BLASTX nr result
ID: Bupleurum21_contig00005753
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00005753
(771 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002283748.1| PREDICTED: polypyrimidine tract-binding prot... 216 6e-54
gb|ABK95931.1| unknown [Populus trichocarpa] 209 4e-52
ref|XP_003552538.1| PREDICTED: polypyrimidine tract-binding prot... 206 6e-51
ref|XP_003552536.1| PREDICTED: polypyrimidine tract-binding prot... 206 6e-51
ref|XP_003534438.1| PREDICTED: polypyrimidine tract-binding prot... 206 6e-51
>ref|XP_002283748.1| PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform 1
[Vitis vinifera] gi|296082938|emb|CBI22239.3| unnamed
protein product [Vitis vinifera]
Length = 449
Score = 216 bits (549), Expect = 6e-54
Identities = 115/149 (77%), Positives = 117/149 (78%)
Frame = +2
Query: 323 VRGKHVYIQYSNRHEIVNNKGPGDVPGNVLLVTIEGVEAGDVSXXXXXXXXXXXXXXXXX 502
VRGK VYIQYSNRHEIVNNK PGDVPGNVLLVTIEGVEAGDVS
Sbjct: 83 VRGKTVYIQYSNRHEIVNNKSPGDVPGNVLLVTIEGVEAGDVSIDVIHL----------- 131
Query: 503 XXXXXXXXXXXXVFSAFGFVHKIATFEKAAGFQALIQFTDAETASAAREALDGRSIPRYL 682
VFSAFGFVHKIATFEKAAGFQALIQFTDAETAS+AR ALDGRSIPRYL
Sbjct: 132 ------------VFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYL 179
Query: 683 LPEHVGSCYLRISYSAHTDLNIKFQSHRS 769
LPEHVGSC+LRISYSAHTDLNIKFQSHRS
Sbjct: 180 LPEHVGSCHLRISYSAHTDLNIKFQSHRS 208
Score = 89.7 bits (221), Expect = 6e-16
Identities = 40/41 (97%), Positives = 40/41 (97%)
Frame = +1
Query: 37 MSTSGQPQFRYTQTPSKVLHLRNLPWECIEEELVELCKPFG 159
MSTSGQPQFRYTQTPSKVLHLRNLPWEC EEELVELCKPFG
Sbjct: 1 MSTSGQPQFRYTQTPSKVLHLRNLPWECTEEELVELCKPFG 41
Score = 77.0 bits (188), Expect = 4e-12
Identities = 43/77 (55%), Positives = 49/77 (63%)
Frame = +2
Query: 539 VFSAFGFVHKIATFEKAAGFQALIQFTDAETASAAREALDGRSIPRYLLPEHVGSCYLRI 718
VFSAFG V KIA FEK G QALIQ+ D TA+ A+EAL+G I G C L +
Sbjct: 264 VFSAFGTVQKIAIFEKNGGMQALIQYPDVTTAAVAKEALEGHCI------YDGGYCKLHL 317
Query: 719 SYSAHTDLNIKFQSHRS 769
SYS HTDLN+K S RS
Sbjct: 318 SYSRHTDLNVKAHSDRS 334
>gb|ABK95931.1| unknown [Populus trichocarpa]
Length = 473
Score = 209 bits (533), Expect = 4e-52
Identities = 111/149 (74%), Positives = 116/149 (77%)
Frame = +2
Query: 323 VRGKHVYIQYSNRHEIVNNKGPGDVPGNVLLVTIEGVEAGDVSXXXXXXXXXXXXXXXXX 502
VRGK VYIQYSNRHEIVNNK PGD PGNVLLVTIEGVEAGDVS
Sbjct: 83 VRGKTVYIQYSNRHEIVNNKSPGDNPGNVLLVTIEGVEAGDVSIDVIHL----------- 131
Query: 503 XXXXXXXXXXXXVFSAFGFVHKIATFEKAAGFQALIQFTDAETASAAREALDGRSIPRYL 682
VFSAFG++HKIATFEKAAGFQALIQFTD+ETAS+AR ALDGRSIPRYL
Sbjct: 132 ------------VFSAFGYLHKIATFEKAAGFQALIQFTDSETASSARNALDGRSIPRYL 179
Query: 683 LPEHVGSCYLRISYSAHTDLNIKFQSHRS 769
LPEHVGSC+LRISYSAHTDLNIKFQSHRS
Sbjct: 180 LPEHVGSCHLRISYSAHTDLNIKFQSHRS 208
Score = 89.4 bits (220), Expect = 8e-16
Identities = 39/41 (95%), Positives = 40/41 (97%)
Frame = +1
Query: 37 MSTSGQPQFRYTQTPSKVLHLRNLPWECIEEELVELCKPFG 159
MSTSGQPQFRYTQTPSKVLHLRNLPWEC EEEL+ELCKPFG
Sbjct: 1 MSTSGQPQFRYTQTPSKVLHLRNLPWECTEEELIELCKPFG 41
Score = 73.2 bits (178), Expect = 6e-11
Identities = 41/77 (53%), Positives = 48/77 (62%)
Frame = +2
Query: 539 VFSAFGFVHKIATFEKAAGFQALIQFTDAETASAAREALDGRSIPRYLLPEHVGSCYLRI 718
VFSAFG V KIA FEK G QALIQ+ D TA+ A+E L+G I G C L +
Sbjct: 264 VFSAFGTVQKIAIFEKNGGTQALIQYPDVATAAVAKETLEGHCI------YDGGYCKLHL 317
Query: 719 SYSAHTDLNIKFQSHRS 769
SYS HTDLN+K S +S
Sbjct: 318 SYSRHTDLNVKAYSDKS 334
>ref|XP_003552538.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
isoform 3 [Glycine max]
Length = 304
Score = 206 bits (523), Expect = 6e-51
Identities = 110/149 (73%), Positives = 114/149 (76%)
Frame = +2
Query: 323 VRGKHVYIQYSNRHEIVNNKGPGDVPGNVLLVTIEGVEAGDVSXXXXXXXXXXXXXXXXX 502
VRGK VYIQYSNRHEIVNNK PGD+PGNVLLVTIEGVEAGDVS
Sbjct: 83 VRGKTVYIQYSNRHEIVNNKSPGDIPGNVLLVTIEGVEAGDVSIDVIHL----------- 131
Query: 503 XXXXXXXXXXXXVFSAFGFVHKIATFEKAAGFQALIQFTDAETASAAREALDGRSIPRYL 682
VFSAFGFVHKIATFEK AGFQALIQFTDAETAS+AR+ALDGRSIPRYL
Sbjct: 132 ------------VFSAFGFVHKIATFEKTAGFQALIQFTDAETASSARDALDGRSIPRYL 179
Query: 683 LPEHVGSCYLRISYSAHTDLNIKFQSHRS 769
LP HVGSC LRISYSAH DLNIKFQS+RS
Sbjct: 180 LPAHVGSCNLRISYSAHKDLNIKFQSNRS 208
Score = 79.7 bits (195), Expect = 6e-13
Identities = 36/41 (87%), Positives = 37/41 (90%)
Frame = +1
Query: 37 MSTSGQPQFRYTQTPSKVLHLRNLPWECIEEELVELCKPFG 159
MSTS Q QFRYTQTPSKVLHLRNLPWEC EEEL ELC+PFG
Sbjct: 1 MSTSSQHQFRYTQTPSKVLHLRNLPWECSEEELRELCRPFG 41
>ref|XP_003552536.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
isoform 1 [Glycine max]
Length = 496
Score = 206 bits (523), Expect = 6e-51
Identities = 110/149 (73%), Positives = 114/149 (76%)
Frame = +2
Query: 323 VRGKHVYIQYSNRHEIVNNKGPGDVPGNVLLVTIEGVEAGDVSXXXXXXXXXXXXXXXXX 502
VRGK VYIQYSNRHEIVNNK PGD+PGNVLLVTIEGVEAGDVS
Sbjct: 83 VRGKTVYIQYSNRHEIVNNKSPGDIPGNVLLVTIEGVEAGDVSIDVIHL----------- 131
Query: 503 XXXXXXXXXXXXVFSAFGFVHKIATFEKAAGFQALIQFTDAETASAAREALDGRSIPRYL 682
VFSAFGFVHKIATFEK AGFQALIQFTDAETAS+AR+ALDGRSIPRYL
Sbjct: 132 ------------VFSAFGFVHKIATFEKTAGFQALIQFTDAETASSARDALDGRSIPRYL 179
Query: 683 LPEHVGSCYLRISYSAHTDLNIKFQSHRS 769
LP HVGSC LRISYSAH DLNIKFQS+RS
Sbjct: 180 LPAHVGSCNLRISYSAHKDLNIKFQSNRS 208
Score = 79.7 bits (195), Expect = 6e-13
Identities = 36/41 (87%), Positives = 37/41 (90%)
Frame = +1
Query: 37 MSTSGQPQFRYTQTPSKVLHLRNLPWECIEEELVELCKPFG 159
MSTS Q QFRYTQTPSKVLHLRNLPWEC EEEL ELC+PFG
Sbjct: 1 MSTSSQHQFRYTQTPSKVLHLRNLPWECSEEELRELCRPFG 41
Score = 73.6 bits (179), Expect = 5e-11
Identities = 44/77 (57%), Positives = 49/77 (63%)
Frame = +2
Query: 539 VFSAFGFVHKIATFEKAAGFQALIQFTDAETASAAREALDGRSIPRYLLPEHVGSCYLRI 718
VFSAFG V KIA FEK QALIQ+ D TASAAREAL+G I G C L +
Sbjct: 264 VFSAFGTVQKIAIFEKNGQTQALIQYPDIITASAAREALEGHCI------YDGGYCKLHL 317
Query: 719 SYSAHTDLNIKFQSHRS 769
SYS HTDLN+K S +S
Sbjct: 318 SYSRHTDLNVKAFSDKS 334
>ref|XP_003534438.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
isoform 1 [Glycine max]
Length = 496
Score = 206 bits (523), Expect = 6e-51
Identities = 110/149 (73%), Positives = 114/149 (76%)
Frame = +2
Query: 323 VRGKHVYIQYSNRHEIVNNKGPGDVPGNVLLVTIEGVEAGDVSXXXXXXXXXXXXXXXXX 502
VRGK VYIQYSNRHEIVNNK PGD+PGNVLLVTIEGVEAGDVS
Sbjct: 83 VRGKTVYIQYSNRHEIVNNKSPGDIPGNVLLVTIEGVEAGDVSIDVIHL----------- 131
Query: 503 XXXXXXXXXXXXVFSAFGFVHKIATFEKAAGFQALIQFTDAETASAAREALDGRSIPRYL 682
VFSAFGFVHKIATFEK AGFQALIQFTDAETAS+AR+ALDGRSIPRYL
Sbjct: 132 ------------VFSAFGFVHKIATFEKTAGFQALIQFTDAETASSARDALDGRSIPRYL 179
Query: 683 LPEHVGSCYLRISYSAHTDLNIKFQSHRS 769
LP HVGSC LRISYSAH DLNIKFQS+RS
Sbjct: 180 LPAHVGSCNLRISYSAHKDLNIKFQSNRS 208
Score = 80.9 bits (198), Expect = 3e-13
Identities = 37/41 (90%), Positives = 37/41 (90%)
Frame = +1
Query: 37 MSTSGQPQFRYTQTPSKVLHLRNLPWECIEEELVELCKPFG 159
MSTS Q QFRYTQTPSKVLHLRNLPWEC EEEL ELCKPFG
Sbjct: 1 MSTSNQHQFRYTQTPSKVLHLRNLPWECSEEELRELCKPFG 41
Score = 73.6 bits (179), Expect = 5e-11
Identities = 44/77 (57%), Positives = 49/77 (63%)
Frame = +2
Query: 539 VFSAFGFVHKIATFEKAAGFQALIQFTDAETASAAREALDGRSIPRYLLPEHVGSCYLRI 718
VFSAFG V KIA FEK QALIQ+ D TASAAREAL+G I G C L +
Sbjct: 264 VFSAFGTVQKIAIFEKNGQTQALIQYPDIITASAAREALEGHCI------YDGGYCKLHL 317
Query: 719 SYSAHTDLNIKFQSHRS 769
SYS HTDLN+K S +S
Sbjct: 318 SYSRHTDLNVKAFSDKS 334