BLASTX nr result

ID: Bupleurum21_contig00006564 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00006564
         (364 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003624658.1| Protein vip1 [Medicago truncatula] gi|871626...   130   1e-28
ref|XP_002265170.2| PREDICTED: uncharacterized protein LOC100246...   130   1e-28
gb|AFK38631.1| unknown [Medicago truncatula]                          128   4e-28
gb|ACJ84770.1| unknown [Medicago truncatula]                          128   4e-28
ref|XP_003624657.1| Protein vip1 [Medicago truncatula] gi|355499...   128   5e-28

>ref|XP_003624658.1| Protein vip1 [Medicago truncatula] gi|87162638|gb|ABD28433.1|
           RNA-binding region RNP-1 (RNA recognition motif)
           [Medicago truncatula] gi|355499673|gb|AES80876.1|
           Protein vip1 [Medicago truncatula]
          Length = 265

 Score =  130 bits (327), Expect = 1e-28
 Identities = 70/107 (65%), Positives = 83/107 (77%), Gaps = 1/107 (0%)
 Frame = +2

Query: 47  MQTRTVQVGHVSDLATEREIHEFFSFSGQIDHIEI-RSDLRPRTAFVTFKDAQALEIALL 223
           MQTRTVQV  +SDLATEREIHEFFSFSG+I+HI+I R   +P+TAFVTFKD +ALEIALL
Sbjct: 1   MQTRTVQVKQLSDLATEREIHEFFSFSGEIEHIQIVREYGKPKTAFVTFKDPRALEIALL 60

Query: 224 LSGATIVDQIVSITPAENYVPQPVAQGVNIQGNDLTLVQDDASPQTE 364
           LSGATIVDQIVSI+P ENYV     Q V +    + +  +DA+  TE
Sbjct: 61  LSGATIVDQIVSISPVENYVANRETQEVGVVEYAINIAPEDAASNTE 107


>ref|XP_002265170.2| PREDICTED: uncharacterized protein LOC100246079 [Vitis vinifera]
           gi|296089289|emb|CBI39061.3| unnamed protein product
           [Vitis vinifera]
          Length = 268

 Score =  130 bits (327), Expect = 1e-28
 Identities = 74/108 (68%), Positives = 84/108 (77%), Gaps = 2/108 (1%)
 Frame = +2

Query: 47  MQTRTVQVGHVSDLATEREIHEFFSFSGQIDHIEIRSDL-RPRTAFVTFKDAQALEIALL 223
           MQTRTVQVGHVSDLA EREIHEFFSFSG I+H+EI  D  + RTAFVTFKD +ALEIALL
Sbjct: 1   MQTRTVQVGHVSDLAGEREIHEFFSFSGDIEHVEILRDSGQLRTAFVTFKDPKALEIALL 60

Query: 224 LSGATIVDQIVSITPAENYVPQPVAQGVNIQGNDLTLVQD-DASPQTE 364
           LSGATIVDQ+V+ITP ENYVP    + V+I  + +  V D D SP  E
Sbjct: 61  LSGATIVDQVVTITPVENYVP-TAEREVSITDDAVCQVPDGDVSPNAE 107


>gb|AFK38631.1| unknown [Medicago truncatula]
          Length = 265

 Score =  128 bits (322), Expect = 4e-28
 Identities = 69/107 (64%), Positives = 82/107 (76%), Gaps = 1/107 (0%)
 Frame = +2

Query: 47  MQTRTVQVGHVSDLATEREIHEFFSFSGQIDHIEI-RSDLRPRTAFVTFKDAQALEIALL 223
           MQTRTVQV  +SDLATEREIHEFFSFSG+I+HI+I R   +P+TAFVTFKD +ALEIALL
Sbjct: 1   MQTRTVQVKQLSDLATEREIHEFFSFSGEIEHIQIVREYGKPKTAFVTFKDPRALEIALL 60

Query: 224 LSGATIVDQIVSITPAENYVPQPVAQGVNIQGNDLTLVQDDASPQTE 364
           LSGA IVDQIVSI+P ENYV     Q V +    + +  +DA+  TE
Sbjct: 61  LSGAAIVDQIVSISPVENYVANRETQEVGVVEYAINIAPEDAASNTE 107


>gb|ACJ84770.1| unknown [Medicago truncatula]
          Length = 217

 Score =  128 bits (322), Expect = 4e-28
 Identities = 69/107 (64%), Positives = 82/107 (76%), Gaps = 1/107 (0%)
 Frame = +2

Query: 47  MQTRTVQVGHVSDLATEREIHEFFSFSGQIDHIEI-RSDLRPRTAFVTFKDAQALEIALL 223
           MQTRTVQV  +SDLATEREIHEFFSFSG+I+HI+I R   +P+TAFVTFKD +ALEIALL
Sbjct: 1   MQTRTVQVKQLSDLATEREIHEFFSFSGEIEHIQIVREYGKPKTAFVTFKDPRALEIALL 60

Query: 224 LSGATIVDQIVSITPAENYVPQPVAQGVNIQGNDLTLVQDDASPQTE 364
           LSGA IVDQIVSI+P ENYV     Q V +    + +  +DA+  TE
Sbjct: 61  LSGAAIVDQIVSISPVENYVANRETQEVGVVEYAINIAPEDAASNTE 107


>ref|XP_003624657.1| Protein vip1 [Medicago truncatula] gi|355499672|gb|AES80875.1|
           Protein vip1 [Medicago truncatula]
          Length = 267

 Score =  128 bits (321), Expect = 5e-28
 Identities = 68/108 (62%), Positives = 84/108 (77%), Gaps = 1/108 (0%)
 Frame = +2

Query: 44  EMQTRTVQVGHVSDLATEREIHEFFSFSGQIDHIEI-RSDLRPRTAFVTFKDAQALEIAL 220
           +++TRTVQV  +SDLATEREIHEFFSFSG+I+HI+I R   +P+TAFVTFKD +ALEIAL
Sbjct: 2   QVKTRTVQVKQLSDLATEREIHEFFSFSGEIEHIQIVREYGKPKTAFVTFKDPRALEIAL 61

Query: 221 LLSGATIVDQIVSITPAENYVPQPVAQGVNIQGNDLTLVQDDASPQTE 364
           LLSGATIVDQIVSI+P ENYV     Q V +    + +  +DA+  TE
Sbjct: 62  LLSGATIVDQIVSISPVENYVANRETQEVGVVEYAINIAPEDAASNTE 109


Top