BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00008423
         (688 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containi...   184   1e-44
ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containi...   167   2e-39
emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]   164   2e-38
ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containi...   161   1e-37
ref|NP_172461.1| pentatricopeptide repeat-containing protein [Ar...   157   2e-36

>ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  184 bits (468), Expect = 1e-44
 Identities = 104/211 (49%), Positives = 132/211 (62%)
 Frame = +3

Query: 54  MDSVVPAQQTREGLCLFHSVYKDSRKIHTLGSKVRVRICSNIGSVKVFDGDKSCLFVLSC 233
           MD +VP  QT EGL     V++++     LG++ R R  SN+       G K+    LS 
Sbjct: 1   MDLIVPVSQTHEGLYSLQHVHRENTTKTCLGTRARFR--SNLVL-----GYKARFLALSD 53

Query: 234 GSGNGLXXXXXXXXXXXXCISAIAKSESFGSNGQVVSNLDFRXXXXXXXXXXXYATRSYE 413
           G+ N               + A  ++++F SN ++      +            ++ S E
Sbjct: 54  GTSNECKKIGGSRNQRRNQVFAALRADTFSSNDKLPYAEKNQHVHLSGGNYTSNSSSSIE 113

Query: 414 EYERNNHFRSLIRNGELEEGFKHLESMVYRGDIPDIIPCTSLIRGFCRVRKTKKATRVLE 593
           E+E NNH R L+RNGELE+GFK LESMVYRGDIPDIIPCTSLIRGFCR+ KTKKAT V+E
Sbjct: 114 EHESNNHLRRLVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVME 173

Query: 594 IIEESGAVPDVITYNVLISGYCKLGEIENAL 686
           I+E+SGAVPDVITYNVLISGYCK GEI+NAL
Sbjct: 174 ILEQSGAVPDVITYNVLISGYCKSGEIDNAL 204



 Score = 63.5 bits (153), Expect = 4e-08
 Identities = 30/87 (34%), Positives = 52/87 (59%)
 Frame = +3

Query: 426 NNHFRSLIRNGELEEGFKHLESMVYRGDIPDIIPCTSLIRGFCRVRKTKKATRVLEIIEE 605
           N   R+L  +G+L++  + L+  + +   PD+I  T LI   C+     +A ++L+ +  
Sbjct: 220 NTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRN 279

Query: 606 SGAVPDVITYNVLISGYCKLGEIENAL 686
            G+ PDV+TYNVLI+G CK G ++ A+
Sbjct: 280 KGSKPDVVTYNVLINGICKEGRLDEAI 306



 Score = 59.3 bits (142), Expect = 7e-07
 Identities = 28/81 (34%), Positives = 44/81 (54%)
 Frame = +3

Query: 444 LIRNGELEEGFKHLESMVYRGDIPDIIPCTSLIRGFCRVRKTKKATRVLEIIEESGAVPD 623
           L R G L      LE M   G  P+ +    L+ GFC+ +K  +A   L+I+   G  PD
Sbjct: 366 LCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPD 425

Query: 624 VITYNVLISGYCKLGEIENAL 686
           ++TYN L++  CK G+++ A+
Sbjct: 426 IVTYNTLLTALCKDGKVDVAV 446


>ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  167 bits (422), Expect = 2e-39
 Identities = 101/216 (46%), Positives = 128/216 (59%), Gaps = 5/216 (2%)
 Frame = +3

Query: 54  MDSVVPAQQTREGLCLFHSVYKDSRKIHTLGSKVRVRICSNIGSVKVFDGDKSCLFVL-S 230
           MD  +PA+   +G CLFH     +R    +    + R+ S   S+++  G+K   FV+ S
Sbjct: 1   MDLTLPAKHYTDGFCLFHRHTAKNRDRRVMA---KGRVSSETNSLRLHAGEKGRFFVIPS 57

Query: 231 CGSGNGLXXXXXXXXXXXXCISAIAKSESFGSNGQVV---SNLDFRXXXXXXXXXXXYA- 398
            GS   L             + A+ + ++F SNG++     NL                 
Sbjct: 58  YGSEEQL-------------VRAVPRVDTFSSNGRLSHGEKNLHTHLNGSSSSSSSYSNH 104

Query: 399 TRSYEEYERNNHFRSLIRNGELEEGFKHLESMVYRGDIPDIIPCTSLIRGFCRVRKTKKA 578
           ++S EE E NNH R L+RNGELEEGFK LE MV RGDIPDII CTSLIRG C+  KT KA
Sbjct: 105 SQSSEEVENNNHLRRLVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKA 164

Query: 579 TRVLEIIEESGAVPDVITYNVLISGYCKLGEIENAL 686
           TRV+EI+E+SGAVPDVITYNVLISGYCK GEI +AL
Sbjct: 165 TRVMEILEDSGAVPDVITYNVLISGYCKTGEIGSAL 200



 Score = 66.2 bits (160), Expect = 6e-09
 Identities = 32/87 (36%), Positives = 52/87 (59%)
 Frame = +3

Query: 426 NNHFRSLIRNGELEEGFKHLESMVYRGDIPDIIPCTSLIRGFCRVRKTKKATRVLEIIEE 605
           N   R+L  +G+L+E  + L+  + R   PD+I  T LI   C+     +A ++L+ + +
Sbjct: 216 NTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRD 275

Query: 606 SGAVPDVITYNVLISGYCKLGEIENAL 686
            G  PDV+TYNVLI+G CK G ++ A+
Sbjct: 276 KGCKPDVVTYNVLINGICKEGRLDEAI 302



 Score = 56.6 bits (135), Expect = 4e-06
 Identities = 27/87 (31%), Positives = 48/87 (55%)
 Frame = +3

Query: 426 NNHFRSLIRNGELEEGFKHLESMVYRGDIPDIIPCTSLIRGFCRVRKTKKATRVLEIIEE 605
           N    +L ++ ++E   ++L+ MV RG  PDI+   +L+   C+  K   A  +L  +  
Sbjct: 391 NPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGS 450

Query: 606 SGAVPDVITYNVLISGYCKLGEIENAL 686
            G  P +ITYN +I G  K+G+ ++A+
Sbjct: 451 KGCSPVLITYNTVIDGLSKVGKTDDAI 477


>emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  164 bits (415), Expect = 2e-38
 Identities = 78/97 (80%), Positives = 88/97 (90%)
 Frame = +3

Query: 396 ATRSYEEYERNNHFRSLIRNGELEEGFKHLESMVYRGDIPDIIPCTSLIRGFCRVRKTKK 575
           ++ S EE+E NNH R L+RNGELE+GFK LESMVYRGDIPDIIPCTSLIRGFCR+ KTKK
Sbjct: 51  SSSSIEEHESNNHLRRLVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKK 110

Query: 576 ATRVLEIIEESGAVPDVITYNVLISGYCKLGEIENAL 686
           AT V+EI+E+SGAVPDVITYNVLISGYCK GEI+NAL
Sbjct: 111 ATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNAL 147



 Score = 63.5 bits (153), Expect = 4e-08
 Identities = 30/87 (34%), Positives = 52/87 (59%)
 Frame = +3

Query: 426 NNHFRSLIRNGELEEGFKHLESMVYRGDIPDIIPCTSLIRGFCRVRKTKKATRVLEIIEE 605
           N   R+L  +G+L++  + L+  + +   PD+I  T LI   C+     +A ++L+ +  
Sbjct: 163 NTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRN 222

Query: 606 SGAVPDVITYNVLISGYCKLGEIENAL 686
            G+ PDV+TYNVLI+G CK G ++ A+
Sbjct: 223 KGSKPDVVTYNVLINGICKEGRLDEAI 249



 Score = 59.3 bits (142), Expect = 7e-07
 Identities = 28/81 (34%), Positives = 44/81 (54%)
 Frame = +3

Query: 444 LIRNGELEEGFKHLESMVYRGDIPDIIPCTSLIRGFCRVRKTKKATRVLEIIEESGAVPD 623
           L R G L      LE M   G  P+ +    L+ GFC+ +K  +A   L+I+   G  PD
Sbjct: 309 LCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPD 368

Query: 624 VITYNVLISGYCKLGEIENAL 686
           ++TYN L++  CK G+++ A+
Sbjct: 369 IVTYNTLLTALCKDGKVDVAV 389


>ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  161 bits (407), Expect = 1e-37
 Identities = 83/137 (60%), Positives = 99/137 (72%), Gaps = 5/137 (3%)
 Frame = +3

Query: 291 ISAIAKSESFGSNG---QVVS--NLDFRXXXXXXXXXXXYATRSYEEYERNNHFRSLIRN 455
           +SA++KSE+ G NG   Q+VS  N D               +RS+EE+  N H R L+RN
Sbjct: 60  VSAVSKSEASGLNGRLQQIVSTPNGDLNVIGMESSPIGVNGSRSFEEFASNIHLRKLVRN 119

Query: 456 GELEEGFKHLESMVYRGDIPDIIPCTSLIRGFCRVRKTKKATRVLEIIEESGAVPDVITY 635
           GELEEG K LE M+Y+GDIPD+I CTSLIRGFCR  KTKKATR++EI+E SGAVPDVITY
Sbjct: 120 GELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITY 179

Query: 636 NVLISGYCKLGEIENAL 686
           NVLI GYCK GEI+ AL
Sbjct: 180 NVLIGGYCKSGEIDKAL 196



 Score = 65.9 bits (159), Expect = 7e-09
 Identities = 33/87 (37%), Positives = 51/87 (58%)
 Frame = +3

Query: 426 NNHFRSLIRNGELEEGFKHLESMVYRGDIPDIIPCTSLIRGFCRVRKTKKATRVLEIIEE 605
           N   RSL  +G+L+E  + L+  + R   PD+I  T LI   C      +A ++L+ + +
Sbjct: 212 NTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRK 271

Query: 606 SGAVPDVITYNVLISGYCKLGEIENAL 686
            G  PDV+TYNVLI+G CK G ++ A+
Sbjct: 272 KGCKPDVVTYNVLINGICKEGRLDEAI 298



 Score = 58.5 bits (140), Expect = 1e-06
 Identities = 28/81 (34%), Positives = 44/81 (54%)
 Frame = +3

Query: 444 LIRNGELEEGFKHLESMVYRGDIPDIIPCTSLIRGFCRVRKTKKATRVLEIIEESGAVPD 623
           L R   L      LE M   G +P+ +    L+ GFC+ +K  +A   LEI+   G  PD
Sbjct: 358 LCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPD 417

Query: 624 VITYNVLISGYCKLGEIENAL 686
           ++TYN L++  CK G+++ A+
Sbjct: 418 IVTYNTLLTALCKDGKVDAAV 438


>ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g09900 gi|332190391|gb|AEE28512.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  157 bits (396), Expect = 2e-36
 Identities = 93/215 (43%), Positives = 122/215 (56%), Gaps = 4/215 (1%)
 Frame = +3

Query: 54  MDSVVPAQQTREGLCLFHSVYKDSRKIHTLGSKVRVRICSNIGSVKVFDGDKSCLFVLSC 233
           MD +V     +EG CL    +++ ++    G+K+ V  C   GS+       S    L  
Sbjct: 1   MDLMVSTSSAQEGFCLIQQFHREYKR----GNKLDVS-CRTSGSI-------SSKIPLGS 48

Query: 234 GSGNGLXXXXXXXXXXXXCISAIAKSESFGSNGQVVSNLDFRXXXXXXXXXXXYATRS-- 407
              N L             +SA +K ES G NG+                   Y++ +  
Sbjct: 49  RKRNRLVL-----------VSAASKVESSGLNGRAQKFETLSSGYSNSNGNGHYSSVNSS 97

Query: 408 --YEEYERNNHFRSLIRNGELEEGFKHLESMVYRGDIPDIIPCTSLIRGFCRVRKTKKAT 581
              E+ E NNH R ++R GELEEGFK LE+MVY G++PDIIPCT+LIRGFCR+ KT+KA 
Sbjct: 98  FALEDVESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAA 157

Query: 582 RVLEIIEESGAVPDVITYNVLISGYCKLGEIENAL 686
           ++LEI+E SGAVPDVITYNV+ISGYCK GEI NAL
Sbjct: 158 KILEILEGSGAVPDVITYNVMISGYCKAGEINNAL 192



 Score = 68.6 bits (166), Expect = 1e-09
 Identities = 33/87 (37%), Positives = 52/87 (59%)
 Frame = +3

Query: 426 NNHFRSLIRNGELEEGFKHLESMVYRGDIPDIIPCTSLIRGFCRVRKTKKATRVLEIIEE 605
           N   RSL  +G+L++  + L+ M+ R   PD+I  T LI   CR      A ++L+ + +
Sbjct: 208 NTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRD 267

Query: 606 SGAVPDVITYNVLISGYCKLGEIENAL 686
            G  PDV+TYNVL++G CK G ++ A+
Sbjct: 268 RGCTPDVVTYNVLVNGICKEGRLDEAI 294



 Score = 58.9 bits (141), Expect = 9e-07
 Identities = 28/81 (34%), Positives = 44/81 (54%)
 Frame = +3

Query: 444 LIRNGELEEGFKHLESMVYRGDIPDIIPCTSLIRGFCRVRKTKKATRVLEIIEESGAVPD 623
           L R G L      LE M   G  P+ +    L+ GFC+ +K  +A   LE +   G  PD
Sbjct: 354 LCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPD 413

Query: 624 VITYNVLISGYCKLGEIENAL 686
           ++TYN +++  CK G++E+A+
Sbjct: 414 IVTYNTMLTALCKDGKVEDAV 434