEEVSGWDKKSDHCNKSSIEKESSDPWGNKKEKPQEKLSQSGWEKKAIGVRKXXXX 880
               E+    GWDKK+     S     ++  W N+K +P +    S  +     +      
Sbjct: 1746 ---EQTSSHGWDKKNQG---SKGWGGNAGEWKNRKNRPPKSPGMSNDDANLRAL------ 1793

Query: 881  XXXXXXXXXXXXXXXXXXXXXXXXXXXQELLAAIEPIMQSVRKILHQSGYNEGDPLTADD 1060
                                       Q++LA IEPIMQS+RK++HQSGYN+GDPL+A+D
Sbjct: 1794 ------------YTASGQRLDMFTSEEQDILADIEPIMQSIRKVMHQSGYNDGDPLSAED 1841

Query: 1061 QAYIIEHVFNYHPDKVVKMGAGMDYIMINKHSAHQ-GRCLHLVRTDGGTEDFSYLKCLEN 1237
            Q+++++ VFN+HPDK  KMGAG+D+ M+++HS+ Q  RC ++V TDG  EDFSY KCL+N
Sbjct: 1842 QSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHSSFQESRCFYVVTTDGHKEDFSYRKCLDN 1901

Query: 1238 FMKEKFPDRAEAFNSKYFKR 1297
            F+K K+PD AE F +KYF++
Sbjct: 1902 FIKGKYPDLAEMFVAKYFRK 1921


>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1-like [Cucumis sativus]
          Length = 2019

 Score =  183 bits (465), Expect = 8e-44
 Identities = 125/440 (28%), Positives = 192/440 (43%), Gaps = 17/440 (3%)
 Frame = +2

Query: 29   KSEERDH--DMGWGKKVEPAQRSEEKDEWNQVVEKSEERDHDMGWGKKVEPAQRSEEKDE 202
            K+   DH  + GW        R +  D W++   +  E      WG         + KD 
Sbjct: 1579 KNSGGDHQSEAGWNDGQASMDREKVSDRWDRKATQKLESHQTSSWGSPTV----GDSKDS 1634

Query: 203  WNQVVEKSGEGDNDLGWGNKAEP-AQRSKENDMWNK-----VVENS--GEENHDLGWGNK 358
            +        +   +  W  +  P A +   ND W +     V++ S    E++  GWG++
Sbjct: 1635 FPSKAVDHSDSVVNHSWDRQKSPEASQGFGNDAWGQQKSRDVIKPSLANNESNLSGWGSQ 1694

Query: 359  VEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWGNKVDSARWSEE 538
            +E                                             WG++ DS      
Sbjct: 1695 IESNEGSDHGFDQVTNEQKSSDTRGWDSQEKTDKPWDKQKSLEASQSWGSQNDSLG---- 1750

Query: 539  GGQDLGWGN----RVEPAKRSEEEAGVQDSGWADKVDSAGWSGEGGQNL--GWGDRIESS 700
                  WG       E ++ S++++  Q S       S GW  +    +  GWG   ESS
Sbjct: 1751 -----SWGQPQRASEECSRESQDDSSTQFSQLKPPETSLGWEQQKSPEVSHGWGSNKESS 1805

Query: 701  QRPEEEEVSGWDKKSDHCNKSSIEKESSDPWGNKKEKPQEKLSQSGWEKKAIGVRKXXXX 880
               E+    GWDKK+     S     ++  W N+K +P +    S  +     +      
Sbjct: 1806 ---EQTSSHGWDKKNQG---SKGWGGNAGEWKNRKNRPPKSPGMSNDDANLRAL------ 1853

Query: 881  XXXXXXXXXXXXXXXXXXXXXXXXXXXQELLAAIEPIMQSVRKILHQSGYNEGDPLTADD 1060
                                       Q++LA IEPIMQS+RK++HQSGYN+GDPL+A+D
Sbjct: 1854 ------------YTASGQRLDMFTSEEQDILADIEPIMQSIRKVMHQSGYNDGDPLSAED 1901

Query: 1061 QAYIIEHVFNYHPDKVVKMGAGMDYIMINKHSAHQ-GRCLHLVRTDGGTEDFSYLKCLEN 1237
            Q+++++ VFN+HPDK  KMGAG+D+ M+++HS+ Q  RC ++V TDG  EDFSY KCL+N
Sbjct: 1902 QSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHSSFQESRCFYVVTTDGHKEDFSYRKCLDN 1961

Query: 1238 FMKEKFPDRAEAFNSKYFKR 1297
            F+K K+PD AE F +KYF++
Sbjct: 1962 FIKGKYPDLAEMFVAKYFRK 1981


>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  174 bits (440), Expect = 6e-41
 Identities = 94/241 (39%), Positives = 126/241 (52%), Gaps = 14/241 (5%)
 Frame = +2

Query: 617  GWADKVDSAGWSGEGG--------QNLGWGDRIESSQRPEEEEVSGWDKKSDHCNKSSIE 772
            GW D  + + W+  G          + GWG   E +Q P  +   GW   +        E
Sbjct: 1622 GWNDVEEQSQWNQRGSAVKNDQSESSHGWGPSNEQNQLPSSQ---GWGSPNAGAGH---E 1675

Query: 773  KESSDPWGNKKEKPQEKLSQSGW-----EKKAIGVRKXXXXXXXXXXXXXXXXXXXXXXX 937
             E+   WG    K        GW     E K    R                        
Sbjct: 1676 SETQSQWGQPSGKKSRPEGSRGWGSNNTEWKNKKNRPNKPQGPLNDDYSAGGIFTATRQR 1735

Query: 938  XXXXXXXXQELLAAIEPIMQSVRKILHQSGYNEGDPLTADDQAYIIEHVFNYHPDKVVKM 1117
                    Q++L  +EPIMQS+R+I+HQ+GYN+GDPL+ADDQ+YI++ VFN HPDK VKM
Sbjct: 1736 VDIFTSEEQDILLDVEPIMQSIRRIMHQAGYNDGDPLSADDQSYILDKVFNNHPDKAVKM 1795

Query: 1118 GAGMDYIMINKHSAH-QGRCLHLVRTDGGTEDFSYLKCLENFMKEKFPDRAEAFNSKYFK 1294
            G G+DY+M+++HS+  + RC ++V TDG  EDFSY KCLENF+KEK+PD AE F  KYF+
Sbjct: 1796 GTGIDYVMVSRHSSFLESRCFYVVSTDGHKEDFSYRKCLENFIKEKYPDNAETFIGKYFR 1855

Query: 1295 R 1297
            R
Sbjct: 1856 R 1856


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  174 bits (440), Expect = 6e-41
 Identities = 94/241 (39%), Positives = 126/241 (52%), Gaps = 14/241 (5%)
 Frame = +2

Query: 617  GWADKVDSAGWSGEGG--------QNLGWGDRIESSQRPEEEEVSGWDKKSDHCNKSSIE 772
            GW D  + + W+  G          + GWG   E +Q P  +   GW   +        E
Sbjct: 1562 GWNDVEEQSQWNQRGSAVKNDQSESSHGWGPSNEQNQLPSSQ---GWGSPNAGAGH---E 1615

Query: 773  KESSDPWGNKKEKPQEKLSQSGW-----EKKAIGVRKXXXXXXXXXXXXXXXXXXXXXXX 937
             E+   WG    K        GW     E K    R                        
Sbjct: 1616 SETQSQWGQPSGKKSRPEGSRGWGSNNTEWKNKKNRPNKPQGPLNDDYSAGGIFTATRQR 1675

Query: 938  XXXXXXXXQELLAAIEPIMQSVRKILHQSGYNEGDPLTADDQAYIIEHVFNYHPDKVVKM 1117
                    Q++L  +EPIMQS+R+I+HQ+GYN+GDPL+ADDQ+YI++ VFN HPDK VKM
Sbjct: 1676 VDIFTSEEQDILLDVEPIMQSIRRIMHQAGYNDGDPLSADDQSYILDKVFNNHPDKAVKM 1735

Query: 1118 GAGMDYIMINKHSAH-QGRCLHLVRTDGGTEDFSYLKCLENFMKEKFPDRAEAFNSKYFK 1294
            G G+DY+M+++HS+  + RC ++V TDG  EDFSY KCLENF+KEK+PD AE F  KYF+
Sbjct: 1736 GTGIDYVMVSRHSSFLESRCFYVVSTDGHKEDFSYRKCLENFIKEKYPDNAETFIGKYFR 1795

Query: 1295 R 1297
            R
Sbjct: 1796 R 1796