BLASTX nr result
ID: Bupleurum21_contig00007714
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00007714
(1056 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003631455.1| PREDICTED: pentatricopeptide repeat-containi... 365 1e-98
emb|CBI25851.3| unnamed protein product [Vitis vinifera] 365 1e-98
emb|CAN68810.1| hypothetical protein VITISV_001082 [Vitis vinifera] 363 4e-98
ref|XP_002531466.1| pentatricopeptide repeat-containing protein,... 335 9e-90
ref|XP_002326464.1| predicted protein [Populus trichocarpa] gi|2... 304 2e-80
>ref|XP_003631455.1| PREDICTED: pentatricopeptide repeat-containing protein At5g47360-like
[Vitis vinifera]
Length = 638
Score = 365 bits (937), Expect = 1e-98
Identities = 180/291 (61%), Positives = 229/291 (78%)
Frame = +2
Query: 182 RFLTSSIRYTNPIFAFTKSQSFSSSADHYWTQLQKNGSNIETTLSKIRIQLDTACVIQVL 361
R L SIR+ NP F+ + SSA+ Y+T LQK G NIE TL +R +LD++CV +VL
Sbjct: 8 RLLPYSIRHKNPNFS-----TALSSAEKYYTHLQKYGDNIEKTLPAVRAKLDSSCVNEVL 62
Query: 362 QRCADDRPVLGLRFFIWAALQPNYRHSSYMYNKACSLFKIRRNPGVITNVMEDFWSEGCL 541
RC+ + LGLRFFIWA +Q YRHSSY+Y+KAC LF+I +NP I +V+E + EG +
Sbjct: 63 NRCSLTQSQLGLRFFIWAGVQSYYRHSSYLYSKACELFRINQNPRAIIDVIEAYRVEGTV 122
Query: 542 VSVKTYNVVLNLCKQAKLANEGLWLLRKMKEFNCQPDTLAYNVVIRLFCEKGDMDVADRL 721
VSVKT+NVVL+L ++AKLA+E LW+L+KM EFN + DT+AYN VIRLFCEKGDMD+A L
Sbjct: 123 VSVKTFNVVLHLLREAKLADEALWILKKMAEFNIRADTVAYNSVIRLFCEKGDMDLAAGL 182
Query: 722 MKEMSVVGLYPDMITYVLMTKGFVDAGRLEGACQLFQVMRGHGCLPNKVMYSALLDGVCR 901
MKEM ++ LYP+MITYV M KGF + GRLE AC+LF+VM+GHGC PN V+Y+ +LDGVCR
Sbjct: 183 MKEMGLIDLYPNMITYVTMIKGFCNVGRLEDACKLFKVMKGHGCSPNVVVYTVILDGVCR 242
Query: 902 FGSLDKALQLLGEMEKEGGEYKPNVITYTSVIQSFCEKGKSVEAMCILDRM 1054
FGSL++AL+LLGEMEKE G+ PNV+TYTS+IQS CEKGK +EA+ ILDRM
Sbjct: 243 FGSLERALELLGEMEKESGDCSPNVVTYTSMIQSCCEKGKLMEALEILDRM 293
>emb|CBI25851.3| unnamed protein product [Vitis vinifera]
Length = 528
Score = 365 bits (937), Expect = 1e-98
Identities = 180/291 (61%), Positives = 229/291 (78%)
Frame = +2
Query: 182 RFLTSSIRYTNPIFAFTKSQSFSSSADHYWTQLQKNGSNIETTLSKIRIQLDTACVIQVL 361
R L SIR+ NP F+ + SSA+ Y+T LQK G NIE TL +R +LD++CV +VL
Sbjct: 14 RLLPYSIRHKNPNFS-----TALSSAEKYYTHLQKYGDNIEKTLPAVRAKLDSSCVNEVL 68
Query: 362 QRCADDRPVLGLRFFIWAALQPNYRHSSYMYNKACSLFKIRRNPGVITNVMEDFWSEGCL 541
RC+ + LGLRFFIWA +Q YRHSSY+Y+KAC LF+I +NP I +V+E + EG +
Sbjct: 69 NRCSLTQSQLGLRFFIWAGVQSYYRHSSYLYSKACELFRINQNPRAIIDVIEAYRVEGTV 128
Query: 542 VSVKTYNVVLNLCKQAKLANEGLWLLRKMKEFNCQPDTLAYNVVIRLFCEKGDMDVADRL 721
VSVKT+NVVL+L ++AKLA+E LW+L+KM EFN + DT+AYN VIRLFCEKGDMD+A L
Sbjct: 129 VSVKTFNVVLHLLREAKLADEALWILKKMAEFNIRADTVAYNSVIRLFCEKGDMDLAAGL 188
Query: 722 MKEMSVVGLYPDMITYVLMTKGFVDAGRLEGACQLFQVMRGHGCLPNKVMYSALLDGVCR 901
MKEM ++ LYP+MITYV M KGF + GRLE AC+LF+VM+GHGC PN V+Y+ +LDGVCR
Sbjct: 189 MKEMGLIDLYPNMITYVTMIKGFCNVGRLEDACKLFKVMKGHGCSPNVVVYTVILDGVCR 248
Query: 902 FGSLDKALQLLGEMEKEGGEYKPNVITYTSVIQSFCEKGKSVEAMCILDRM 1054
FGSL++AL+LLGEMEKE G+ PNV+TYTS+IQS CEKGK +EA+ ILDRM
Sbjct: 249 FGSLERALELLGEMEKESGDCSPNVVTYTSMIQSCCEKGKLMEALEILDRM 299
>emb|CAN68810.1| hypothetical protein VITISV_001082 [Vitis vinifera]
Length = 577
Score = 363 bits (932), Expect = 4e-98
Identities = 179/291 (61%), Positives = 228/291 (78%)
Frame = +2
Query: 182 RFLTSSIRYTNPIFAFTKSQSFSSSADHYWTQLQKNGSNIETTLSKIRIQLDTACVIQVL 361
R L SIR+ NP F+ + S A+ Y+T LQK G NIE TL +R +LD++CV +VL
Sbjct: 8 RLLPYSIRHKNPNFS-----TALSPAEKYYTHLQKYGDNIEKTLPAVRAKLDSSCVNEVL 62
Query: 362 QRCADDRPVLGLRFFIWAALQPNYRHSSYMYNKACSLFKIRRNPGVITNVMEDFWSEGCL 541
RC+ + LGLRFFIWA +Q YRHSSY+Y+KAC LF+I +NP I +V+E + EG +
Sbjct: 63 NRCSLTQSQLGLRFFIWAGVQSYYRHSSYLYSKACELFRINQNPRAIIDVIEAYRVEGTV 122
Query: 542 VSVKTYNVVLNLCKQAKLANEGLWLLRKMKEFNCQPDTLAYNVVIRLFCEKGDMDVADRL 721
VSVKT+NVVL+L ++AKLA+E LW+L+KM EFN + DT+AYN VIRLFCEKGDMD+A L
Sbjct: 123 VSVKTFNVVLHLLREAKLADEALWILKKMAEFNIRADTVAYNSVIRLFCEKGDMDLAAGL 182
Query: 722 MKEMSVVGLYPDMITYVLMTKGFVDAGRLEGACQLFQVMRGHGCLPNKVMYSALLDGVCR 901
MKEM ++ LYP+MITYV M KGF + GRLE AC+LF+VM+GHGC PN V+Y+ +LDGVCR
Sbjct: 183 MKEMGLIDLYPNMITYVTMIKGFCNVGRLEDACKLFKVMKGHGCSPNVVVYTVILDGVCR 242
Query: 902 FGSLDKALQLLGEMEKEGGEYKPNVITYTSVIQSFCEKGKSVEAMCILDRM 1054
FGSL++AL+LLGEMEKE G+ PNV+TYTS+IQS CEKGK +EA+ ILDRM
Sbjct: 243 FGSLERALELLGEMEKESGDCSPNVVTYTSMIQSCCEKGKLMEALEILDRM 293
Score = 73.9 bits (180), Expect = 6e-11
Identities = 53/206 (25%), Positives = 95/206 (46%), Gaps = 3/206 (1%)
Frame = +2
Query: 428 NYRHSSYMYNKACSLFKIRRNPGVITNVMEDFWSEGCLVSVKTY-NVVLNLCKQAKLANE 604
N R + YN LF + + + +M++ ++ TY ++ C +L +
Sbjct: 155 NIRADTVAYNSVIRLFCEKGDMDLAAGLMKEMGLIDLYPNMITYVTMIKGFCNVGRL-ED 213
Query: 605 GLWLLRKMKEFNCQPDTLAYNVVIRLFCEKGDMDVADRLMKEMSVVG--LYPDMITYVLM 778
L + MK C P+ + Y V++ C G ++ A L+ EM P+++TY M
Sbjct: 214 ACKLFKVMKGHGCSPNVVVYTVILDGVCRFGSLERALELLGEMEKESGDCSPNVVTYTSM 273
Query: 779 TKGFVDAGRLEGACQLFQVMRGHGCLPNKVMYSALLDGVCRFGSLDKALQLLGEMEKEGG 958
+ + G+L A ++ MR GC PN+V S L+ G C G +++A +L+ ++ G
Sbjct: 274 IQSCCEKGKLMEALEILDRMRACGCAPNRVTVSILMKGFCAEGRVEEAFKLIDKVVAGGN 333
Query: 959 EYKPNVITYTSVIQSFCEKGKSVEAM 1036
++Y + Q K SVEA+
Sbjct: 334 ------VSYVGLSQ----KRHSVEAV 349
>ref|XP_002531466.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223528920|gb|EEF30916.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 518
Score = 335 bits (860), Expect = 9e-90
Identities = 161/292 (55%), Positives = 220/292 (75%), Gaps = 1/292 (0%)
Frame = +2
Query: 182 RFLTSSIRYTNPIFAFTKSQSFSSS-ADHYWTQLQKNGSNIETTLSKIRIQLDTACVIQV 358
RFL+ SI P + + F++S AD +T LQ N +N+E +L+ I+ +LDT CV +V
Sbjct: 8 RFLSLSIA---PKTSKISTLHFTTSLADKLYTHLQNNPNNVEKSLNSIKPKLDTRCVTEV 64
Query: 359 LQRCADDRPVLGLRFFIWAALQPNYRHSSYMYNKACSLFKIRRNPGVITNVMEDFWSEGC 538
L +C+ + +GLRFF+WA Q NYRHSS++Y+KAC LF I++NP + ++ E + +E C
Sbjct: 65 LHKCSLNNSQIGLRFFVWAGYQSNYRHSSFLYSKACKLFNIKQNPQAVLDLFEFYRAEKC 124
Query: 539 LVSVKTYNVVLNLCKQAKLANEGLWLLRKMKEFNCQPDTLAYNVVIRLFCEKGDMDVADR 718
+V++KT+ VVLNLCK+ LANE +LRKM+EF+ Q DT AY +VIRLFC+KGDMD+A +
Sbjct: 125 VVNLKTFKVVLNLCKEGTLANEAFLVLRKMQEFDIQADTKAYTIVIRLFCDKGDMDMAQK 184
Query: 719 LMKEMSVVGLYPDMITYVLMTKGFVDAGRLEGACQLFQVMRGHGCLPNKVMYSALLDGVC 898
LM EMS LYPDM+TYV + KGF D GRLE AC+L + MR HGC+PN V+YS L+DG+C
Sbjct: 185 LMGEMSFNDLYPDMVTYVSIIKGFCDIGRLEEACRLVKEMRAHGCVPNVVVYSTLVDGIC 244
Query: 899 RFGSLDKALQLLGEMEKEGGEYKPNVITYTSVIQSFCEKGKSVEAMCILDRM 1054
RFGS+++AL+LLG MEKEGG+ PNV+TYTSVIQ CEKG++++A +LDRM
Sbjct: 245 RFGSVERALELLGGMEKEGGDCNPNVLTYTSVIQGLCEKGRTMDAFAVLDRM 296
>ref|XP_002326464.1| predicted protein [Populus trichocarpa] gi|222833786|gb|EEE72263.1|
predicted protein [Populus trichocarpa]
Length = 476
Score = 304 bits (779), Expect = 2e-80
Identities = 159/292 (54%), Positives = 206/292 (70%), Gaps = 1/292 (0%)
Frame = +2
Query: 182 RFLTSSIRYTNPIFAFTKSQSFSSSADHYWTQLQKNGSNIETTLSKIR-IQLDTACVIQV 358
R T SI+ P + T + +S + LQ + +N+E TL+ + I+LDT V +
Sbjct: 8 RHFTFSIKPKTPKIS-TLHFATTSLGEKLDAHLQNSPNNVEKTLNSLAPIKLDTKYVNDI 66
Query: 359 LQRCADDRPVLGLRFFIWAALQPNYRHSSYMYNKACSLFKIRRNPGVITNVMEDFWSEGC 538
+ R + + LGLRFFIWA QPNYRH+ Y+YNKACSLFKI++NP VI +++E + E C
Sbjct: 67 IHRWSLNNLQLGLRFFIWAGDQPNYRHNLYIYNKACSLFKIKQNPQVILDLIETYKLEKC 126
Query: 539 LVSVKTYNVVLNLCKQAKLANEGLWLLRKMKEFNCQPDTLAYNVVIRLFCEKGDMDVADR 718
+V V T+ VVL LCK LA+E L +L+KM EFN +PDT AYNVVIR CEKGD+D+A +
Sbjct: 127 VVCVDTFKVVLRLCKAGGLADEALMVLKKMPEFNIRPDTTAYNVVIRSLCEKGDVDMAKK 186
Query: 719 LMKEMSVVGLYPDMITYVLMTKGFVDAGRLEGACQLFQVMRGHGCLPNKVMYSALLDGVC 898
LM EM ++ LYPDMITYV M KGF D GRLE A LF VM HGC PN V YSALLDG+C
Sbjct: 187 LMGEMGLIDLYPDMITYVSMIKGFCDVGRLEEAFALFPVMSVHGCYPNVVAYSALLDGIC 246
Query: 899 RFGSLDKALQLLGEMEKEGGEYKPNVITYTSVIQSFCEKGKSVEAMCILDRM 1054
RFG +++A +LL EMEK+G PNVITYTSVIQSFCE+G++ +A+ +L+ M
Sbjct: 247 RFGIVERAFELLAEMEKQGEGCCPNVITYTSVIQSFCEQGRTKDALSVLELM 298