BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00007199
         (1126 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276964.1| PREDICTED: peptide deformylase 1B, chloropla...   370   e-100
ref|XP_002300047.1| peptide deformylase [Populus trichocarpa] gi...   364   2e-98
ref|XP_004158319.1| PREDICTED: peptide deformylase 1B, chloropla...   358   2e-96
ref|XP_002521451.1| polypeptide deformylase, putative [Ricinus c...   355   9e-96
ref|NP_001234441.1| peptide deformylase 1B, chloroplastic [Solan...   339   8e-91

>ref|XP_002276964.1| PREDICTED: peptide deformylase 1B, chloroplastic [Vitis vinifera]
           gi|296087647|emb|CBI34903.3| unnamed protein product
           [Vitis vinifera]
          Length = 275

 Score =  370 bits (950), Expect = e-100
 Identities = 191/272 (70%), Positives = 218/272 (80%), Gaps = 1/272 (0%)
 Frame = +3

Query: 48  ATWLHSSSFAASRFLPFLFRRNVTLRSDSRRFSTTTGNILFFS-KRFRRPAASVYAQAKR 224
           A+ LHSS + ++ FLP L  R+    S S      + +  F S  RFR P   V  QAKR
Sbjct: 4   ASCLHSS-YLSNTFLPILRHRSALSTSTSHLHRFCSPSRFFSSANRFRLPLMQVQVQAKR 62

Query: 225 GLSTTDVEIASDSDLFFEAPLKIVEYPDPILRAKNKRVNTFDDNLKKLVDEMFDIMYKTD 404
           G S  +  IAS +DL FEAPLKIVEYPDPILRAKNK ++TFDDNLKKLVDEMFD+MYKTD
Sbjct: 63  GFSFKEEVIASPADLSFEAPLKIVEYPDPILRAKNKLISTFDDNLKKLVDEMFDVMYKTD 122

Query: 405 GIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVTKYSKKMVLFDEGCLSFPGIYAD 584
           GIGLSAPQVG+NVQLMVFNPVGERGEGEEIVLVNPRV KYSKK+VLF+EGCLSFPGIYAD
Sbjct: 123 GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSKKIVLFNEGCLSFPGIYAD 182

Query: 585 VKRPESVKIDARDVTGVRFNFSLSGLPARVFQHEFDHLQGVLFFERMTEDVLESVRPQLQ 764
           V+RPESVKIDARD+TG RF  +LSGLPARVFQHEFDHLQG LFF+RMTE+VL+S+   LQ
Sbjct: 183 VERPESVKIDARDITGARFMINLSGLPARVFQHEFDHLQGTLFFDRMTEEVLDSIHANLQ 242

Query: 765 ALEKKYEDKTGQTSPERVDNIKLKKVPVGFGK 860
            LE+KYED+TG  SPER++  K +KV  GFGK
Sbjct: 243 DLERKYEDRTGFPSPERIETRKRRKVAAGFGK 274


>ref|XP_002300047.1| peptide deformylase [Populus trichocarpa]
           gi|222847305|gb|EEE84852.1| peptide deformylase [Populus
           trichocarpa]
          Length = 258

 Score =  364 bits (935), Expect = 2e-98
 Identities = 187/259 (72%), Positives = 212/259 (81%), Gaps = 2/259 (0%)
 Frame = +3

Query: 90  LPFLFRRNVTLRSDSR--RFSTTTGNILFFSKRFRRPAASVYAQAKRGLSTTDVEIASDS 263
           LP+L  R  TL    R  RFS+T        K+ R P+  V +QAKRG      ++A+ S
Sbjct: 7   LPYLHSRTQTLCEPIRLARFSSTM-------KQPRPPSLFVRSQAKRGPFLKQDQVAATS 59

Query: 264 DLFFEAPLKIVEYPDPILRAKNKRVNTFDDNLKKLVDEMFDIMYKTDGIGLSAPQVGVNV 443
           DL FEAPLKIVEYPDPILRAKNKR+++FDDNLKKLVDEMFD+MYKTDGIGLSAPQVG+NV
Sbjct: 60  DLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVDEMFDVMYKTDGIGLSAPQVGINV 119

Query: 444 QLMVFNPVGERGEGEEIVLVNPRVTKYSKKMVLFDEGCLSFPGIYADVKRPESVKIDARD 623
           QLMVFNP  E GEG+EIVLVNPRV KYSKK VLF+EGCLSFPGIYADVKRPESVKIDARD
Sbjct: 120 QLMVFNPADEHGEGDEIVLVNPRVNKYSKKTVLFNEGCLSFPGIYADVKRPESVKIDARD 179

Query: 624 VTGVRFNFSLSGLPARVFQHEFDHLQGVLFFERMTEDVLESVRPQLQALEKKYEDKTGQT 803
           + G RF  +LSGLPARVFQHEFDHLQG+LFF+RMTE+VL+S+RP LQALEKKYEDKTG  
Sbjct: 180 INGARFTVNLSGLPARVFQHEFDHLQGILFFDRMTEEVLDSIRPGLQALEKKYEDKTGFP 239

Query: 804 SPERVDNIKLKKVPVGFGK 860
           SPER++  +LKKV  GFGK
Sbjct: 240 SPERIETHRLKKVAAGFGK 258


>ref|XP_004158319.1| PREDICTED: peptide deformylase 1B, chloroplastic-like [Cucumis
           sativus]
          Length = 273

 Score =  358 bits (918), Expect = 2e-96
 Identities = 181/256 (70%), Positives = 210/256 (82%)
 Frame = +3

Query: 93  PFLFRRNVTLRSDSRRFSTTTGNILFFSKRFRRPAASVYAQAKRGLSTTDVEIASDSDLF 272
           P +FRR     S  + FS         S +F+ P+  VYAQAKRG S  + ++AS  DL 
Sbjct: 26  PAVFRRLSGFSSTCKLFS--------HSSKFKAPSTLVYAQAKRGFSAKEDDVASSVDLE 77

Query: 273 FEAPLKIVEYPDPILRAKNKRVNTFDDNLKKLVDEMFDIMYKTDGIGLSAPQVGVNVQLM 452
           FEAPLKIVEYPDPILRAKNKR+ +FDDNLKKLV EMFD+MYKTDGIGLSAPQVGVNVQLM
Sbjct: 78  FEAPLKIVEYPDPILRAKNKRIGSFDDNLKKLVQEMFDVMYKTDGIGLSAPQVGVNVQLM 137

Query: 453 VFNPVGERGEGEEIVLVNPRVTKYSKKMVLFDEGCLSFPGIYADVKRPESVKIDARDVTG 632
           VFN VGERGEGEEIVLVNP+V +YSKK VLF+EGCLSFP IYADV+RPES+KIDARD++G
Sbjct: 138 VFNSVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPMIYADVERPESIKIDARDISG 197

Query: 633 VRFNFSLSGLPARVFQHEFDHLQGVLFFERMTEDVLESVRPQLQALEKKYEDKTGQTSPE 812
            RF  +LSGL ARVFQHEFDHLQG LFF+RMT++VLE++RPQLQALEKKYED+TG  SPE
Sbjct: 198 TRFMVNLSGLSARVFQHEFDHLQGTLFFDRMTDEVLETIRPQLQALEKKYEDRTGLPSPE 257

Query: 813 RVDNIKLKKVPVGFGK 860
           R++N + +KV  GFGK
Sbjct: 258 RIENFR-RKVGAGFGK 272


>ref|XP_002521451.1| polypeptide deformylase, putative [Ricinus communis]
           gi|223539350|gb|EEF40941.1| polypeptide deformylase,
           putative [Ricinus communis]
          Length = 282

 Score =  355 bits (912), Expect = 9e-96
 Identities = 178/257 (69%), Positives = 210/257 (81%)
 Frame = +3

Query: 90  LPFLFRRNVTLRSDSRRFSTTTGNILFFSKRFRRPAASVYAQAKRGLSTTDVEIASDSDL 269
           LP LFR+      ++ RF+  +    F S   + P+  V AQAKR  S  + EIA+ +DL
Sbjct: 27  LPVLFRQT-GFSCNNFRFNQLSSTARF-SSIAKPPSIPVRAQAKRSFSFKEEEIATPADL 84

Query: 270 FFEAPLKIVEYPDPILRAKNKRVNTFDDNLKKLVDEMFDIMYKTDGIGLSAPQVGVNVQL 449
            FE PLKIVEYPDPILR KNKR++TFDDNLKKLVDEMFD+MYKTDGIGLSAPQVG+NVQL
Sbjct: 85  CFEEPLKIVEYPDPILRRKNKRIDTFDDNLKKLVDEMFDVMYKTDGIGLSAPQVGINVQL 144

Query: 450 MVFNPVGERGEGEEIVLVNPRVTKYSKKMVLFDEGCLSFPGIYADVKRPESVKIDARDVT 629
           MVFNPVGERGEGEEIVL+NPR+ KYSKK+V F+EGCLSFPGIYADV RPESVKIDARD+ 
Sbjct: 145 MVFNPVGERGEGEEIVLINPRLNKYSKKIVPFNEGCLSFPGIYADVLRPESVKIDARDIN 204

Query: 630 GVRFNFSLSGLPARVFQHEFDHLQGVLFFERMTEDVLESVRPQLQALEKKYEDKTGQTSP 809
           G RF  +LSGLPARVFQHE+DHL+G+LFF+RMT++VL+S+R QLQALEKK+EDKTG  SP
Sbjct: 205 GARFTVNLSGLPARVFQHEYDHLEGILFFDRMTDEVLDSIRAQLQALEKKFEDKTGYASP 264

Query: 810 ERVDNIKLKKVPVGFGK 860
           E+++  K KK   GFGK
Sbjct: 265 EKIETRKTKKAAAGFGK 281


>ref|NP_001234441.1| peptide deformylase 1B, chloroplastic [Solanum lycopersicum]
           gi|17433052|sp|Q9FV54.1|DEF1B_SOLLC RecName:
           Full=Peptide deformylase 1B, chloroplastic; Short=PDF
           1B; AltName: Full=Polypeptide deformylase; Flags:
           Precursor gi|11320950|gb|AAG33972.1| peptide
           deformylase-like protein [Solanum lycopersicum]
          Length = 279

 Score =  339 bits (869), Expect = 8e-91
 Identities = 178/277 (64%), Positives = 216/277 (77%), Gaps = 4/277 (1%)
 Frame = +3

Query: 42  STATWLHSSSFAASRFLPFLFRRNVTLRSDSRRFST-TTGNILFFSKRFRRPAA-SVYAQ 215
           + A+W  SSSF  +RFL  L  RN +    S       + N LFFS    +P   +VYAQ
Sbjct: 4   AAASWASSSSF--TRFLRPLLSRNSSPSPISYSLHRYKSANCLFFSASSNKPPKLAVYAQ 61

Query: 216 AKRGLS--TTDVEIASDSDLFFEAPLKIVEYPDPILRAKNKRVNTFDDNLKKLVDEMFDI 389
           A+R LS  T   EIA+ +DL F  PLKIVEYPDPILRAKNKR++ FD NLKKLVDEMFDI
Sbjct: 62  ARRVLSSKTKGDEIATPADLSFVVPLKIVEYPDPILRAKNKRIDNFDANLKKLVDEMFDI 121

Query: 390 MYKTDGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVTKYSKKMVLFDEGCLSFP 569
           MYKTDGIGLSAPQVG+NVQLMVFN  GERGEGEEIVLVNPRV++YS++++ ++EGCLSFP
Sbjct: 122 MYKTDGIGLSAPQVGMNVQLMVFNAAGERGEGEEIVLVNPRVSRYSRRIIPYEEGCLSFP 181

Query: 570 GIYADVKRPESVKIDARDVTGVRFNFSLSGLPARVFQHEFDHLQGVLFFERMTEDVLESV 749
            I+ DVKRPESVK+DA+D+ G RF  SLS LPARVFQHEFDHLQGVLFF++MT++VL+++
Sbjct: 182 MIHGDVKRPESVKVDAQDINGTRFEISLSALPARVFQHEFDHLQGVLFFDKMTDEVLDTI 241

Query: 750 RPQLQALEKKYEDKTGQTSPERVDNIKLKKVPVGFGK 860
           R +L ALEKKYED+TG  +PE ++  K+KK  VGFGK
Sbjct: 242 REKLVALEKKYEDRTGLPTPESINTRKIKKAAVGFGK 278