BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00008340
         (364 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   145   3e-33
ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containi...   145   3e-33
ref|XP_002306730.1| predicted protein [Populus trichocarpa] gi|2...   130   1e-28
ref|XP_002527112.1| pentatricopeptide repeat-containing protein,...   127   1e-27
ref|XP_002891080.1| pentatricopeptide repeat-containing protein ...   124   8e-27

>ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  145 bits (367), Expect = 3e-33
 Identities = 71/119 (59%), Positives = 96/119 (80%), Gaps = 2/119 (1%)
 Frame = +2

Query: 14  SKLLDLCASSAAGDLSYAAYIFRQLQFPTTNDWNAIIRGLAKTPQPSDAITWFVAMSRAS 193
           +KLL+LCA S+ GDLSYA +IFR + +P+TNDWNA+IRG A +  P++A+ W+ AM+ ++
Sbjct: 37  TKLLELCAISSFGDLSYALHIFRYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASN 96

Query: 194 C--KPDALTCSFALKACARALARFEATEIQSQVVRYGFVNDLLLQTTLVDVYAKSGDLE 364
              + DALTCSFALKACARALAR EA ++ SQ++R+GF  D+LLQTTL+D YAK GDL+
Sbjct: 97  GLHRIDALTCSFALKACARALARSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLD 155



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 1/113 (0%)
 Frame = +2

Query: 29  LCASSAAGDLSYAAYIFRQLQFPTTNDWNAIIRGLAKTPQPSDAITWFVAMS-RASCKPD 205
           L A +  GDL  A  +F ++  P    WNA+I G A+  +P+DAI  F  M    + +P+
Sbjct: 145 LDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPN 204

Query: 206 ALTCSFALKACARALARFEATEIQSQVVRYGFVNDLLLQTTLVDVYAKSGDLE 364
           A+T   AL AC++  A  E   +   +V     +++ +   ++D+YAK G ++
Sbjct: 205 AVTVQGALLACSQLGALKEGESVHKYIVEEKLDSNVQVCNVVIDMYAKCGSMD 257


>ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  145 bits (367), Expect = 3e-33
 Identities = 71/119 (59%), Positives = 96/119 (80%), Gaps = 2/119 (1%)
 Frame = +2

Query: 14  SKLLDLCASSAAGDLSYAAYIFRQLQFPTTNDWNAIIRGLAKTPQPSDAITWFVAMSRAS 193
           +KLL+LCA S+ GDLSYA +IFR + +P+TNDWNA+IRG A +  P++A+ W+ AM+ ++
Sbjct: 37  TKLLELCAISSFGDLSYALHIFRYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASN 96

Query: 194 C--KPDALTCSFALKACARALARFEATEIQSQVVRYGFVNDLLLQTTLVDVYAKSGDLE 364
              + DALTCSFALKACARALAR EA ++ SQ++R+GF  D+LLQTTL+D YAK GDL+
Sbjct: 97  GLHRIDALTCSFALKACARALARSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLD 155



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 1/113 (0%)
 Frame = +2

Query: 29  LCASSAAGDLSYAAYIFRQLQFPTTNDWNAIIRGLAKTPQPSDAITWFVAMS-RASCKPD 205
           L A +  GDL  A  +F ++  P    WNA+I G A+  +P+DAI  F  M    + +P+
Sbjct: 145 LDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPN 204

Query: 206 ALTCSFALKACARALARFEATEIQSQVVRYGFVNDLLLQTTLVDVYAKSGDLE 364
           A+T   AL AC++  A  E   +   +V     +++ +   ++D+YAK G ++
Sbjct: 205 AVTVQGALLACSQLGALKEGESVHKYIVEEKLNSNVQVCNVVIDMYAKCGSMD 257


>ref|XP_002306730.1| predicted protein [Populus trichocarpa] gi|222856179|gb|EEE93726.1|
           predicted protein [Populus trichocarpa]
          Length = 578

 Score =  130 bits (327), Expect = 1e-28
 Identities = 65/117 (55%), Positives = 86/117 (73%)
 Frame = +2

Query: 14  SKLLDLCASSAAGDLSYAAYIFRQLQFPTTNDWNAIIRGLAKTPQPSDAITWFVAMSRAS 193
           SKLL+L A S  G+LS+A   F Q++ P+TNDWNAIIRG  ++P P++A  W+ +M   S
Sbjct: 42  SKLLELYALSL-GNLSFAILTFSQIRTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISKS 100

Query: 194 CKPDALTCSFALKACARALARFEATEIQSQVVRYGFVNDLLLQTTLVDVYAKSGDLE 364
            K DALTCSF LKACAR LAR E+ +I + +VR GF+ D LL TTL+DVYAK G+++
Sbjct: 101 RKVDALTCSFVLKACARVLARLESIQIHTHIVRKGFIADALLGTTLLDVYAKVGEID 157


>ref|XP_002527112.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223533535|gb|EEF35275.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 364

 Score =  127 bits (318), Expect = 1e-27
 Identities = 65/117 (55%), Positives = 83/117 (70%)
 Frame = +2

Query: 14  SKLLDLCASSAAGDLSYAAYIFRQLQFPTTNDWNAIIRGLAKTPQPSDAITWFVAMSRAS 193
           SKLL+  A S   +LS A   F Q+  P+TNDWNA++RGL ++P P D+  W+  M R S
Sbjct: 40  SKLLEFFALSL-NNLSVAIKAFYQILTPSTNDWNAVLRGLIQSPDPIDSFKWYKTMIRGS 98

Query: 194 CKPDALTCSFALKACARALARFEATEIQSQVVRYGFVNDLLLQTTLVDVYAKSGDLE 364
            K DALTCSF LKACAR LA  E+T++ S +VR GFV D LL TTL+D+YAK+GDL+
Sbjct: 99  YKVDALTCSFVLKACARVLAFSESTQLHSHIVRKGFVADALLGTTLLDLYAKTGDLD 155



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 36/112 (32%), Positives = 56/112 (50%)
 Frame = +2

Query: 20  LLDLCASSAAGDLSYAAYIFRQLQFPTTNDWNAIIRGLAKTPQPSDAITWFVAMSRASCK 199
           LLDL A +  GDL  A  +F ++       WNA+I G A+  +PS+A+  F  M     K
Sbjct: 144 LLDLYAKT--GDLDSAQKMFDEMIVKDIASWNALISGFAQGNKPSEALGLFKRMEVLGFK 201

Query: 200 PDALTCSFALKACARALARFEATEIQSQVVRYGFVNDLLLQTTLVDVYAKSG 355
           P+ +T   AL AC++  A  E  +I   +       ++ +    +D+YAK G
Sbjct: 202 PNEITVLGALSACSQLGAFKEGEKIHEYIRSQKLDMNVQVCNAAIDMYAKCG 253


>ref|XP_002891080.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297336922|gb|EFH67339.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 562

 Score =  124 bits (311), Expect = 8e-27
 Identities = 66/121 (54%), Positives = 80/121 (66%), Gaps = 5/121 (4%)
 Frame = +2

Query: 14  SKLLDLCASSAAGDLSYAAYIFRQLQFPTTNDWNAIIRGLAKTPQPSDAITWFVAM---- 181
           S+LL+ CA S  GDLS+A  IFR +  P TNDWNAIIRG A +  PS A +W+ +M    
Sbjct: 39  SRLLERCAISPFGDLSFAVKIFRHIPKPLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQRS 98

Query: 182 -SRASCKPDALTCSFALKACARALARFEATEIQSQVVRYGFVNDLLLQTTLVDVYAKSGD 358
            S A C+ DALTCSF LKACARAL      +I  Q+ R GF  D LL TTL+D Y+K+GD
Sbjct: 99  SSSALCRVDALTCSFTLKACARALCSSAMVQIHCQISRRGFSADALLCTTLLDAYSKNGD 158

Query: 359 L 361
           L
Sbjct: 159 L 159