BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00008514
         (2764 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [...   706   0.0  
dbj|BAA88921.1| sigma factor [Nicotiana tabacum]                      692   0.0  
ref|XP_002325882.1| predicted protein [Populus trichocarpa] gi|2...   677   0.0  
dbj|BAA88922.1| sigma factor [Nicotiana tabacum]                      664   0.0  
ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-lik...   662   0.0  

>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 508

 Score =  706 bits (1821), Expect = 0.0
 Identities = 366/507 (72%), Positives = 428/507 (84%), Gaps = 2/507 (0%)
 Frame = +3

Query: 249  MATTAVIGLSAGKRLLSSSVYYSDLAEKFSSSNDIGFSHHQVTSSKNVISAKKS-NYSSN 425
            MAT AVIGLSAGKRLLSS+ YYSDL EK SS+N+ G +H+Q+TS+K +I AKKS NY  +
Sbjct: 1    MATAAVIGLSAGKRLLSSTFYYSDLTEKLSSANEHGLTHYQITSTKTLIVAKKSSNYGPS 60

Query: 426  F-LSNRDHKSIKALKEHVDTASVPSNLEPWFQSSNNLEVEVSDFDCSVDAILLLQKSMLE 602
            F  SNR+ +SIKALKEHVDTAS PS     F++ N++E E SD D SV+A+LLLQKSMLE
Sbjct: 61   FPSSNRNTQSIKALKEHVDTASAPSTAATQFKTFNDMEEESSDLDYSVEALLLLQKSMLE 120

Query: 603  KQWKLSPEETMINPKFREKTRKKIQVTGSGISAXXXXXXXXXXVLNQRSPHIELNTRKQQ 782
            KQW LS E T  +     K++KKI VT SG+SA           L+Q    ++ N  KQ 
Sbjct: 121  KQWNLSFERTDSSDSPSRKSQKKIPVTCSGVSARQRRINIRRKNLSQSKFTVQANVFKQL 180

Query: 783  ASVISPKLVQNHMKSYVKGVISEELLTHTEVVHLSKRIKTGLHIEERKSRLEERLGCEPS 962
             S +SP+L+QN +K YVKGV+SEELL+H EVV LS+ IK GL +E+ KSRL+ERLGC+PS
Sbjct: 181  KSAVSPELLQNRLKGYVKGVVSEELLSHAEVVRLSRIIKAGLSLEDHKSRLKERLGCDPS 240

Query: 963  EEQLSASLNISRAELQATIMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 1142
            +EQ++ SL ISRAELQ+  + CSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI
Sbjct: 241  DEQVATSLKISRAELQSKSIACSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300

Query: 1143 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRNAKAKL 1322
            GLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALVENSRTLRLP HLHERL LIRNAK +L
Sbjct: 301  GLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKIRL 360

Query: 1323 EDRGITPSVAKIAECLNMSQKKVRNATEAVNRVYSLDREAFPSLNGLPGDTLHSYIADNH 1502
            E++G+TPS+ +IAE LN+SQKKVRNATEAV++V+SLDREAFPSLNGLPG+T HSYIADN 
Sbjct: 361  EEKGVTPSIDRIAESLNISQKKVRNATEAVSKVFSLDREAFPSLNGLPGETHHSYIADNC 420

Query: 1503 LENNPWHGVDEWALKDEVNKLMSTTLRERERDIIRLYYGLDNETLTWEDISRRIGLSRER 1682
            LENNPWHGVD+WALKDEVNKL++ TL+ERE++IIRLYYGLDNE+LTWEDIS+RIGLSRER
Sbjct: 421  LENNPWHGVDDWALKDEVNKLINLTLQEREQEIIRLYYGLDNESLTWEDISKRIGLSRER 480

Query: 1683 VRQVGLVALEKLKHAARRKRLEAMLVK 1763
            VRQVGLVALEKLKHAAR+K+LEAMLVK
Sbjct: 481  VRQVGLVALEKLKHAARKKKLEAMLVK 507


>dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
          Length = 508

 Score =  692 bits (1785), Expect = 0.0
 Identities = 355/507 (70%), Positives = 421/507 (83%), Gaps = 1/507 (0%)
 Frame = +3

Query: 249  MATTAVIGLSAGKRLLSSSVYYSDLAEKFSSSNDIGFSHHQVTSSKNVISAKKSN-YSSN 425
            M+T AVIGLSAGKRLLSSS YYSDL EK + ++D     H V S KNVI+AKKS+ YS +
Sbjct: 2    MSTAAVIGLSAGKRLLSSSFYYSDLNEKLTCTSDHSLPCHHVPSIKNVITAKKSSDYSPS 61

Query: 426  FLSNRDHKSIKALKEHVDTASVPSNLEPWFQSSNNLEVEVSDFDCSVDAILLLQKSMLEK 605
             +S+R  +S K+LKEHVD  + PS++  WF+    L+ E  D D SV+ +LLLQKSMLEK
Sbjct: 62   CVSSRKSQSAKSLKEHVDITADPSDVPSWFEMYEQLQNESDDEDESVEVLLLLQKSMLEK 121

Query: 606  QWKLSPEETMINPKFREKTRKKIQVTGSGISAXXXXXXXXXXVLNQRSPHIELNTRKQQA 785
            QW LS E+T+      EK  KK+ +T SG SA          VL++ S     +  K   
Sbjct: 122  QWNLSLEQTLTASPQHEKKSKKMHITCSGTSARRRRMDSRQRVLDRHSSATPTSAAKPLR 181

Query: 786  SVISPKLVQNHMKSYVKGVISEELLTHTEVVHLSKRIKTGLHIEERKSRLEERLGCEPSE 965
            S+I P+L+QN +K YVKGV+SEELLTH EV+ LSK+I+ GL++EE+KSRL+ERLGCEPS+
Sbjct: 182  SIIGPELLQNRLKGYVKGVVSEELLTHAEVLQLSKKIQVGLYLEEQKSRLKERLGCEPSD 241

Query: 966  EQLSASLNISRAELQATIMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIG 1145
            +QL+ SL +SR +LQ+T++ECSLARE+LAMSNVRLVMSIAQRYDN+GAEMADLVQGGLIG
Sbjct: 242  DQLAVSLKMSRTDLQSTLIECSLARERLAMSNVRLVMSIAQRYDNVGAEMADLVQGGLIG 301

Query: 1146 LLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRNAKAKLE 1325
            LLRGIEKFD SKG+KISTYVYWWIRQGVSRALVENSRTLRLPT+LHERLSLIRNAKA+LE
Sbjct: 302  LLRGIEKFDPSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLSLIRNAKARLE 361

Query: 1326 DRGITPSVAKIAECLNMSQKKVRNATEAVNRVYSLDREAFPSLNGLPGDTLHSYIADNHL 1505
            ++GITPSV  IA  LNMSQKKVRNATEA +++YSLDREAFPSLNGLPG+TLHSYIADNHL
Sbjct: 362  EKGITPSVNNIAASLNMSQKKVRNATEASSKMYSLDREAFPSLNGLPGETLHSYIADNHL 421

Query: 1506 ENNPWHGVDEWALKDEVNKLMSTTLRERERDIIRLYYGLDNETLTWEDISRRIGLSRERV 1685
            ENNPWHGVD WALKDEVN L+S+TLR+RER+IIRLYYGLDNE LTWEDIS+RIGLSRERV
Sbjct: 422  ENNPWHGVDVWALKDEVNNLISSTLRDREREIIRLYYGLDNECLTWEDISKRIGLSRERV 481

Query: 1686 RQVGLVALEKLKHAARRKRLEAMLVKQ 1766
            RQVGLVALEKLKHAAR+++L+AML+KQ
Sbjct: 482  RQVGLVALEKLKHAARKRQLDAMLIKQ 508


>ref|XP_002325882.1| predicted protein [Populus trichocarpa] gi|222862757|gb|EEF00264.1|
            predicted protein [Populus trichocarpa]
          Length = 509

 Score =  677 bits (1746), Expect = 0.0
 Identities = 352/507 (69%), Positives = 415/507 (81%), Gaps = 2/507 (0%)
 Frame = +3

Query: 249  MATTAVIGLSAGKRLLSSSVYYSDLAEKFSSSNDIGFSHHQVTSSKNVISAKKS-NYSSN 425
            MAT AVIGLS+GKRLLSSS YYSDL EK S+ ND G +++   ++KNVI AKKS NY  +
Sbjct: 2    MATAAVIGLSSGKRLLSSSFYYSDLTEKLSNVNDHGITYYPTATTKNVIVAKKSSNYGPS 61

Query: 426  F-LSNRDHKSIKALKEHVDTASVPSNLEPWFQSSNNLEVEVSDFDCSVDAILLLQKSMLE 602
            F  SNR+  SIKALKEHVDTAS  SN+  WF++ ++ E E S  D SV+A+LLLQKSMLE
Sbjct: 62   FPSSNRNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSMLE 121

Query: 603  KQWKLSPEETMINPKFREKTRKKIQVTGSGISAXXXXXXXXXXVLNQRSPHIELNTRKQQ 782
            KQW LS E T  +    +K  KKI VT SG+SA            NQ     + +  K  
Sbjct: 122  KQWNLSFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRKNQNQSKFMSQSSDFKFL 181

Query: 783  ASVISPKLVQNHMKSYVKGVISEELLTHTEVVHLSKRIKTGLHIEERKSRLEERLGCEPS 962
             SV SP L+QN +K YVKGV+S+E+L HTEVV LS+ I+ GL  E+ KSRL+ERLGCEPS
Sbjct: 182  RSVSSPDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKERLGCEPS 241

Query: 963  EEQLSASLNISRAELQATIMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 1142
            +EQ++ SL ISRA+LQ+ +++CSLAREKLAMSNVRLVMSIAQ+YDNMGAEMADLVQGGLI
Sbjct: 242  DEQIADSLRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADLVQGGLI 301

Query: 1143 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRNAKAKL 1322
            GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALV+NSRTLRLP HLHERL LIRNAK +L
Sbjct: 302  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIRL 361

Query: 1323 EDRGITPSVAKIAECLNMSQKKVRNATEAVNRVYSLDREAFPSLNGLPGDTLHSYIADNH 1502
            E++G+TPS+ +IAE LNMSQ+KVRNATEA+++V+SLDREAFPSLNGLPG+T HSYIADN 
Sbjct: 362  EEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR 421

Query: 1503 LENNPWHGVDEWALKDEVNKLMSTTLRERERDIIRLYYGLDNETLTWEDISRRIGLSRER 1682
             ENNPWHGVDEWALK+EVNKL+ +TL+ERE++IIRLY+GLD E LTWEDIS+R+GLSRER
Sbjct: 422  PENNPWHGVDEWALKEEVNKLIDSTLQEREKEIIRLYHGLDQECLTWEDISKRMGLSRER 481

Query: 1683 VRQVGLVALEKLKHAARRKRLEAMLVK 1763
            VRQVGLVALEKLKHAAR++  EAMLVK
Sbjct: 482  VRQVGLVALEKLKHAARKRNTEAMLVK 508


>dbj|BAA88922.1| sigma factor [Nicotiana tabacum]
          Length = 502

 Score =  664 bits (1714), Expect = 0.0
 Identities = 350/503 (69%), Positives = 406/503 (80%), Gaps = 2/503 (0%)
 Frame = +3

Query: 261  AVIGLSAGKRLLSSSVYYSDLAEKFSSSNDIGFSHHQVTSSKNVISAKKS-NYSSNFLSN 437
            A+IGLSAG R+LSSS YYS L EKF  S D     H   S KNVI+AK S NYS +++SN
Sbjct: 3    AIIGLSAGNRILSSSFYYSVLTEKFCVS-DHALPCHHFPSPKNVINAKNSSNYSPSYVSN 61

Query: 438  RDHKSIKALKEHVDTASV-PSNLEPWFQSSNNLEVEVSDFDCSVDAILLLQKSMLEKQWK 614
            R  +S+KALKEHVD AS   S+ EPW Q    L+      + SV+ +LLLQKSMLEKQW 
Sbjct: 62   RKKQSVKALKEHVDIASNRDSDTEPWVQMFKQLQNGSCSEEDSVEVLLLLQKSMLEKQWN 121

Query: 615  LSPEETMINPKFREKTRKKIQVTGSGISAXXXXXXXXXXVLNQRSPHIELNTRKQQASVI 794
            LS E+ M N       +KK+Q+T SG SA           L  ++     ++ K+  SVI
Sbjct: 122  LSAEKAMTN---ENNCKKKMQITCSGTSARRRRMDTRKRDLLPKNSATSDSSSKRLRSVI 178

Query: 795  SPKLVQNHMKSYVKGVISEELLTHTEVVHLSKRIKTGLHIEERKSRLEERLGCEPSEEQL 974
             P+L+QN  K Y+ GV+ +ELLTHTEVV LSK+IK GL++EE+KSRL+ERLGCEPS++QL
Sbjct: 179  GPELLQNRSKGYINGVVGQELLTHTEVVQLSKKIKFGLYLEEQKSRLKERLGCEPSDDQL 238

Query: 975  SASLNISRAELQATIMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLR 1154
            + SL ISRA+L++T++ECSLAREKLAMSNVRLVMSIAQRYD  G EMADL+QGGLIGLLR
Sbjct: 239  AISLKISRADLRSTLIECSLAREKLAMSNVRLVMSIAQRYDTNGTEMADLIQGGLIGLLR 298

Query: 1155 GIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRNAKAKLEDRG 1334
            GIEKFD S+GFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERLSLIRNAK KL++ G
Sbjct: 299  GIEKFDHSRGFKISTYVYWWIRQGVSRALVENSRTLRLPIHLHERLSLIRNAKIKLKENG 358

Query: 1335 ITPSVAKIAECLNMSQKKVRNATEAVNRVYSLDREAFPSLNGLPGDTLHSYIADNHLENN 1514
            ITPS+ KIAECLNMSQKKVRNATEA ++V+SLDREAFPSLNGLPG+TLHSYIADN LEN 
Sbjct: 359  ITPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAFPSLNGLPGETLHSYIADNRLENI 418

Query: 1515 PWHGVDEWALKDEVNKLMSTTLRERERDIIRLYYGLDNETLTWEDISRRIGLSRERVRQV 1694
            PWHGVDEW LKDEVN L+S+TLRERER+I+RLYYGLDNE LTWEDISRRIGLSRERVRQV
Sbjct: 419  PWHGVDEWMLKDEVNNLISSTLREREREIVRLYYGLDNECLTWEDISRRIGLSRERVRQV 478

Query: 1695 GLVALEKLKHAARRKRLEAMLVK 1763
            GLVALEKLKHAAR++RL+AMLVK
Sbjct: 479  GLVALEKLKHAARKRRLDAMLVK 501


>ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-like isoform 2 [Vitis
            vinifera]
          Length = 497

 Score =  662 bits (1709), Expect = 0.0
 Identities = 359/513 (69%), Positives = 418/513 (81%), Gaps = 8/513 (1%)
 Frame = +3

Query: 249  MATTAVIGLSAGKRLLSSSVYYSDLAEKFSSS-NDIGFSHHQVTSSKNVISAKK-SNYSS 422
            M T AVIGLSAG RLL+SS +YSD+AEK SS  ND+GF HH     KN+ISAKK SNY+ 
Sbjct: 2    MGTAAVIGLSAGNRLLASSHHYSDVAEKLSSYVNDVGFPHHPSPPPKNLISAKKPSNYTP 61

Query: 423  NFLSNRDHKSIKALKEHVDTASVPSNLEPWFQSSNNLEVEVSDFDCSVDAILLLQKSMLE 602
            +  SNR  +S+KALKEHV++AS PS  +P   SS++   EV D +  V+A LLLQKSMLE
Sbjct: 62   S--SNRSIQSMKALKEHVESASAPSTADPDLSSSSS---EVEDEEYLVEAFLLLQKSMLE 116

Query: 603  KQWKLS------PEETMINPKFREKTRKKIQVTGSGISAXXXXXXXXXXVLNQRSPHIEL 764
            KQW LS       EE  +  K R+K R   +VT SG SA          V+N++S     
Sbjct: 117  KQWNLSFEEEEEEEEEDMGKKARQKRR---EVTCSGTSARQRRISGRKRVMNEKS----- 168

Query: 765  NTRKQQASVISPKLVQNHMKSYVKGVISEELLTHTEVVHLSKRIKTGLHIEERKSRLEER 944
                 ++ V +   V+N +K YVKGV+SEELLTH +VV LS +IK GL +E+ KSRL+ER
Sbjct: 169  -----KSRVRAALGVENRLKGYVKGVVSEELLTHAQVVLLSNKIKAGLLLEDHKSRLKER 223

Query: 945  LGCEPSEEQLSASLNISRAELQATIMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADL 1124
            +G EP++EQ++ASL +SRAELQ+ ++ECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADL
Sbjct: 224  IGSEPTDEQVAASLRMSRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADL 283

Query: 1125 VQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIR 1304
            VQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP+HLHERLSLIR
Sbjct: 284  VQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERLSLIR 343

Query: 1305 NAKAKLEDRGITPSVAKIAECLNMSQKKVRNATEAVNRVYSLDREAFPSLNGLPGDTLHS 1484
            NAK +LE++GITPS+ +IAECLNMSQKKVRNATEA+++V+SLDREAFPSLNGLPG+TLHS
Sbjct: 344  NAKIRLEEKGITPSIDRIAECLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHS 403

Query: 1485 YIADNHLENNPWHGVDEWALKDEVNKLMSTTLRERERDIIRLYYGLDNETLTWEDISRRI 1664
            YIAD  LENNPWHGVDEWALKDEVNKL++TTL ERERDIIRLYYGLDNE LTWEDIS+RI
Sbjct: 404  YIADVRLENNPWHGVDEWALKDEVNKLINTTLGERERDIIRLYYGLDNECLTWEDISKRI 463

Query: 1665 GLSRERVRQVGLVALEKLKHAARRKRLEAMLVK 1763
            GLSRERVRQVGLVALEKLK+AAR+ R+EAMLVK
Sbjct: 464  GLSRERVRQVGLVALEKLKNAARKGRMEAMLVK 496