BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00008934
         (678 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_564247.1| pentatricopeptide repeat-containing protein [Ar...    73   3e-22
gb|AAM61409.1| unknown [Arabidopsis thaliana]                          73   3e-22
ref|XP_002893403.1| pentatricopeptide repeat-containing protein ...    73   7e-22
ref|XP_002274321.2| PREDICTED: pentatricopeptide repeat-containi...    76   2e-19
ref|XP_004144175.1| PREDICTED: pentatricopeptide repeat-containi...    77   7e-19

>ref|NP_564247.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75173405|sp|Q9FZD1.1|PPR58_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g26460, mitochondrial; Flags: Precursor
           gi|9797754|gb|AAF98572.1|AC013427_15 Contains similarity
           to a hypothetical protein F21B7.16 gi|7485908 from
           Arabidopsis thaliana BAC F21B7 gb|AC002560 and contains
           multiple PPR PF|01535 repeats and a domain of unknown
           function PF|00668. ESTs gb|T45755, gb|AI993167,
           gb|AV554476, gb|T46823, gb|T41981, gb|AV546597,
           gb|AI099868 come from this gene [Arabidopsis thaliana]
           gi|19698979|gb|AAL91225.1| unknown protein [Arabidopsis
           thaliana] gi|22136300|gb|AAM91228.1| unknown protein
           [Arabidopsis thaliana] gi|332192573|gb|AEE30694.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score = 73.2 bits (178), Expect(2) = 3e-22
 Identities = 33/58 (56%), Positives = 45/58 (77%)
 Frame = -1

Query: 672 EALMLFDHFKGLGIKANSTTYALLIDAHLIARDQKSALCVIEDMVLSGFAPTREILKK 499
           EA  +F+H   +G+K +S TY+LL+DAHLI RD KSAL V++DM+ +GF P+RE LKK
Sbjct: 523 EATNVFEHLVSIGVKPDSRTYSLLVDAHLINRDPKSALTVVDDMIKAGFEPSRETLKK 580



 Score = 58.2 bits (139), Expect(2) = 3e-22
 Identities = 28/45 (62%), Positives = 33/45 (73%)
 Frame = -3

Query: 421 RRRCVREMDTESDKLMNALAKRFGINMRSEKRSNTLFELDYTRVR 287
           RRRCVREMD E+D  + ALAK+F I M SE R N LF +DY+R R
Sbjct: 582 RRRCVREMDDENDDQVEALAKKFQIRMGSENRRNMLFNIDYSRGR 626


>gb|AAM61409.1| unknown [Arabidopsis thaliana]
          Length = 630

 Score = 73.2 bits (178), Expect(2) = 3e-22
 Identities = 33/58 (56%), Positives = 45/58 (77%)
 Frame = -1

Query: 672 EALMLFDHFKGLGIKANSTTYALLIDAHLIARDQKSALCVIEDMVLSGFAPTREILKK 499
           EA  +F+H   +G+K +S TY+LL+DAHLI RD KSAL V++DM+ +GF P+RE LKK
Sbjct: 523 EATNVFEHLVSIGVKPDSRTYSLLVDAHLINRDPKSALTVVDDMIKAGFEPSRETLKK 580



 Score = 58.2 bits (139), Expect(2) = 3e-22
 Identities = 28/45 (62%), Positives = 33/45 (73%)
 Frame = -3

Query: 421 RRRCVREMDTESDKLMNALAKRFGINMRSEKRSNTLFELDYTRVR 287
           RRRCVREMD E+D  + ALAK+F I M SE R N LF +DY+R R
Sbjct: 582 RRRCVREMDDENDDQVEALAKKFQIRMGSENRRNMLFNIDYSRGR 626


>ref|XP_002893403.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297339245|gb|EFH69662.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 630

 Score = 73.2 bits (178), Expect(2) = 7e-22
 Identities = 33/58 (56%), Positives = 45/58 (77%)
 Frame = -1

Query: 672 EALMLFDHFKGLGIKANSTTYALLIDAHLIARDQKSALCVIEDMVLSGFAPTREILKK 499
           EA  +F+H   +G+K +S TY+LL+DAHLI RD KSAL V++DM+ +GF P+RE LKK
Sbjct: 523 EATNVFEHLVSIGVKPDSRTYSLLVDAHLINRDPKSALTVVDDMIKAGFEPSRETLKK 580



 Score = 56.6 bits (135), Expect(2) = 7e-22
 Identities = 27/45 (60%), Positives = 33/45 (73%)
 Frame = -3

Query: 421 RRRCVREMDTESDKLMNALAKRFGINMRSEKRSNTLFELDYTRVR 287
           RRRCVREMD E+D  + ALAK+F I M +E R N LF +DY+R R
Sbjct: 582 RRRCVREMDYENDDQVEALAKKFQIRMGTENRRNMLFNIDYSRGR 626


>ref|XP_002274321.2| PREDICTED: pentatricopeptide repeat-containing protein At1g26460,
           mitochondrial-like [Vitis vinifera]
           gi|297738080|emb|CBI27281.3| unnamed protein product
           [Vitis vinifera]
          Length = 616

 Score = 75.9 bits (185), Expect(2) = 2e-19
 Identities = 35/58 (60%), Positives = 48/58 (82%)
 Frame = -1

Query: 672 EALMLFDHFKGLGIKANSTTYALLIDAHLIARDQKSALCVIEDMVLSGFAPTREILKK 499
           EA  +F+H   LGIK N+ +++LL+DAHLI RDQK+AL VIE+M+ +GFAP++EILKK
Sbjct: 512 EASRVFEHLTSLGIKPNAMSFSLLVDAHLINRDQKAALSVIEEMINAGFAPSKEILKK 569



 Score = 45.8 bits (107), Expect(2) = 2e-19
 Identities = 21/41 (51%), Positives = 29/41 (70%)
 Frame = -3

Query: 421 RRRCVREMDTESDKLMNALAKRFGINMRSEKRSNTLFELDY 299
           RRRC+REMD ES+  + +LA++F I M +E R + LF L Y
Sbjct: 571 RRRCIREMDYESNDQVESLARKFKIRMGTENRRDMLFNLAY 611


>ref|XP_004144175.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26460,
           mitochondrial-like [Cucumis sativus]
           gi|449489211|ref|XP_004158247.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g26460,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score = 77.0 bits (188), Expect(2) = 7e-19
 Identities = 36/58 (62%), Positives = 47/58 (81%)
 Frame = -1

Query: 672 EALMLFDHFKGLGIKANSTTYALLIDAHLIARDQKSALCVIEDMVLSGFAPTREILKK 499
           EA  +F+H  GLGIK N+T+Y+LL DAHLI RD KSAL  I++MV +GFAP++E+LKK
Sbjct: 513 EAARVFEHLVGLGIKPNATSYSLLADAHLINRDPKSALAAIDNMVTAGFAPSKELLKK 570



 Score = 42.7 bits (99), Expect(2) = 7e-19
 Identities = 20/41 (48%), Positives = 27/41 (65%)
 Frame = -3

Query: 421 RRRCVREMDTESDKLMNALAKRFGINMRSEKRSNTLFELDY 299
           RRRC+RE D +S+  +  LA+ F I M SE R + LF L+Y
Sbjct: 572 RRRCIREQDYDSNDKVGNLAQNFKIRMGSESRRDILFNLNY 612