BLASTX nr result
ID: Bupleurum21_contig00005960
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00005960
(1170 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002268394.1| PREDICTED: cyclin-D1-1 [Vitis vinifera] gi|2... 236 e-101
ref|XP_003519458.1| PREDICTED: cyclin-D1-1-like [Glycine max] 231 4e-98
ref|XP_004143797.1| PREDICTED: cyclin-D1-1-like [Cucumis sativus... 234 9e-98
ref|XP_003517843.1| PREDICTED: cyclin-D1-1-like [Glycine max] 228 4e-97
gb|AEV41133.1| D1-type cyclin [Populus x canadensis] 231 3e-96
>ref|XP_002268394.1| PREDICTED: cyclin-D1-1 [Vitis vinifera]
gi|296086502|emb|CBI32091.3| unnamed protein product
[Vitis vinifera]
Length = 324
Score = 236 bits (603), Expect(2) = e-101
Identities = 117/149 (78%), Positives = 131/149 (87%)
Frame = +1
Query: 1 DIEESIARFIVDESKFVPGIDYAEKIQSKSVDSSARQASVAWILKVQRYYGFQPLTAFLS 180
DIEESIA FI DE FVPG DY + +S S+D+SAR+ SVAWILKVQ Y+GFQPLTA+LS
Sbjct: 37 DIEESIAGFIEDERNFVPGFDYLARFRSHSLDASAREESVAWILKVQAYHGFQPLTAYLS 96
Query: 181 VNYMDRFLYCHRLPEHTNGWPLQLLSTACLSLAAKMEEPMVPSLLDLQVEGAKYIFEPRT 360
VNY+DRFLY RLP+ TNGWPLQLLS ACLSLAAKMEEP+VPSLLDLQVEGAK+IFE +T
Sbjct: 97 VNYLDRFLYSRRLPQ-TNGWPLQLLSVACLSLAAKMEEPLVPSLLDLQVEGAKFIFESKT 155
Query: 361 IRRMEFLVLGVLDWRLRSITPFTFLSFFA 447
IRRME LVLGVLDWRLRSITPF+F+ FFA
Sbjct: 156 IRRMELLVLGVLDWRLRSITPFSFIGFFA 184
Score = 158 bits (400), Expect(2) = e-101
Identities = 83/142 (58%), Positives = 95/142 (66%)
Frame = +2
Query: 515 YKLDTAGTFTGFLISRATDIILLNMQEASFVEYWPSCIAAATILCAANDIPNFSLISAGD 694
YKLD++G+ GFLISRAT IIL N+QEASF+EYWPSCIAAA ILCAAN+IP SL+
Sbjct: 185 YKLDSSGSVIGFLISRATQIILSNIQEASFLEYWPSCIAAAAILCAANEIPKLSLVDPER 244
Query: 695 AESWCEGLQKESIISCYRLVQEIGVVTRLRKRSKALPQIRVMTRAXXXXXXXXXXXXXXX 874
AESWC+GL KE IISCY+L+QEI V RK K LPQ+RV RA
Sbjct: 245 AESWCDGLSKEKIISCYQLMQEITVDNNRRKPPKLLPQLRVTIRA--RVRSSGSSSSSSS 302
Query: 875 XXXXRRRLNNSLWVDDDMETSD 940
RR+LNN LWVDDD D
Sbjct: 303 SSYKRRKLNNCLWVDDDKGNGD 324
>ref|XP_003519458.1| PREDICTED: cyclin-D1-1-like [Glycine max]
Length = 339
Score = 231 bits (590), Expect(2) = 4e-98
Identities = 113/146 (77%), Positives = 128/146 (87%)
Frame = +1
Query: 10 ESIARFIVDESKFVPGIDYAEKIQSKSVDSSARQASVAWILKVQRYYGFQPLTAFLSVNY 189
ESIA FI DE FVPG +Y + QS+S+D+SAR+ SVAWILKVQ YY FQPLTA+LSVNY
Sbjct: 48 ESIAGFIEDERNFVPGFEYLNRFQSRSLDASAREESVAWILKVQAYYAFQPLTAYLSVNY 107
Query: 190 MDRFLYCHRLPEHTNGWPLQLLSTACLSLAAKMEEPMVPSLLDLQVEGAKYIFEPRTIRR 369
+DRFL +LP+ TNGWPLQLLS ACLSLAAKMEEP+VPSLLDLQVEGAKY+FEP+TIRR
Sbjct: 108 LDRFLNSRQLPQ-TNGWPLQLLSVACLSLAAKMEEPLVPSLLDLQVEGAKYVFEPKTIRR 166
Query: 370 MEFLVLGVLDWRLRSITPFTFLSFFA 447
ME LVLGVLDWRLRS+TPF+FL FFA
Sbjct: 167 MELLVLGVLDWRLRSVTPFSFLDFFA 192
Score = 154 bits (389), Expect(2) = 4e-98
Identities = 80/145 (55%), Positives = 98/145 (67%), Gaps = 5/145 (3%)
Frame = +2
Query: 518 KLDTAGTFTGFLISRATDIILLNMQEASFVEYWPSCIAAATILCAANDIPNFSLISAGDA 697
KLD++GTFTGFLISRAT IIL N+QEASF+ YWPSCIAAA+IL AAN+IPN+S + A
Sbjct: 194 KLDSSGTFTGFLISRATQIILSNIQEASFLAYWPSCIAAASILHAANEIPNWSFVRPEHA 253
Query: 698 ESWCEGLQKESIISCYRLVQEIGVVTRLRKRSKALPQIRVMTR-----AXXXXXXXXXXX 862
ESWCEGL+KE +I CY+L+QE+ + RK K LPQ+RV +R +
Sbjct: 254 ESWCEGLRKEKVIGCYQLMQELVINNNRRKPPKVLPQLRVTSRPIMRSSVSSFSASSSFS 313
Query: 863 XXXXXXXXRRRLNNSLWVDDDMETS 937
RR+LNNSLWVDDD S
Sbjct: 314 PSSSLSCKRRKLNNSLWVDDDKGNS 338
>ref|XP_004143797.1| PREDICTED: cyclin-D1-1-like [Cucumis sativus]
gi|449527605|ref|XP_004170800.1| PREDICTED:
cyclin-D1-1-like [Cucumis sativus]
Length = 335
Score = 234 bits (596), Expect(2) = 9e-98
Identities = 115/147 (78%), Positives = 128/147 (87%)
Frame = +1
Query: 7 EESIARFIVDESKFVPGIDYAEKIQSKSVDSSARQASVAWILKVQRYYGFQPLTAFLSVN 186
E+SIA FI DE FVPGIDY + QS+S+DSSAR SVAWILKVQ YYGFQPLTA+LSVN
Sbjct: 43 EDSIASFIEDERHFVPGIDYLSRFQSQSLDSSARADSVAWILKVQAYYGFQPLTAYLSVN 102
Query: 187 YMDRFLYCHRLPEHTNGWPLQLLSTACLSLAAKMEEPMVPSLLDLQVEGAKYIFEPRTIR 366
Y+DRFLY RLPE TNGWPLQLLS ACLSLAAKMEEP+VPS +DLQ+EGAKYIFEPRTIR
Sbjct: 103 YLDRFLYSRRLPE-TNGWPLQLLSVACLSLAAKMEEPIVPSFVDLQIEGAKYIFEPRTIR 161
Query: 367 RMEFLVLGVLDWRLRSITPFTFLSFFA 447
RME LVL L+WRLRS+TPF+F+ FFA
Sbjct: 162 RMELLVLTTLNWRLRSVTPFSFIGFFA 188
Score = 150 bits (380), Expect(2) = 9e-98
Identities = 70/141 (49%), Positives = 95/141 (67%)
Frame = +2
Query: 515 YKLDTAGTFTGFLISRATDIILLNMQEASFVEYWPSCIAAATILCAANDIPNFSLISAGD 694
YK+D GTF+ FL SR+T+IIL N ++A+F+EYWPSCIAAA +LCAAN+IPN +L++
Sbjct: 189 YKVDPTGTFSSFLNSRSTEIILSNTRDATFLEYWPSCIAAAALLCAANEIPNLTLLNPEH 248
Query: 695 AESWCEGLQKESIISCYRLVQEIGVVTRLRKRSKALPQIRVMTRAXXXXXXXXXXXXXXX 874
A+SWC GL K+ I+ CYRL+Q + + +R RK K +PQ+RV RA
Sbjct: 249 AQSWCNGLSKDKIVGCYRLMQPLTLESRRRKAPKVIPQLRVRVRAGLRYSDSSSSSSSSR 308
Query: 875 XXXXRRRLNNSLWVDDDMETS 937
RR+LNN +WV+DD E S
Sbjct: 309 LPFKRRKLNNCVWVEDDKENS 329
>ref|XP_003517843.1| PREDICTED: cyclin-D1-1-like [Glycine max]
Length = 339
Score = 228 bits (581), Expect(2) = 4e-97
Identities = 110/146 (75%), Positives = 125/146 (85%)
Frame = +1
Query: 10 ESIARFIVDESKFVPGIDYAEKIQSKSVDSSARQASVAWILKVQRYYGFQPLTAFLSVNY 189
ESIA F+ DE FVPG +Y + QS+S+D+SAR+ SVAWILKVQ YY FQP+TA+LSVNY
Sbjct: 46 ESIAGFMEDERNFVPGFEYLNRFQSRSLDASAREESVAWILKVQAYYAFQPVTAYLSVNY 105
Query: 190 MDRFLYCHRLPEHTNGWPLQLLSTACLSLAAKMEEPMVPSLLDLQVEGAKYIFEPRTIRR 369
+DRFL LP TNGWPLQLLS ACLSLAAKMEE +VPSLLDLQVEGAKY+FEP+TIRR
Sbjct: 106 LDRFLNSRPLPPKTNGWPLQLLSVACLSLAAKMEESLVPSLLDLQVEGAKYVFEPKTIRR 165
Query: 370 MEFLVLGVLDWRLRSITPFTFLSFFA 447
ME LVLGVLDWRLRS+TPF+FL FFA
Sbjct: 166 MELLVLGVLDWRLRSVTPFSFLDFFA 191
Score = 154 bits (389), Expect(2) = 4e-97
Identities = 82/146 (56%), Positives = 96/146 (65%), Gaps = 6/146 (4%)
Frame = +2
Query: 518 KLDTAGTFTGFLISRATDIILLNMQEASFVEYWPSCIAAATILCAANDIPNFSLISAGDA 697
KLD+ GTFTGFLISRAT IIL N+QEASF+ YWPSCIAAA IL AAN+IPN+SL+ A
Sbjct: 193 KLDSTGTFTGFLISRATQIILSNIQEASFLAYWPSCIAAAAILHAANEIPNWSLVRPEHA 252
Query: 698 ESWCEGLQKESIISCYRLVQEIGVVTRLRKRSKALPQIRV------MTRAXXXXXXXXXX 859
ESWCEGL+KE II CY+L+QE+ + RK K LPQ+RV M +
Sbjct: 253 ESWCEGLRKEKIIGCYQLMQELVIDNNQRKPPKVLPQLRVTISRPIMRSSVSSFLASSSS 312
Query: 860 XXXXXXXXXRRRLNNSLWVDDDMETS 937
RR+LNNSLWVDDD S
Sbjct: 313 PSSSSLSCRRRKLNNSLWVDDDKGNS 338
>gb|AEV41133.1| D1-type cyclin [Populus x canadensis]
Length = 327
Score = 231 bits (589), Expect(2) = 3e-96
Identities = 116/147 (78%), Positives = 127/147 (86%)
Frame = +1
Query: 7 EESIARFIVDESKFVPGIDYAEKIQSKSVDSSARQASVAWILKVQRYYGFQPLTAFLSVN 186
E SIA FI DE FVPG DY + QS+S+D+SAR+ SVAWILKVQ YGFQPLTA+LSVN
Sbjct: 39 ESSIAGFIEDERNFVPGYDYFSRFQSQSLDASAREQSVAWILKVQACYGFQPLTAYLSVN 98
Query: 187 YMDRFLYCHRLPEHTNGWPLQLLSTACLSLAAKMEEPMVPSLLDLQVEGAKYIFEPRTIR 366
Y+DRFLY RL + T+GWPLQLLS ACLSLAAKMEEP+VPSLLDLQVEGAKYIFEPRTIR
Sbjct: 99 YLDRFLYSRRL-QQTDGWPLQLLSVACLSLAAKMEEPLVPSLLDLQVEGAKYIFEPRTIR 157
Query: 367 RMEFLVLGVLDWRLRSITPFTFLSFFA 447
RME LVLGVLDWRLRSITPF+F FFA
Sbjct: 158 RMELLVLGVLDWRLRSITPFSFTGFFA 184
Score = 148 bits (374), Expect(2) = 3e-96
Identities = 77/142 (54%), Positives = 97/142 (68%), Gaps = 1/142 (0%)
Frame = +2
Query: 518 KLDTAGTFTGFLISRATDIILLNMQEASFVEYWPSCIAAATILCAANDIPNFSLISAGDA 697
KLD AG +TGFLISRAT+IIL N++EASF+EY PS IAAA ILCAANDIPN SL++ A
Sbjct: 186 KLDPAGAYTGFLISRATEIILSNIKEASFLEYRPSSIAAAAILCAANDIPNLSLVNPEHA 245
Query: 698 ESWCEGLQKESIISCYRLVQEIGVVTRLRKRSKA-LPQIRVMTRAXXXXXXXXXXXXXXX 874
ESWC+GL K+ I+SCYRL+Q++ + RK +K LP++RV RA
Sbjct: 246 ESWCDGLSKDKIVSCYRLMQDLVLDDSRRKSTKVLLPRLRVTIRARMRSSGSDSSSSSSS 305
Query: 875 XXXXRRRLNNSLWVDDDMETSD 940
+R+LNN LWVDDD S+
Sbjct: 306 SSYKKRKLNNCLWVDDDKGNSE 327