BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00007590
         (703 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containi...   335   7e-90
emb|CAN70930.1| hypothetical protein VITISV_000387 [Vitis vinifera]   333   2e-89
ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containi...   325   4e-87
ref|XP_002301657.1| predicted protein [Populus trichocarpa] gi|2...   322   5e-86
ref|NP_188050.1| pentatricopeptide repeat-containing protein [Ar...   296   3e-78

>ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
            [Vitis vinifera] gi|296088358|emb|CBI36803.3| unnamed
            protein product [Vitis vinifera]
          Length = 652

 Score =  335 bits (858), Expect = 7e-90
 Identities = 154/234 (65%), Positives = 189/234 (80%)
 Frame = -1

Query: 703  LVDMYAKCGAMDYCLRVFDVMQSKDVTTWNTVLKGYTVSGCMAEAIKLFNEMIHYGYHPD 524
            LVDMYAKCGAMDYC RVF+ MQ KD+T+WNT++ GY ++G M EA++ F EMI  G+ PD
Sbjct: 320  LVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTEAMESFQEMICSGFSPD 379

Query: 523  EVTFITLLSGCSHVGLTNEGQYFFHKMTVEFGIKPTLEHYACLVDLLGRAGEIKEALEVV 344
             +TFI LLSGCSH GL ++G   F  M +++GI PT+EHYACLVD+LGRAG IKEALE+V
Sbjct: 380  GITFIALLSGCSHAGLADDGCRLFEMMKMDYGISPTVEHYACLVDVLGRAGRIKEALEIV 439

Query: 343  NKMPMKPSSSIWGSLLNSCRLHGHVALAELVAAKLFELEPSNPGNYVILSNIYAKAMMWE 164
              MP KP+ SIWGSLLNSCRLHG+V LAE VA +LFELEP+N GNYV+LSNIYA A MWE
Sbjct: 440  KNMPFKPTGSIWGSLLNSCRLHGNVPLAEAVAKRLFELEPNNAGNYVMLSNIYANAGMWE 499

Query: 163  GVKKVRKLMENRGLQKEPGCSWIQIKHRVHTFVAGGSSAFRNTKEFRELWNELM 2
             VK VR+ ME RG+ KE GCSW+QIK ++HTFVAGGS+ FRN+ E++++W  LM
Sbjct: 500  SVKVVREFMEKRGMTKEAGCSWLQIKSKIHTFVAGGSNEFRNSVEYKKVWKRLM 553



 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 44/148 (29%), Positives = 70/148 (47%)
 Frame = -1

Query: 703 LVDMYAKCGAMDYCLRVFDVMQSKDVTTWNTVLKGYTVSGCMAEAIKLFNEMIHYGYHPD 524
           L+ +Y++ G  D  LRVFD M  ++V +WN+++ G      + EAI+ F  M   G    
Sbjct: 219 LLRLYSEDGCFDEALRVFDGMPHRNVVSWNSLIAGLVKKDGVFEAIEAFRIMQGKGMGFS 278

Query: 523 EVTFITLLSGCSHVGLTNEGQYFFHKMTVEFGIKPTLEHYACLVDLLGRAGEIKEALEVV 344
            VT  T+L  C+ V     G+   H + V+   KP       LVD+  + G +     V 
Sbjct: 279 WVTLTTILPVCARVTALGSGKE-IHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVF 337

Query: 343 NKMPMKPSSSIWGSLLNSCRLHGHVALA 260
           N M  K  +S W +L+    ++G +  A
Sbjct: 338 NGMQGKDLTS-WNTLITGYAINGRMTEA 364


>emb|CAN70930.1| hypothetical protein VITISV_000387 [Vitis vinifera]
          Length = 773

 Score =  333 bits (854), Expect = 2e-89
 Identities = 154/234 (65%), Positives = 188/234 (80%)
 Frame = -1

Query: 703  LVDMYAKCGAMDYCLRVFDVMQSKDVTTWNTVLKGYTVSGCMAEAIKLFNEMIHYGYHPD 524
            LVDMYAKCGAMDYC RVF+ MQ KD+T+WNT++ GY ++G M EA++ F EMI  G+ PD
Sbjct: 319  LVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTEAMESFQEMICSGFSPD 378

Query: 523  EVTFITLLSGCSHVGLTNEGQYFFHKMTVEFGIKPTLEHYACLVDLLGRAGEIKEALEVV 344
             +TFI LLSGCSH GL ++G   F  M ++ GI PT+EHYACLVD+LGRAG IKEALE+V
Sbjct: 379  GITFIALLSGCSHAGLADDGCRLFEMMKMDHGISPTVEHYACLVDVLGRAGRIKEALEIV 438

Query: 343  NKMPMKPSSSIWGSLLNSCRLHGHVALAELVAAKLFELEPSNPGNYVILSNIYAKAMMWE 164
              MP KP+ SIWGSLLNSCRLHG+V LAE VA +LFELEP+N GNYV+LSNIYA A MWE
Sbjct: 439  KNMPFKPTGSIWGSLLNSCRLHGNVPLAEAVAKRLFELEPNNAGNYVMLSNIYANAGMWE 498

Query: 163  GVKKVRKLMENRGLQKEPGCSWIQIKHRVHTFVAGGSSAFRNTKEFRELWNELM 2
             VK VR+ ME RG+ KE GCSW+QIK ++HTFVAGGS+ FRN+ E++++W  LM
Sbjct: 499  SVKVVREFMEKRGMTKEAGCSWLQIKSKIHTFVAGGSNEFRNSVEYKKVWKRLM 552



 Score = 60.5 bits (145), Expect = 3e-07
 Identities = 41/148 (27%), Positives = 70/148 (47%)
 Frame = -1

Query: 703 LVDMYAKCGAMDYCLRVFDVMQSKDVTTWNTVLKGYTVSGCMAEAIKLFNEMIHYGYHPD 524
           L+ +Y++ G  +  LR+FD M  +++ +WN+++ G      + EAI+ F  M   G    
Sbjct: 218 LLRLYSEDGCFEEALRMFDGMPHRNLVSWNSLIAGLVKKEGVFEAIEAFRIMQGKGMGFS 277

Query: 523 EVTFITLLSGCSHVGLTNEGQYFFHKMTVEFGIKPTLEHYACLVDLLGRAGEIKEALEVV 344
            VT  T+L  C+ V     G+   H + V+   KP       LVD+  + G +     V 
Sbjct: 278 WVTLTTILPVCARVTALGSGKE-IHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVF 336

Query: 343 NKMPMKPSSSIWGSLLNSCRLHGHVALA 260
           N M  K  +S W +L+    ++G +  A
Sbjct: 337 NGMQGKDLTS-WNTLITGYAINGRMTEA 363


>ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330-like
            [Glycine max]
          Length = 650

 Score =  325 bits (834), Expect = 4e-87
 Identities = 146/233 (62%), Positives = 194/233 (83%)
 Frame = -1

Query: 703  LVDMYAKCGAMDYCLRVFDVMQSKDVTTWNTVLKGYTVSGCMAEAIKLFNEMIHYGYHPD 524
            L+DMYAKCG + YC +VFD M SKD+T+WNT+L G++++G + EA+ LF+EMI YG  P+
Sbjct: 318  LMDMYAKCGEIGYCEKVFDRMHSKDLTSWNTMLAGFSINGQIHEALCLFDEMIRYGIEPN 377

Query: 523  EVTFITLLSGCSHVGLTNEGQYFFHKMTVEFGIKPTLEHYACLVDLLGRAGEIKEALEVV 344
             +TF+ LLSGCSH GLT+EG+  F  +  +FG++P+LEHYACLVD+LGR+G+  EAL V 
Sbjct: 378  GITFVALLSGCSHSGLTSEGKRLFSNVMQDFGVQPSLEHYACLVDILGRSGKFDEALSVA 437

Query: 343  NKMPMKPSSSIWGSLLNSCRLHGHVALAELVAAKLFELEPSNPGNYVILSNIYAKAMMWE 164
              +PM+PS SIWGSLLNSCRL+G+VALAE+VA +LFE+EP+NPGNYV+LSNIYA A MWE
Sbjct: 438  ENIPMRPSGSIWGSLLNSCRLYGNVALAEVVAERLFEIEPNNPGNYVMLSNIYANAGMWE 497

Query: 163  GVKKVRKLMENRGLQKEPGCSWIQIKHRVHTFVAGGSSAFRNTKEFRELWNEL 5
             VK+VR++M   G++K+ GCSWIQIKH++HTFVAGGSS FR + E++++WNEL
Sbjct: 498  DVKRVREMMALTGMKKDAGCSWIQIKHKIHTFVAGGSSDFRCSAEYKKIWNEL 550



 Score = 69.3 bits (168), Expect = 7e-10
 Identities = 49/197 (24%), Positives = 91/197 (46%), Gaps = 2/197 (1%)
 Frame = -1

Query: 703 LVDMYAKCGAMDYCLRVFDVMQSKDVTTWNTVLKGYTVSGCMAEAIKLFNEMIHYGYHPD 524
           L+ +Y + G  D  L+VF+ M  ++V +WNT++ G+   G + E +  F  M   G    
Sbjct: 217 LLGLYVEIGCFDEVLKVFEEMPQRNVVSWNTLIAGFAGQGRVFETLSAFRVMQREGMGFS 276

Query: 523 EVTFITLLSGCSHVGLTNEGQYFFHKMTVEFGIKPTLEHYACLVDLLGRAGEIKEALEVV 344
            +T  T+L  C+ V   + G+   H   ++      +     L+D+  + GEI    +V 
Sbjct: 277 WITLTTMLPVCAQVTALHSGKE-IHGQILKSRKNADVPLLNSLMDMYAKCGEIGYCEKVF 335

Query: 343 NKMPMKPSSSIWGSLLNSCRLHG--HVALAELVAAKLFELEPSNPGNYVILSNIYAKAMM 170
           ++M  K  +S W ++L    ++G  H AL        + +EP+      +LS      + 
Sbjct: 336 DRMHSKDLTS-WNTMLAGFSINGQIHEALCLFDEMIRYGIEPNGITFVALLSGCSHSGLT 394

Query: 169 WEGVKKVRKLMENRGLQ 119
            EG +    +M++ G+Q
Sbjct: 395 SEGKRLFSNVMQDFGVQ 411


>ref|XP_002301657.1| predicted protein [Populus trichocarpa] gi|222843383|gb|EEE80930.1|
           predicted protein [Populus trichocarpa]
          Length = 504

 Score =  322 bits (825), Expect = 5e-86
 Identities = 147/233 (63%), Positives = 184/233 (78%)
 Frame = -1

Query: 703 LVDMYAKCGAMDYCLRVFDVMQSKDVTTWNTVLKGYTVSGCMAEAIKLFNEMIHYGYHPD 524
           LVDMY KCG +DY  R+FD M+SKD+T+WNT+L GY ++G M  A+ LFNEM   G  PD
Sbjct: 172 LVDMYVKCGVVDYGRRLFDGMRSKDLTSWNTMLTGYAINGYMRVAMDLFNEMASCGIRPD 231

Query: 523 EVTFITLLSGCSHVGLTNEGQYFFHKMTVEFGIKPTLEHYACLVDLLGRAGEIKEALEVV 344
           +VTFI LLSGCSH GLT +GQ  FH+M ++FG+ P+LEHYACLVD+LGRAG I  AL VV
Sbjct: 232 DVTFIALLSGCSHAGLTEDGQKLFHRMEMDFGVSPSLEHYACLVDMLGRAGRIDAALVVV 291

Query: 343 NKMPMKPSSSIWGSLLNSCRLHGHVALAELVAAKLFELEPSNPGNYVILSNIYAKAMMWE 164
             MPMK S SIWGSLLNSCRLH  V LAE +A +LFELEP NPGNYV+LSNIYA A MW+
Sbjct: 292 KNMPMKTSGSIWGSLLNSCRLHNEVPLAEAIANRLFELEPYNPGNYVMLSNIYANAGMWD 351

Query: 163 GVKKVRKLMENRGLQKEPGCSWIQIKHRVHTFVAGGSSAFRNTKEFRELWNEL 5
            V  VR++M+ R ++KE GCSWIQ+K+++H+FVAGG   FRN+ E++++WN+L
Sbjct: 352 SVNMVREMMQTRRIRKEAGCSWIQVKNKIHSFVAGGGFEFRNSDEYKKIWNKL 404



 Score = 62.8 bits (151), Expect = 7e-08
 Identities = 38/148 (25%), Positives = 72/148 (48%)
 Frame = -1

Query: 703 LVDMYAKCGAMDYCLRVFDVMQSKDVTTWNTVLKGYTVSGCMAEAIKLFNEMIHYGYHPD 524
           L+ +Y +C   +  L+VFD M  ++V +WN+++ G+     + EA+ +F  M   G    
Sbjct: 71  LLRLYTQCECFNEVLKVFDQMPERNVASWNSLISGFVKEDKLGEALDVFRRMQREGMGFS 130

Query: 523 EVTFITLLSGCSHVGLTNEGQYFFHKMTVEFGIKPTLEHYACLVDLLGRAGEIKEALEVV 344
            VT  T+L  C+ V     G+   H   V+   +P +     LVD+  + G +     + 
Sbjct: 131 WVTLTTILPICARVTALLSGKE-IHAQIVKSARRPDVLVLNSLVDMYVKCGVVDYGRRLF 189

Query: 343 NKMPMKPSSSIWGSLLNSCRLHGHVALA 260
           + M  K  +S W ++L    ++G++ +A
Sbjct: 190 DGMRSKDLTS-WNTMLTGYAINGYMRVA 216


>ref|NP_188050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|218546762|sp|Q9LUL5.2|PP229_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At3g14330 gi|332641981|gb|AEE75502.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  296 bits (758), Expect = 3e-78
 Identities = 133/233 (57%), Positives = 176/233 (75%)
 Frame = -1

Query: 703  LVDMYAKCGAMDYCLRVFDVMQSKDVTTWNTVLKGYTVSGCMAEAIKLFNEMIHYGYHPD 524
            L+DMY KCG ++Y  RVFDVM +KD+ +WN +L  Y ++G + E I LF  MI  G  PD
Sbjct: 378  LMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAINGNIEEVINLFEWMIESGVAPD 437

Query: 523  EVTFITLLSGCSHVGLTNEGQYFFHKMTVEFGIKPTLEHYACLVDLLGRAGEIKEALEVV 344
             +TF+ LLSGCS  GLT  G   F +M  EF + P LEHYACLVD+LGRAG+IKEA++V+
Sbjct: 438  GITFVALLSGCSDTGLTEYGLSLFERMKTEFRVSPALEHYACLVDILGRAGKIKEAVKVI 497

Query: 343  NKMPMKPSSSIWGSLLNSCRLHGHVALAELVAAKLFELEPSNPGNYVILSNIYAKAMMWE 164
              MP KPS+SIWGSLLNSCRLHG+V++ E+ A +LF LEP NPGNYV++SNIYA A MW+
Sbjct: 498  ETMPFKPSASIWGSLLNSCRLHGNVSVGEIAAKELFVLEPHNPGNYVMVSNIYADAKMWD 557

Query: 163  GVKKVRKLMENRGLQKEPGCSWIQIKHRVHTFVAGGSSAFRNTKEFRELWNEL 5
             V K+R++M+ RG++KE GCSW+Q+K ++  FVAGG   FRN+ E++++W EL
Sbjct: 558  NVDKIREMMKQRGVKKEAGCSWVQVKDKIQIFVAGGGYEFRNSDEYKKVWTEL 610



 Score = 60.1 bits (144), Expect = 4e-07
 Identities = 39/145 (26%), Positives = 69/145 (47%)
 Frame = -1

Query: 703 LVDMYAKCGAMDYCLRVFDVMQSKDVTTWNTVLKGYTVSGCMAEAIKLFNEMIHYGYHPD 524
           L+ +Y + G  D   +VFD M  ++V TWN+++   +    + E   LF +M        
Sbjct: 277 LLKLYMESGLFDDARKVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFS 336

Query: 523 EVTFITLLSGCSHVGLTNEGQYFFHKMTVEFGIKPTLEHYACLVDLLGRAGEIKEALEVV 344
             T  T+L  CS V     G+   H   ++   KP +     L+D+ G+ GE++ +  V 
Sbjct: 337 WATLTTILPACSRVAALLTGKE-IHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVF 395

Query: 343 NKMPMKPSSSIWGSLLNSCRLHGHV 269
           + M  K  +S W  +LN   ++G++
Sbjct: 396 DVMLTKDLAS-WNIMLNCYAINGNI 419