BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00009376
         (1003 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274318.1| PREDICTED: pentatricopeptide repeat-containi...   308   1e-81
ref|XP_004140747.1| PREDICTED: pentatricopeptide repeat-containi...   301   2e-79
ref|XP_002327501.1| predicted protein [Populus trichocarpa] gi|2...   284   3e-74
ref|NP_567622.1| pentatricopeptide repeat-containing protein [Ar...   281   2e-73
ref|XP_002867860.1| EMB1417 [Arabidopsis lyrata subsp. lyrata] g...   281   2e-73

>ref|XP_002274318.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21190
            [Vitis vinifera] gi|302143769|emb|CBI22630.3| unnamed
            protein product [Vitis vinifera]
          Length = 295

 Score =  308 bits (790), Expect = 1e-81
 Identities = 161/262 (61%), Positives = 188/262 (71%)
 Frame = -3

Query: 1001 RNCSSVVVCAAKGPRPRYPRVWKTKTRIGTISKSIKLVDTIKELSNVKEEVYGALDSFIA 822
            +N  S+VVC AKGPRPRYPRVWKT+ RIGTISKS KLVD IK LSNVKEEVYGALDSFIA
Sbjct: 22   KNPRSIVVCGAKGPRPRYPRVWKTRQRIGTISKSAKLVDCIKGLSNVKEEVYGALDSFIA 81

Query: 821  WELEFPLITVXXXXXXXXXXXXXKRIIQVTKWMLSKGQGRTMGSYYMLLNALAEDGRLDE 642
            WELEFPLITV             KRIIQVTKWMLSKGQGRTMGSY+ LLNALAEDGRLDE
Sbjct: 82   WELEFPLITVKKALKTLEDQKEWKRIIQVTKWMLSKGQGRTMGSYFTLLNALAEDGRLDE 141

Query: 641  AEELWRKLFFENLESMPRNFFDKMISIYYERDMYDKMFEVFADMEELGVKPSVSIVAKVG 462
            AEELW KLF ENLES+PR F+DKMISIYY RDM++KMFE+FADMEELG++P+ SIV  VG
Sbjct: 142  AEELWTKLFSENLESLPRVFYDKMISIYYRRDMHEKMFEIFADMEELGIRPNTSIVKMVG 201

Query: 461  DVFQKLNMXXXXXXXXXXXXXXXXXYRYIDGKRVKIKSNPPAQSRYTRNAVTHTGKETIE 282
            DVFQKL M                 YRYI GKRV+I++    +S     A +    E + 
Sbjct: 202  DVFQKLGMLDKYEKLQKKYPPPKWEYRYIKGKRVRIRAKLTGESDDPGEAESDDPGEAVN 261

Query: 281  TVPESFESTDVSSDKPSDNLSE 216
             + +  E+++   D+   ++ +
Sbjct: 262  EINDKTENSNEMHDEADSSVDD 283


>ref|XP_004140747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21190-like [Cucumis sativus]
          Length = 331

 Score =  301 bits (771), Expect = 2e-79
 Identities = 162/281 (57%), Positives = 195/281 (69%), Gaps = 11/281 (3%)
 Frame = -3

Query: 992 SSVVVCAAKGPRPRYPRVWKTKTRIGTISKSIKLVDTIKELSNVKEEVYGALDSFIAWEL 813
           SS VVCAAKGPRPRYPRVWKTK RIGTISK+ KLVD +K LSNVKEEVYGALDSFIAWEL
Sbjct: 43  SSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWEL 102

Query: 812 EFPLITVXXXXXXXXXXXXXKRIIQVTKWMLSKGQGRTMGSYYMLLNALAEDGRLDEAEE 633
           EFPLITV             KRIIQ+TKWMLSKGQGRTMGSY+ LLNALAEDGRLDEAEE
Sbjct: 103 EFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEE 162

Query: 632 LWRKLFFENLESMPRNFFDKMISIYYERDMYDKMFEVFADMEELGVKPSVSIVAKVGDVF 453
           LW KLF ++LES+PR FF KMIS+YY++ M+DK+FEVFADMEELGV+P+++IV KVG+VF
Sbjct: 163 LWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVF 222

Query: 452 QKLNMXXXXXXXXXXXXXXXXXYRYIDGKRVKIKSNPPAQSRYTRNAVTHTGK------- 294
           Q+L M                 YRYI GKRVKI++   +++  + N ++   K       
Sbjct: 223 QELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTN 282

Query: 293 ----ETIETVPESFESTDVSSDKPSDNLSEHELAESSSVEH 183
                 I +   S E  +  S+ P + L +  +   S+ EH
Sbjct: 283 SIDEAEITSEDSSLEDDEDMSEDPDEILEDEHMWSKSNFEH 323


>ref|XP_002327501.1| predicted protein [Populus trichocarpa] gi|222836055|gb|EEE74476.1|
           predicted protein [Populus trichocarpa]
          Length = 229

 Score =  284 bits (726), Expect = 3e-74
 Identities = 145/211 (68%), Positives = 163/211 (77%)
 Frame = -3

Query: 980 VCAAKGPRPRYPRVWKTKTRIGTISKSIKLVDTIKELSNVKEEVYGALDSFIAWELEFPL 801
           VCAAKGPRPRYPRVWKTK RIGTISKS KLVD IK LSNVKEEVYGALDSF+AWELEFPL
Sbjct: 1   VCAAKGPRPRYPRVWKTKRRIGTISKSAKLVDCIKGLSNVKEEVYGALDSFVAWELEFPL 60

Query: 800 ITVXXXXXXXXXXXXXKRIIQVTKWMLSKGQGRTMGSYYMLLNALAEDGRLDEAEELWRK 621
           I V             KRIIQVTKWMLSKGQGRTMG+Y+ L+NALAEDGRLDE EELW K
Sbjct: 61  IAVKKALRALEEQQEWKRIIQVTKWMLSKGQGRTMGTYFTLMNALAEDGRLDEVEELWTK 120

Query: 620 LFFENLESMPRNFFDKMISIYYERDMYDKMFEVFADMEELGVKPSVSIVAKVGDVFQKLN 441
           LF + LE  PR  FDKMISIYY+RDM+D++FE+FADMEELG++PSVSIV  VG+VFQ+L 
Sbjct: 121 LFSQYLEGTPRMMFDKMISIYYKRDMHDQIFEIFADMEELGLRPSVSIVNMVGNVFQRLG 180

Query: 440 MXXXXXXXXXXXXXXXXXYRYIDGKRVKIKS 348
           M                 YRYI GKRV++++
Sbjct: 181 MMDKYEKLKKKYPPPKWIYRYIKGKRVRVRA 211


>ref|NP_567622.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75246109|sp|Q8LG95.1|PP332_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g21190; AltName: Full=Protein EMBRYO DEFECTIVE 1417
           gi|21618230|gb|AAM67280.1| unknown [Arabidopsis
           thaliana] gi|51969238|dbj|BAD43311.1| putative protein
           [Arabidopsis thaliana] gi|51971351|dbj|BAD44340.1|
           putative protein [Arabidopsis thaliana]
           gi|51971365|dbj|BAD44347.1| putative protein
           [Arabidopsis thaliana] gi|332659017|gb|AEE84417.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 307

 Score =  281 bits (718), Expect = 2e-73
 Identities = 150/272 (55%), Positives = 186/272 (68%)
 Frame = -3

Query: 992 SSVVVCAAKGPRPRYPRVWKTKTRIGTISKSIKLVDTIKELSNVKEEVYGALDSFIAWEL 813
           ++VVVCAA+GPRPR PRVWKT+ RIGTISK+ K++  IK LSNVKEEVYGALDSFIAWEL
Sbjct: 28  NNVVVCAARGPRPRSPRVWKTRKRIGTISKAAKMIACIKGLSNVKEEVYGALDSFIAWEL 87

Query: 812 EFPLITVXXXXXXXXXXXXXKRIIQVTKWMLSKGQGRTMGSYYMLLNALAEDGRLDEAEE 633
           EFPL+ V             K+IIQVTKWMLSKGQGRTMG+Y+ LLNALAED RLDEAEE
Sbjct: 88  EFPLVIVKKALVILEDEKEWKKIIQVTKWMLSKGQGRTMGTYFSLLNALAEDNRLDEAEE 147

Query: 632 LWRKLFFENLESMPRNFFDKMISIYYERDMYDKMFEVFADMEELGVKPSVSIVAKVGDVF 453
           LW KLF E+LE  PR FF+KMISIYY+RDM+ K+FEVFADMEELGVKP+V+IV+ VG VF
Sbjct: 148 LWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQKLFEVFADMEELGVKPNVAIVSMVGKVF 207

Query: 452 QKLNMXXXXXXXXXXXXXXXXXYRYIDGKRVKIKSNPPAQSRYTRNAVTHTGKETIETVP 273
            KL M                 +RYI G+RVK+K+    +           G+  + +  
Sbjct: 208 VKLEMKDKYEKLMKKYPPPQWEFRYIKGRRVKVKAKQLNE--------LSEGEGGLSSDE 259

Query: 272 ESFESTDVSSDKPSDNLSEHELAESSSVEHSE 177
           +  ++   S ++  ++LSE E  E   +  S+
Sbjct: 260 DKIDNEIESEEEDGEDLSEEEEDEKELLGGSQ 291


>ref|XP_002867860.1| EMB1417 [Arabidopsis lyrata subsp. lyrata]
           gi|297313696|gb|EFH44119.1| EMB1417 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 317

 Score =  281 bits (718), Expect = 2e-73
 Identities = 150/263 (57%), Positives = 185/263 (70%), Gaps = 2/263 (0%)
 Frame = -3

Query: 992 SSVVVCAAKGPRPRYPRVWKTKTRIGTISKSIKLVDTIKELSNVKEEVYGALDSFIAWEL 813
           ++VVVCAA+GPRPR PRVWKT+ RIGTISK+ K++  IK LSNVKEEVYGALDSFIAWEL
Sbjct: 28  NNVVVCAARGPRPRSPRVWKTRKRIGTISKAAKMIACIKGLSNVKEEVYGALDSFIAWEL 87

Query: 812 EFPLITVXXXXXXXXXXXXXKRIIQVTKWMLSKGQGRTMGSYYMLLNALAEDGRLDEAEE 633
           EFPL+ V             K+IIQVTKWMLSKGQGRTMG+Y+ LLNALAED RLDEAEE
Sbjct: 88  EFPLVIVKKALVILEDEKEWKKIIQVTKWMLSKGQGRTMGTYFSLLNALAEDNRLDEAEE 147

Query: 632 LWRKLFFENLESMPRNFFDKMISIYYERDMYDKMFEVFADMEELGVKPSVSIVAKVGDVF 453
           LW KLF E+LE  PR FF+KMISIYY+RDM+ K+FEVFADMEELGVKP+++IV+ VG VF
Sbjct: 148 LWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQKLFEVFADMEELGVKPNIAIVSMVGKVF 207

Query: 452 QKLNMXXXXXXXXXXXXXXXXXYRYIDGKRVKIKSNPPAQSRYTRNAVTHTGKETIETVP 273
            KL M                 +RYI G+RVK+K+    +       ++ + ++ I+T  
Sbjct: 208 VKLEMKDKYEKLMKKYPPPQWEFRYIKGRRVKVKAKQLNELSEGEGGLS-SDEDKIDTEI 266

Query: 272 ESFES--TDVSSDKPSDNLSEHE 210
           ES     +D    +  ++LSE E
Sbjct: 267 ESKSKILSDKEPKQDGEDLSEEE 289