BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00008059
         (978 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAD44436.1| putative ribosome recycling factor [Arabidopsis ...   268   1e-69
ref|NP_186829.3| ribosome recycling factor [Arabidopsis thaliana...   268   1e-69
ref|XP_002509550.1| ribosome recycling factor, putative [Ricinus...   257   3e-66
ref|XP_002298606.1| predicted protein [Populus trichocarpa] gi|2...   255   1e-65
ref|XP_002263449.1| PREDICTED: ribosome-recycling factor [Vitis ...   251   2e-64

>dbj|BAD44436.1| putative ribosome recycling factor [Arabidopsis thaliana]
          Length = 267

 Score =  268 bits (685), Expect = 1e-69
 Identities = 142/219 (64%), Positives = 171/219 (78%)
 Frame = +2

Query: 5   RGFAKRRNTQTYDNDSDEEDGGTSGTADIGVTVKSAALSQMEAALEALSRDLAKLRTGRA 184
           RGFAK + ++      D   G      DIG TVK+AA SQMEAA++ALSRDL KLRTGRA
Sbjct: 62  RGFAKGKKSK-----DDSGTGMVDAAPDIGPTVKAAASSQMEAAIDALSRDLTKLRTGRA 116

Query: 185 SVGMLDHIVVLTSGMKIPLNGMAAVSVLDPKTLSITPYDPNTIKELEKAIVASPLVSNPK 364
           + GMLDHIVV T G+K+PLN +A VSVLDPKTLS+ PYDP+T+KELEKAIVASPL  NPK
Sbjct: 117 APGMLDHIVVETGGVKMPLNHLALVSVLDPKTLSVNPYDPDTVKELEKAIVASPLGLNPK 176

Query: 365 VEGERLIAAIPPLTKEHIQSVCKLVTKSSEDVKQSIRRARQKALDTIXXXXXXXXXXXXX 544
           ++G+RL+A+IP LTKEHIQ++CK+VTKSSE VKQSIRRARQKALDTI             
Sbjct: 177 LDGQRLVASIPALTKEHIQAMCKIVTKSSEVVKQSIRRARQKALDTI----------KKA 226

Query: 545 GLSISADDAKKLEKEVDEMTKKYIKLAEDMCKAKEKEVT 661
           G S+  D+ K+LEKEVDE+TKK++K AEDMCK+KEKE+T
Sbjct: 227 GSSLPKDEVKRLEKEVDELTKKFVKSAEDMCKSKEKEIT 265


>ref|NP_186829.3| ribosome recycling factor [Arabidopsis thaliana]
           gi|34146850|gb|AAQ62433.1| At3g01800 [Arabidopsis
           thaliana] gi|51970776|dbj|BAD44080.1| putative ribosome
           recycling factor [Arabidopsis thaliana]
           gi|62319213|dbj|BAD94407.1| putative ribosome recycling
           factor [Arabidopsis thaliana]
           gi|332640195|gb|AEE73716.1| ribosome recycling factor
           [Arabidopsis thaliana]
          Length = 267

 Score =  268 bits (685), Expect = 1e-69
 Identities = 142/219 (64%), Positives = 171/219 (78%)
 Frame = +2

Query: 5   RGFAKRRNTQTYDNDSDEEDGGTSGTADIGVTVKSAALSQMEAALEALSRDLAKLRTGRA 184
           RGFAK + ++      D   G      DIG TVK+AA SQMEAA++ALSRDL KLRTGRA
Sbjct: 62  RGFAKGKKSK-----DDSGTGMVDAAPDIGPTVKAAASSQMEAAIDALSRDLTKLRTGRA 116

Query: 185 SVGMLDHIVVLTSGMKIPLNGMAAVSVLDPKTLSITPYDPNTIKELEKAIVASPLVSNPK 364
           + GMLDHIVV T G+K+PLN +A VSVLDPKTLS+ PYDP+T+KELEKAIVASPL  NPK
Sbjct: 117 APGMLDHIVVETGGVKMPLNHLALVSVLDPKTLSVNPYDPDTVKELEKAIVASPLGLNPK 176

Query: 365 VEGERLIAAIPPLTKEHIQSVCKLVTKSSEDVKQSIRRARQKALDTIXXXXXXXXXXXXX 544
           ++G+RL+A+IP LTKEHIQ++CK+VTKSSE VKQSIRRARQKALDTI             
Sbjct: 177 LDGQRLVASIPALTKEHIQAMCKIVTKSSEVVKQSIRRARQKALDTI----------KKA 226

Query: 545 GLSISADDAKKLEKEVDEMTKKYIKLAEDMCKAKEKEVT 661
           G S+  D+ K+LEKEVDE+TKK++K AEDMCK+KEKE+T
Sbjct: 227 GSSLPKDEVKRLEKEVDELTKKFVKSAEDMCKSKEKEIT 265


>ref|XP_002509550.1| ribosome recycling factor, putative [Ricinus communis]
           gi|223549449|gb|EEF50937.1| ribosome recycling factor,
           putative [Ricinus communis]
          Length = 262

 Score =  257 bits (657), Expect = 3e-66
 Identities = 135/220 (61%), Positives = 169/220 (76%), Gaps = 1/220 (0%)
 Frame = +2

Query: 5   RGFAKRRNTQTYDNDSDEEDGGT-SGTADIGVTVKSAALSQMEAALEALSRDLAKLRTGR 181
           RGFAK + ++      D+  GGT   T DIG  VK +A  QMEAA+ +LSR+L KLRTGR
Sbjct: 57  RGFAKGKKSK------DDSGGGTVQVTPDIGPAVKESAALQMEAAIVSLSRELTKLRTGR 110

Query: 182 ASVGMLDHIVVLTSGMKIPLNGMAAVSVLDPKTLSITPYDPNTIKELEKAIVASPLVSNP 361
           AS GMLDHI+V T G+K+PLN +A V+V+DPKTLS+ PYDPN +  LEKAIV+SPL  NP
Sbjct: 111 ASAGMLDHIIVETDGVKMPLNRLAVVAVMDPKTLSVNPYDPNMVSALEKAIVSSPLGLNP 170

Query: 362 KVEGERLIAAIPPLTKEHIQSVCKLVTKSSEDVKQSIRRARQKALDTIXXXXXXXXXXXX 541
           +V+GERLIA+IPPLTKEH+Q++CK+V KS E+VKQS+RRARQKALDTI            
Sbjct: 171 RVDGERLIASIPPLTKEHMQAMCKVVGKSCEEVKQSVRRARQKALDTI----------KK 220

Query: 542 XGLSISADDAKKLEKEVDEMTKKYIKLAEDMCKAKEKEVT 661
            G ++S DD K+LEKEVDE+TKK++K AED+CKAKEKE+T
Sbjct: 221 AGSNLSKDDVKRLEKEVDELTKKFVKSAEDICKAKEKEIT 260


>ref|XP_002298606.1| predicted protein [Populus trichocarpa] gi|222845864|gb|EEE83411.1|
           predicted protein [Populus trichocarpa]
          Length = 273

 Score =  255 bits (652), Expect = 1e-65
 Identities = 135/220 (61%), Positives = 162/220 (73%)
 Frame = +2

Query: 5   RGFAKRRNTQTYDNDSDEEDGGTSGTADIGVTVKSAALSQMEAALEALSRDLAKLRTGRA 184
           RGFAK +N        D+  GGT    DIG TVK  A SQM+AA+ ALSR+L KLRTGRA
Sbjct: 68  RGFAKGKN-----KSKDDSAGGTVEFVDIGPTVKETANSQMDAAVVALSRELQKLRTGRA 122

Query: 185 SVGMLDHIVVLTSGMKIPLNGMAAVSVLDPKTLSITPYDPNTIKELEKAIVASPLVSNPK 364
           S GMLDHI+V T G+K+PLN  A VSV+D KTLS+ PYDPNT+K+LE AIV+SPL  NP+
Sbjct: 123 SAGMLDHIIVETDGVKLPLNRSAVVSVMDAKTLSVNPYDPNTLKQLENAIVSSPLGLNPQ 182

Query: 365 VEGERLIAAIPPLTKEHIQSVCKLVTKSSEDVKQSIRRARQKALDTIXXXXXXXXXXXXX 544
            +G+RLIAAIPPLTKEH Q++CK+V KS ED +QSIRRARQKA+DT+             
Sbjct: 183 RDGDRLIAAIPPLTKEHTQAMCKVVAKSCEDCRQSIRRARQKAMDTV----------KKA 232

Query: 545 GLSISADDAKKLEKEVDEMTKKYIKLAEDMCKAKEKEVTT 664
           G S   DDAKKLEKE++EMTKK++K AEDMC  KEKE+ T
Sbjct: 233 GSSFPKDDAKKLEKEIEEMTKKFVKSAEDMCNNKEKEIKT 272


>ref|XP_002263449.1| PREDICTED: ribosome-recycling factor [Vitis vinifera]
           gi|296090242|emb|CBI40061.3| unnamed protein product
           [Vitis vinifera]
          Length = 258

 Score =  251 bits (641), Expect = 2e-64
 Identities = 137/219 (62%), Positives = 165/219 (75%), Gaps = 1/219 (0%)
 Frame = +2

Query: 5   RGFAKRRNTQTYDNDSDEEDGGTSGTA-DIGVTVKSAALSQMEAALEALSRDLAKLRTGR 181
           RGFAK R ++      D + G T     DIG  VK  A+SQM+AA+ ALSR+L+KLRTGR
Sbjct: 53  RGFAKGRKSK------DSDAGNTVEVVPDIGPAVKENAMSQMDAAVVALSRELSKLRTGR 106

Query: 182 ASVGMLDHIVVLTSGMKIPLNGMAAVSVLDPKTLSITPYDPNTIKELEKAIVASPLVSNP 361
           AS GMLDHI+V T G+K+PL+ +A VSVLDPKTLS+TPYD + +K+LE AIV+SPL  NP
Sbjct: 107 ASAGMLDHIIVETGGVKMPLSRLAVVSVLDPKTLSVTPYDLDALKQLENAIVSSPLGLNP 166

Query: 362 KVEGERLIAAIPPLTKEHIQSVCKLVTKSSEDVKQSIRRARQKALDTIXXXXXXXXXXXX 541
           K +GERLIA IPPLTKEHIQ++CK+V KS EDVKQSIRRARQKALD I            
Sbjct: 167 KADGERLIAVIPPLTKEHIQAMCKVVAKSCEDVKQSIRRARQKALDMI----------KK 216

Query: 542 XGLSISADDAKKLEKEVDEMTKKYIKLAEDMCKAKEKEV 658
            G S+  D AK+LEKEVDE+TKK++K AEDMCKAKEKE+
Sbjct: 217 AGSSLPKDVAKRLEKEVDELTKKFVKSAEDMCKAKEKEI 255