BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00007300
         (1039 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta...   327   4e-87
ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein...   317   2e-84
ref|XP_002316628.1| PAF1 complex component [Populus trichocarpa]...   309   8e-82
ref|XP_002305685.1| PAF1 complex component [Populus trichocarpa]...   308   1e-81
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...   304   2e-80

>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
            gi|223541691|gb|EEF43239.1| RNA polymerase-associated
            protein RTF1, putative [Ricinus communis]
          Length = 660

 Score =  327 bits (837), Expect = 4e-87
 Identities = 176/349 (50%), Positives = 236/349 (67%), Gaps = 3/349 (0%)
 Frame = +1

Query: 1    MILSERSTKITDKKMQEKLR--KQKEKMNQSRKDSHPHIXXXXXXXXXXXXXXXXXXXXX 174
            MILSER+ K  DK + E++R  ++ E+  +SRK++ P +                     
Sbjct: 128  MILSERADKKGDKNLTERIRSKRESERTTRSRKETPP-LPSSRGVRTSARSADRAAAKDD 186

Query: 175  XLNELRAKRMRQKDPDTHQRFGDLTKGGSGSHRYSPVKRRSFPAKAAXXXXXXXXXXXXX 354
             LNEL+A+R++Q+DP+ H++  D ++ GSGS  +SP+KR+ F + +              
Sbjct: 187  ALNELKARRLKQQDPEAHRKLRDASRRGSGSRGFSPIKRKRFTSASLSSSSSESESRSHS 246

Query: 355  XXXXXXXXXXXXXXXXXXXPDSTVLTYDDVKEITIQRSKLAKWLMEPFFDDLIVGCFVRV 534
                               P S   T+DD++EITI+RSKLAKW MEP+F++LIVGCFVRV
Sbjct: 247  EDEGSTGDGGMADSDDDGEPGSQGPTFDDIREITIRRSKLAKWFMEPWFEELIVGCFVRV 306

Query: 535  AI-MSKTGPTHSLCVVRNVESEYSGKQYKLDNKMTHKYLNAVWGNGSSADRLQMDRVSNS 711
             I  SK+GP + LC+VRNV++    + YKL+NK T+KYLN +WGN SSA R QM  +S+S
Sbjct: 307  GIGRSKSGPIYRLCLVRNVDAADPDRPYKLENKTTYKYLNVIWGNESSAARWQMAMISDS 366

Query: 712  PPTEMEFEQWVREVERNVGQMPSKQDVLDKKDAIQKTSTYVYSAATVKQMVHEKKSATSS 891
             PTE E++QWVREVER+ G+MP+KQD+L+KK+AI+K++T+VYSAATVKQM+ EKKSA  S
Sbjct: 367  APTEDEYKQWVREVERSGGRMPTKQDILEKKEAIRKSNTFVYSAATVKQMLQEKKSA--S 424

Query: 892  SRPLNVLAEKDRLRREMEVALGMNDGAEVERIKARLSELEASRQTQEKD 1038
            SRPLNV AEKDRLRRE+EVA    D AEVERI+AR+ ELEASRQTQ KD
Sbjct: 425  SRPLNVAAEKDRLRRELEVAQSKQDDAEVERIRARIQELEASRQTQGKD 473


>ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis
            sativus] gi|449517636|ref|XP_004165851.1| PREDICTED: RNA
            polymerase-associated protein RTF1 homolog [Cucumis
            sativus]
          Length = 660

 Score =  317 bits (813), Expect = 2e-84
 Identities = 175/351 (49%), Positives = 232/351 (66%), Gaps = 5/351 (1%)
 Frame = +1

Query: 1    MILSERSTKITDKKMQEKLRKQ--KEKMNQSRKDSHPHIXXXXXXXXXXXXXXXXXXXXX 174
            MILS+R++K  DK + E LR +  K K   SRK++ P                       
Sbjct: 128  MILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPP--LPSSRIRSSARSADRAAAKDD 185

Query: 175  XLNELRAKRMRQKDPDTHQRFGDLTKGGSGSHRYSPVKRRSF--PAKAAXXXXXXXXXXX 348
             LNELRAKR++Q+DP+ H++  D ++G + S R+SP KR+ F  P+ ++           
Sbjct: 186  ALNELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSLSSSSQSESESRFQ 245

Query: 349  XXXXXXXXXXXXXXXXXXXXXPDSTVLTYDDVKEITIQRSKLAKWLMEPFFDDLIVGCFV 528
                                 P S   T++D+KE+TI+RSKLAKWLMEPFF++LIVGCFV
Sbjct: 246  SDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEPFFEELIVGCFV 305

Query: 529  RVAI-MSKTGPTHSLCVVRNVESEYSGKQYKLDNKMTHKYLNAVWGNGSSADRLQMDRVS 705
            RV I  S++GP + LC+VRNV++    +QYKL+NK+THKYLN +WGN +SA R QM  VS
Sbjct: 306  RVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNEASAARWQMAMVS 365

Query: 706  NSPPTEMEFEQWVREVERNVGQMPSKQDVLDKKDAIQKTSTYVYSAATVKQMVHEKKSAT 885
            +S P E E++QWV+EVER  G+M SKQD+L+KK+AIQK + +VYSAATVKQM+ +KKSA 
Sbjct: 366  DSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAATVKQMLQDKKSA- 424

Query: 886  SSSRPLNVLAEKDRLRREMEVALGMNDGAEVERIKARLSELEASRQTQEKD 1038
             S+RPLN+ AEKDRLRREM+VA+  ND AEVERIK RL +LEASR+ Q KD
Sbjct: 425  -SARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQLEASRRLQMKD 474


>ref|XP_002316628.1| PAF1 complex component [Populus trichocarpa]
            gi|222859693|gb|EEE97240.1| PAF1 complex component
            [Populus trichocarpa]
          Length = 664

 Score =  309 bits (791), Expect = 8e-82
 Identities = 170/351 (48%), Positives = 232/351 (66%), Gaps = 5/351 (1%)
 Frame = +1

Query: 1    MILSERSTKITDKKMQEKLRKQKE--KMNQSRKDSHPHIXXXXXXXXXXXXXXXXXXXXX 174
            +IL++R+ K  DK + EK+R +++  K  +SRK++ P +                     
Sbjct: 129  LILADRADKKGDKHLTEKIRSKRDNDKPTRSRKETPP-LPSSRGVRSSARSADRAAAKDD 187

Query: 175  XLNELRAKRMRQKDPDTHQRFGDLTKGGSGSHRYSPVKRRSFPAK--AAXXXXXXXXXXX 348
             LNELRAKR++Q+DP+ H++  D ++G +GS  ++ VK+ +F +   ++           
Sbjct: 188  ALNELRAKRLKQQDPEAHRKLRDASRGSAGSRGFAQVKKNNFTSARLSSSSSESESGSRS 247

Query: 349  XXXXXXXXXXXXXXXXXXXXXPDSTVLTYDDVKEITIQRSKLAKWLMEPFFDDLIVGCFV 528
                                 P S   TY+D+KEITI+R+KLAKW MEP+F++LI+GCFV
Sbjct: 248  HSEDEGSTGDGGMADSDEDGDPGSRGPTYEDIKEITIRRTKLAKWFMEPWFEELIIGCFV 307

Query: 529  RVAI-MSKTGPTHSLCVVRNVESEYSGKQYKLDNKMTHKYLNAVWGNGSSADRLQMDRVS 705
            RV I  SKTGP + LC+VRNV++    K YKL+NK T+KYLN  WG  SSA R QM  VS
Sbjct: 308  RVGIGRSKTGPVYRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGADSSAARWQMAMVS 367

Query: 706  NSPPTEMEFEQWVREVERNVGQMPSKQDVLDKKDAIQKTSTYVYSAATVKQMVHEKKSAT 885
            +S PTE E++QWVRE ER  G++PSKQD+L+KK+AI+K++T+VYSAATVKQM+ EKKSA 
Sbjct: 368  DSAPTEEEYKQWVREAERGGGRLPSKQDILEKKEAIRKSNTFVYSAATVKQMLQEKKSA- 426

Query: 886  SSSRPLNVLAEKDRLRREMEVALGMNDGAEVERIKARLSELEASRQTQEKD 1038
             SSRPLNV AEKDRLRRE+E+A   +D AEVERI+AR+ ELEASRQ + KD
Sbjct: 427  -SSRPLNVAAEKDRLRRELEIAQSRHDEAEVERIEARILELEASRQAKVKD 476


>ref|XP_002305685.1| PAF1 complex component [Populus trichocarpa]
            gi|222848649|gb|EEE86196.1| PAF1 complex component
            [Populus trichocarpa]
          Length = 662

 Score =  308 bits (790), Expect = 1e-81
 Identities = 168/349 (48%), Positives = 229/349 (65%), Gaps = 3/349 (0%)
 Frame = +1

Query: 1    MILSERSTKITDKKMQEKLR--KQKEKMNQSRKDSHPHIXXXXXXXXXXXXXXXXXXXXX 174
            +IL++R+ K  DK + EK+R  +  +K  +SRK++ P +                     
Sbjct: 129  LILADRADKKGDKHLTEKIRLKRDNDKPTRSRKETPP-LPSSRGVRSSARSADRAAAKDD 187

Query: 175  XLNELRAKRMRQKDPDTHQRFGDLTKGGSGSHRYSPVKRRSFPAKAAXXXXXXXXXXXXX 354
             LNELRAKR++Q+DP+ H++  D+++G +GS  +S VK+ +F + +              
Sbjct: 188  ALNELRAKRLKQQDPEAHRKLRDVSRGSAGSRGFSQVKKNNFTSASLSSSSSESGSRSHS 247

Query: 355  XXXXXXXXXXXXXXXXXXXPDSTVLTYDDVKEITIQRSKLAKWLMEPFFDDLIVGCFVRV 534
                               P S   TY+D+KEITI+R+KLAKW MEP+F++LI+GCFVRV
Sbjct: 248  EDEGSTGDGGMADSDEDVEPGSKGPTYEDIKEITIRRTKLAKWFMEPWFEELIIGCFVRV 307

Query: 535  AI-MSKTGPTHSLCVVRNVESEYSGKQYKLDNKMTHKYLNAVWGNGSSADRLQMDRVSNS 711
             I  SK+GP + LC+VRNV++    K YKL+NK T+KYLN  WG  +SA R QM  VS+S
Sbjct: 308  GIGRSKSGPVYRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGADTSAARWQMAMVSDS 367

Query: 712  PPTEMEFEQWVREVERNVGQMPSKQDVLDKKDAIQKTSTYVYSAATVKQMVHEKKSATSS 891
             PTE E++QWVREVE   G++PSKQD+L+KK+AI+K++T+VYSAATVKQM+ EKKSA  S
Sbjct: 368  GPTEEEYKQWVREVECGGGRLPSKQDILEKKEAIRKSNTFVYSAATVKQMLQEKKSA--S 425

Query: 892  SRPLNVLAEKDRLRREMEVALGMNDGAEVERIKARLSELEASRQTQEKD 1038
            SRPLNV AEKDRLRRE+E+A   +D AEVERI AR+ ELEASR  + KD
Sbjct: 426  SRPLNVAAEKDRLRRELEIAQSKHDEAEVERINARIEELEASRHAKVKD 474


>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
            max]
          Length = 656

 Score =  304 bits (779), Expect = 2e-80
 Identities = 177/351 (50%), Positives = 226/351 (64%), Gaps = 5/351 (1%)
 Frame = +1

Query: 1    MILSERSTKITDKKMQEKL--RKQKEKMNQSRKDSHPHIXXXXXXXXXXXXXXXXXXXXX 174
            MILS+R+TK  DK +  K+  +++K K+   RK S P                       
Sbjct: 127  MILSDRATKKDDKNLLGKIASKREKGKVAVPRKQSPP---MSSSRMRASARSADRSAKND 183

Query: 175  XLNELRAKRMRQKDPDTHQRFGDLTKGGSGSHRYSPVKRRSFPAKA--AXXXXXXXXXXX 348
             LNELRAKR++Q+DP+ H+R  + ++  +GS  +SP KR+ F + +  +           
Sbjct: 184  ALNELRAKRLKQQDPEAHRRLREASRN-AGSRHFSPPKRKPFTSTSLSSSSHSESESRSH 242

Query: 349  XXXXXXXXXXXXXXXXXXXXXPDSTVLTYDDVKEITIQRSKLAKWLMEPFFDDLIVGCFV 528
                                   S   ++ DVKEITI+RSKLAKW MEPFF++LIVGCFV
Sbjct: 243  SDDEGSTGDGGIVDSDDDRALAGSEGPSFQDVKEITIRRSKLAKWFMEPFFEELIVGCFV 302

Query: 529  RVAI-MSKTGPTHSLCVVRNVESEYSGKQYKLDNKMTHKYLNAVWGNGSSADRLQMDRVS 705
            RV I  SKTGP + LC+V+NV++    +QYKL+NK T+KYLN VWGN SSA R QM  VS
Sbjct: 303  RVGIGRSKTGPIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVS 362

Query: 706  NSPPTEMEFEQWVREVERNVGQMPSKQDVLDKKDAIQKTSTYVYSAATVKQMVHEKKSAT 885
            +S P E EF+QWV+EV+R+ G+MPSKQDVL+KK AIQK  T+VYSAATVKQM+ EKKSA 
Sbjct: 363  DSAPLEEEFKQWVKEVDRSGGRMPSKQDVLEKKQAIQKAITFVYSAATVKQMLQEKKSA- 421

Query: 886  SSSRPLNVLAEKDRLRREMEVALGMNDGAEVERIKARLSELEASRQTQEKD 1038
             S+RPLNV AEKDRLRRE+E+A    D AEVERIK RL ELEASRQ ++KD
Sbjct: 422  -STRPLNVAAEKDRLRRELEIAQSKYDEAEVERIKTRLLELEASRQAKQKD 471