BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00007941
         (1084 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|D9J034.1|WHY2_SOLTU RecName: Full=Single-stranded DNA-bindig ...   282   9e-74
gb|ABK94132.1| unknown [Populus trichocarpa]                          273   7e-71
ref|XP_002888827.1| ATWHY2 [Arabidopsis lyrata subsp. lyrata] gi...   267   4e-69
ref|XP_002303313.1| predicted protein [Populus trichocarpa] gi|2...   266   9e-69
pdb|3N1H|A Chain A, Crystal Structure Of Stwhy2 gi|302566180|pdb...   264   3e-68

>sp|D9J034.1|WHY2_SOLTU RecName: Full=Single-stranded DNA-bindig protein WHY2,
           mitochondrial; AltName: Full=Protein WHIRLY 2;
           Short=StWHY2; Flags: Precursor
           gi|298359665|gb|ADI77438.1| Why2 protein [Solanum
           tuberosum]
          Length = 238

 Score =  282 bits (722), Expect = 9e-74
 Identities = 140/215 (65%), Positives = 172/215 (80%), Gaps = 1/215 (0%)
 Frame = +2

Query: 152 VANSIREQSFMSKACISTASQSSSTD-GKILDRVFANYNIYKGKAALSASPRLPQFSKLD 328
           V  SI + +  + A  ST  Q+   D GK   RVFA Y+++KGKAALSA PRLP F++LD
Sbjct: 24  VKGSIWQHAINTFAGFSTVRQNVVADAGKREGRVFAPYSVFKGKAALSAEPRLPTFNRLD 83

Query: 329 SGSLKIDRQGTIMLSFSPAIGERKYDWEKKQLFALSPTEIGSLISLGPEEGCEFFHDPSM 508
           SG +K++R+G IML+F P++GERKYDWEK+QLFALS TE+GSLIS+G  +  EFFHDPSM
Sbjct: 84  SGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSLISMGTRDSSEFFHDPSM 143

Query: 509 KSSNAGQVRKTLQVKPHADGSGYFISLSVVNNILKTNERFTVPVTKAEFAVMRTAFSFAL 688
            SSNAGQVRK+L +KP+ADGSGYFISLSVVNN LKTN+RFTVPVT AEFAVMRTAFSFAL
Sbjct: 144 LSSNAGQVRKSLSIKPNADGSGYFISLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFSFAL 203

Query: 689 PHIMGWDRYTNQPPQNSEENTPMVDPRVKSLEWDR 793
           PHIMGWDR+TN+P ++  ++   V P++   EWDR
Sbjct: 204 PHIMGWDRFTNRPSESISQSPSKVVPQLMEAEWDR 238


>gb|ABK94132.1| unknown [Populus trichocarpa]
          Length = 229

 Score =  273 bits (697), Expect = 7e-71
 Identities = 135/199 (67%), Positives = 157/199 (78%), Gaps = 2/199 (1%)
 Frame = +2

Query: 203 TASQSSSTDGK--ILDRVFANYNIYKGKAALSASPRLPQFSKLDSGSLKIDRQGTIMLSF 376
           T   S ST GK  I DRVFA Y+++KGKAALS  P LP FSK  SG+L++DR+G++ML+F
Sbjct: 31  TFQASISTGGKSSIQDRVFAPYSVFKGKAALSVEPVLPTFSKFGSGNLRVDRRGSMMLTF 90

Query: 377 SPAIGERKYDWEKKQLFALSPTEIGSLISLGPEEGCEFFHDPSMKSSNAGQVRKTLQVKP 556
            PAIGERKYD+EK+Q FALS TE+GSLIS GP++ CEFFHDPSM SSNAGQVRK L +KP
Sbjct: 91  LPAIGERKYDYEKRQKFALSATEVGSLISTGPKDSCEFFHDPSMLSSNAGQVRKNLSIKP 150

Query: 557 HADGSGYFISLSVVNNILKTNERFTVPVTKAEFAVMRTAFSFALPHIMGWDRYTNQPPQN 736
           HADGSGYF+SLSVVNNILKT ERFTVPVT AEF V++TA SFALPHIMGWDR T   P  
Sbjct: 151 HADGSGYFVSLSVVNNILKTTERFTVPVTTAEFTVLKTACSFALPHIMGWDRLTTPLPGT 210

Query: 737 SEENTPMVDPRVKSLEWDR 793
                  VDP++  LEWD+
Sbjct: 211 LASKLSKVDPQMPDLEWDK 229


>ref|XP_002888827.1| ATWHY2 [Arabidopsis lyrata subsp. lyrata]
           gi|297334668|gb|EFH65086.1| ATWHY2 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 242

 Score =  267 bits (682), Expect = 4e-69
 Identities = 145/249 (58%), Positives = 182/249 (73%), Gaps = 16/249 (6%)
 Frame = +2

Query: 95  ILKRAQPFLQRIGRNAWCNVANSIREQSFMSKACISTAS-QSSSTDG---------KILD 244
           ++K+A+  L R    + C+ + S+ E+   +      AS  SSST G         K   
Sbjct: 1   MMKQARTLLSR----SLCDHSKSLFEERVKASTLRGFASWSSSSTPGRGFSGKDAPKPSG 56

Query: 245 RVFANYNIYKGKAALSASPRLPQFSKLDSGSLKIDRQGTIMLSFSPAIGERKYDWEKKQL 424
           R+FA Y+I+KGKAALS  P LP F+++DSG+L+IDR+G++M++F PAIGERKYDWEKKQ 
Sbjct: 57  RLFAPYSIFKGKAALSVEPVLPSFTEIDSGNLRIDRRGSLMMTFMPAIGERKYDWEKKQK 116

Query: 425 FALSPTEIGSLISLGPEEGCEFFHDPSMKSSNAGQVRKTLQVKPHADGSGYFISLSVVNN 604
           FALSPTE+GSLIS+G ++  EFFHDPSMKSSNAGQVRK+L +KPHADGSGYFISLSV N 
Sbjct: 117 FALSPTEVGSLISMGSKDSSEFFHDPSMKSSNAGQVRKSLSIKPHADGSGYFISLSVNNG 176

Query: 605 ILKTNERFTVPVTKAEFAVMRTAFSFALPHIMGWDRYTNQ------PPQNSEENTPMVDP 766
           ILKTN+ F VPVTKAEFAVM+TAFSFALPHIMGW+R T Q      PP+N        DP
Sbjct: 177 ILKTNDYFVVPVTKAEFAVMKTAFSFALPHIMGWNRLTGQGNTEALPPRNVTH--LKTDP 234

Query: 767 RVKSLEWDR 793
           +++ LEWD+
Sbjct: 235 QLE-LEWDK 242


>ref|XP_002303313.1| predicted protein [Populus trichocarpa] gi|222840745|gb|EEE78292.1|
           predicted protein [Populus trichocarpa]
          Length = 183

 Score =  266 bits (679), Expect = 9e-69
 Identities = 127/183 (69%), Positives = 149/183 (81%)
 Frame = +2

Query: 245 RVFANYNIYKGKAALSASPRLPQFSKLDSGSLKIDRQGTIMLSFSPAIGERKYDWEKKQL 424
           RVFA Y+++KGKAALS  P LP FSK  SG+L++DR+G++ML+F PAIGERKYD+EK+Q 
Sbjct: 1   RVFAPYSVFKGKAALSVEPVLPTFSKFGSGNLRVDRRGSMMLTFLPAIGERKYDYEKRQK 60

Query: 425 FALSPTEIGSLISLGPEEGCEFFHDPSMKSSNAGQVRKTLQVKPHADGSGYFISLSVVNN 604
           FALS TE+GSLIS GP++ CEFFHDPSM SSNAGQVRK L +KPHADGSGYF+SLSVVNN
Sbjct: 61  FALSATEVGSLISTGPKDSCEFFHDPSMLSSNAGQVRKNLSIKPHADGSGYFVSLSVVNN 120

Query: 605 ILKTNERFTVPVTKAEFAVMRTAFSFALPHIMGWDRYTNQPPQNSEENTPMVDPRVKSLE 784
           ILKT ERFTVPVT AEF V++TA SFALPHIMGWDR T   P         VDP++  LE
Sbjct: 121 ILKTTERFTVPVTTAEFTVLKTACSFALPHIMGWDRLTTPLPGTLASKLSKVDPQMPDLE 180

Query: 785 WDR 793
           WD+
Sbjct: 181 WDK 183


>pdb|3N1H|A Chain A, Crystal Structure Of Stwhy2 gi|302566180|pdb|3N1I|A Chain
           A, Crystal Structure Of A Stwhy2-Ere32 Complex
           gi|302566182|pdb|3N1J|A Chain A, Crystal Structure Of A
           Stwhy2-Dt32 Complex gi|302566184|pdb|3N1K|A Chain A,
           Crystal Structure Of A Stwhy2-Cere32 Complex
           gi|302566186|pdb|3N1L|A Chain A, Crystal Structure Of A
           Stwhy2-Rcere32 Complex
          Length = 178

 Score =  264 bits (675), Expect = 3e-68
 Identities = 126/166 (75%), Positives = 148/166 (89%)
 Frame = +2

Query: 230 GKILDRVFANYNIYKGKAALSASPRLPQFSKLDSGSLKIDRQGTIMLSFSPAIGERKYDW 409
           GK   RVFA Y+++KGKAALSA PRLP F++LDSG +K++R+G IML+F P++GERKYDW
Sbjct: 5   GKREGRVFAPYSVFKGKAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDW 64

Query: 410 EKKQLFALSPTEIGSLISLGPEEGCEFFHDPSMKSSNAGQVRKTLQVKPHADGSGYFISL 589
           EK+QLFALS TE+GSLIS+G  +  EFFHDPSM SSNAGQVRK+L +KP+ADGSGYFISL
Sbjct: 65  EKRQLFALSATEVGSLISMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISL 124

Query: 590 SVVNNILKTNERFTVPVTKAEFAVMRTAFSFALPHIMGWDRYTNQP 727
           SVVNN LKTN+RFTVPVT AEFAVMRTAFSFALPHIMGWDR+TN+P
Sbjct: 125 SVVNNNLKTNDRFTVPVTTAEFAVMRTAFSFALPHIMGWDRFTNRP 170