BLASTX nr result

ID: Bupleurum21_contig00008097 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00008097
         (1053 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002510317.1| F-box and wd40 domain protein, putative [Ric...   160   6e-37
ref|NP_180217.1| WD40 domain-containing protein [Arabidopsis tha...   142   1e-31
ref|XP_004147819.1| PREDICTED: vegetative incompatibility protei...   140   5e-31
ref|XP_002302452.1| predicted protein [Populus trichocarpa] gi|2...   139   2e-30
ref|XP_002301210.1| predicted protein [Populus trichocarpa] gi|2...   136   8e-30

>ref|XP_002510317.1| F-box and wd40 domain protein, putative [Ricinus communis]
           gi|223551018|gb|EEF52504.1| F-box and wd40 domain
           protein, putative [Ricinus communis]
          Length = 470

 Score =  160 bits (404), Expect = 6e-37
 Identities = 87/148 (58%), Positives = 102/148 (68%), Gaps = 8/148 (5%)
 Frame = +3

Query: 30  DDPGSTSAMF---GAAASMPSKVGNMLHSEPNXXXXXXXXXXXXXXYNKRNSSFSA---- 188
           DD G+    F   G+     SK GN++HS+PN              ++ RNSS SA    
Sbjct: 3   DDGGADCTKFVDTGSNTIPRSKFGNIMHSDPNMSSTVNDED-----FSIRNSSASAVTPG 57

Query: 189 -YDPSRLSCEGSPMMMSPWNNTSPFAKSPWSNFDETDMKGGSVPQSGLIGSLVREEGHIY 365
            +DP+RLSCEGSPM MSPWNNTSPF KSPW+NF+E      ++PQ+GLIGSLVREEGHIY
Sbjct: 58  FFDPNRLSCEGSPMTMSPWNNTSPFTKSPWANFEE------NIPQNGLIGSLVREEGHIY 111

Query: 366 SLAATNGLLYTGSDSKNIRVWKDLKEFS 449
           SLAA   LLYTGSDSKNIRVWK+LKEFS
Sbjct: 112 SLAAKKDLLYTGSDSKNIRVWKNLKEFS 139


>ref|NP_180217.1| WD40 domain-containing protein [Arabidopsis thaliana]
           gi|2739374|gb|AAC14498.1| En/Spm-like transposon protein
           [Arabidopsis thaliana] gi|50253512|gb|AAT71958.1|
           At2g26490 [Arabidopsis thaliana]
           gi|53850519|gb|AAU95436.1| At2g26490 [Arabidopsis
           thaliana] gi|330252750|gb|AEC07844.1| WD40
           domain-containing protein [Arabidopsis thaliana]
          Length = 465

 Score =  142 bits (359), Expect = 1e-31
 Identities = 81/138 (58%), Positives = 94/138 (68%), Gaps = 6/138 (4%)
 Frame = +3

Query: 54  MFGAAASMP-SKVGNMLHSEPNXXXXXXXXXXXXXXYNKRNSSFSA-----YDPSRLSCE 215
           MF  A S+P +K  NM+HS+PN              Y  RNSS SA     YD  R+SCE
Sbjct: 1   MFTEADSIPRAKYANMMHSDPNLSSTMTQQTEEE--YGIRNSSASAVGTGMYD--RMSCE 56

Query: 216 GSPMMMSPWNNTSPFAKSPWSNFDETDMKGGSVPQSGLIGSLVREEGHIYSLAATNGLLY 395
           GSPMMMSPWN  +PF ++ WS  +E      ++PQ+GLIGSLVREEGHIYSLAAT  LLY
Sbjct: 57  GSPMMMSPWNQATPFTQTQWSTVEE------NLPQNGLIGSLVREEGHIYSLAATKDLLY 110

Query: 396 TGSDSKNIRVWKDLKEFS 449
           TGSDSKNIRVWK+LKEFS
Sbjct: 111 TGSDSKNIRVWKNLKEFS 128


>ref|XP_004147819.1| PREDICTED: vegetative incompatibility protein HET-E-1-like [Cucumis
           sativus] gi|449524816|ref|XP_004169417.1| PREDICTED:
           vegetative incompatibility protein HET-E-1-like [Cucumis
           sativus]
          Length = 462

 Score =  140 bits (353), Expect = 5e-31
 Identities = 81/139 (58%), Positives = 91/139 (65%), Gaps = 7/139 (5%)
 Frame = +3

Query: 54  MFGAAASMPSKV--GNMLHSEPNXXXXXXXXXXXXXXYNKRNSSFSA-----YDPSRLSC 212
           MFG   S+P     GNM HS+PN              +  RNSS S      YD SR+S 
Sbjct: 1   MFGEGNSIPRAKYGGNMAHSDPNISSTLTEED-----FAMRNSSASVGGQAFYDQSRMSG 55

Query: 213 EGSPMMMSPWNNTSPFAKSPWSNFDETDMKGGSVPQSGLIGSLVREEGHIYSLAATNGLL 392
           EGSPM MSPWN TS FAKSPWS  +E      S PQ+GLIGSLVREEGHIYSLAA+  LL
Sbjct: 56  EGSPMTMSPWNQTSMFAKSPWSQVEEN-----SGPQNGLIGSLVREEGHIYSLAASGELL 110

Query: 393 YTGSDSKNIRVWKDLKEFS 449
           YTGSDSKNIRVWK+LKE++
Sbjct: 111 YTGSDSKNIRVWKNLKEYA 129


>ref|XP_002302452.1| predicted protein [Populus trichocarpa] gi|222844178|gb|EEE81725.1|
           predicted protein [Populus trichocarpa]
          Length = 413

 Score =  139 bits (349), Expect = 2e-30
 Identities = 76/128 (59%), Positives = 89/128 (69%), Gaps = 5/128 (3%)
 Frame = +3

Query: 81  SKVGNMLHSEPNXXXXXXXXXXXXXXYNKRNSSFS-----AYDPSRLSCEGSPMMMSPWN 245
           SK GNM+HS+PN              +  RNSS S     ++DP+R+SCEGSPM MSPWN
Sbjct: 3   SKFGNMMHSDPNLSATAAAIPRDEV-FGYRNSSASLTGPASFDPNRMSCEGSPMTMSPWN 61

Query: 246 NTSPFAKSPWSNFDETDMKGGSVPQSGLIGSLVREEGHIYSLAATNGLLYTGSDSKNIRV 425
            T   +  PWS F+E      ++PQ+GLIGSLVREEGHIYSLAAT  LLYTGSDSKNIRV
Sbjct: 62  QTGGGSNFPWS-FEE------NLPQNGLIGSLVREEGHIYSLAATKDLLYTGSDSKNIRV 114

Query: 426 WKDLKEFS 449
           WK+LKEFS
Sbjct: 115 WKNLKEFS 122


>ref|XP_002301210.1| predicted protein [Populus trichocarpa] gi|222842936|gb|EEE80483.1|
            predicted protein [Populus trichocarpa]
          Length = 725

 Score =  136 bits (343), Expect = 8e-30
 Identities = 80/190 (42%), Positives = 103/190 (54%)
 Frame = -3

Query: 1048 DILFEDQNMETLRYLAPEHFYDGKITEKADIYAFGLVLLELITGQRSVELQCXXXXXXXX 869
            +I  E +   T  YLAPE+   GK T   D++AFG+VLLEL+TGQR  +LQ         
Sbjct: 556  NISSEGRVNRTSGYLAPEYINSGKTTPTVDVFAFGVVLLELMTGQRISKLQ--------- 606

Query: 868  XXXXXXXXXXXXXXXXXXXXXXXXXXXSSEAIHLLTNVHQMLDPSLLSQHNSNLPNEVQA 689
                                       + E  H L N++Q+LDP L S+       ++QA
Sbjct: 607  -----------FYKGQDFLSDLIHPVSALEPCHALENIYQLLDPCLASEQLPVFAYQLQA 655

Query: 688  MCQAAFQCLRQDPESRPPMSKVLRVLEGGDAVMPVGLDLQSIGSSSAHLRSVISKTQAES 509
            +  A   CLRQDPE+RPPMSKVLR+LEGGD  +P+ LDL S+G+ S  L  V   TQ + 
Sbjct: 656  VGLATSLCLRQDPETRPPMSKVLRILEGGDLAVPLSLDLNSVGNRSGRLHGVSLNTQPDG 715

Query: 508  RRVHSRKLSH 479
            RR HSRKLSH
Sbjct: 716  RRGHSRKLSH 725


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