BLASTX nr result
ID: Bupleurum21_contig00005600
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00005600
(468 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195043.1| pentatricopeptide repeat-containing protein [Ar... 75 3e-28
ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containi... 69 3e-27
emb|CBI20738.3| unnamed protein product [Vitis vinifera] 69 3e-27
ref|XP_002516159.1| pentatricopeptide repeat-containing protein,... 71 2e-26
emb|CAN66439.1| hypothetical protein VITISV_035236 [Vitis vinifera] 71 6e-25
>ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At4g33170 gi|4455331|emb|CAB36791.1| putative protein
[Arabidopsis thaliana] gi|7270265|emb|CAB80034.1|
putative protein [Arabidopsis thaliana]
gi|332660786|gb|AEE86186.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 990
Score = 75.1 bits (183), Expect(3) = 3e-28
Identities = 35/60 (58%), Positives = 44/60 (73%)
Frame = +2
Query: 2 TSSSSSPWFSLIRTAVSMADLRLGKSIHALIITYGQTANRFLTNNHISMYSKCGSLKYAQ 181
+SSSSS WF +R A++ +DL LGK HA I+T+ + RFL NN ISMYSKCGSL YA+
Sbjct: 35 SSSSSSQWFGFLRNAITSSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYAR 94
Score = 54.7 bits (130), Expect(3) = 3e-28
Identities = 24/35 (68%), Positives = 28/35 (80%)
Frame = +3
Query: 363 HLWVSEMVHGYSVKIGLEFDPFVAGALVNIYCKFG 467
++W SE HGY+ KIGL+ D FVAGALVNIY KFG
Sbjct: 160 YVWASESFHGYACKIGLDGDEFVAGALVNIYLKFG 194
Score = 40.4 bits (93), Expect(3) = 3e-28
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +1
Query: 181 AHHVFDTTPEIDIVTWNSILAAYALCNDFGNYNLKRVFVV 300
A VFD P+ D+V+WNSILAAYA ++ N+++ F++
Sbjct: 93 ARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLL 132
>ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
[Vitis vinifera]
Length = 1580
Score = 69.3 bits (168), Expect(3) = 3e-27
Identities = 33/58 (56%), Positives = 42/58 (72%)
Frame = +2
Query: 8 SSSSPWFSLIRTAVSMADLRLGKSIHALIITYGQTANRFLTNNHISMYSKCGSLKYAQ 181
SSSS WFSL+RTA+S +L LGK HA I+ G + FL+NN ++MYSKCGSL A+
Sbjct: 619 SSSSQWFSLLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSAR 676
Score = 54.7 bits (130), Expect(3) = 3e-27
Identities = 24/34 (70%), Positives = 29/34 (85%)
Frame = +3
Query: 366 LWVSEMVHGYSVKIGLEFDPFVAGALVNIYCKFG 467
LW +E VHGY++KIGLE+D FV+GALVNIY K G
Sbjct: 743 LWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCG 776
Score = 43.1 bits (100), Expect(3) = 3e-27
Identities = 20/33 (60%), Positives = 23/33 (69%)
Frame = +1
Query: 181 AHHVFDTTPEIDIVTWNSILAAYALCNDFGNYN 279
A VFDTTPE D+VTWN+IL AYA D + N
Sbjct: 675 ARQVFDTTPERDLVTWNAILGAYAASVDSNDGN 707
>emb|CBI20738.3| unnamed protein product [Vitis vinifera]
Length = 865
Score = 69.3 bits (168), Expect(3) = 3e-27
Identities = 33/58 (56%), Positives = 42/58 (72%)
Frame = +2
Query: 8 SSSSPWFSLIRTAVSMADLRLGKSIHALIITYGQTANRFLTNNHISMYSKCGSLKYAQ 181
SSSS WFSL+RTA+S +L LGK HA I+ G + FL+NN ++MYSKCGSL A+
Sbjct: 75 SSSSQWFSLLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSAR 132
Score = 54.7 bits (130), Expect(3) = 3e-27
Identities = 24/34 (70%), Positives = 29/34 (85%)
Frame = +3
Query: 366 LWVSEMVHGYSVKIGLEFDPFVAGALVNIYCKFG 467
LW +E VHGY++KIGLE+D FV+GALVNIY K G
Sbjct: 199 LWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCG 232
Score = 43.1 bits (100), Expect(3) = 3e-27
Identities = 20/33 (60%), Positives = 23/33 (69%)
Frame = +1
Query: 181 AHHVFDTTPEIDIVTWNSILAAYALCNDFGNYN 279
A VFDTTPE D+VTWN+IL AYA D + N
Sbjct: 131 ARQVFDTTPERDLVTWNAILGAYAASVDSNDGN 163
>ref|XP_002516159.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223544645|gb|EEF46161.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 1439
Score = 71.2 bits (173), Expect(3) = 2e-26
Identities = 37/60 (61%), Positives = 46/60 (76%)
Frame = +2
Query: 2 TSSSSSPWFSLIRTAVSMADLRLGKSIHALIITYGQTANRFLTNNHISMYSKCGSLKYAQ 181
+S SSS FSL+R AVS ++L LGK IHA IIT G T++RFL NN I+MYSKCGS+ A+
Sbjct: 700 SSPSSSQCFSLLRAAVSTSNLHLGKCIHANIITSGLTSDRFLANNLITMYSKCGSVSSAR 759
Score = 54.7 bits (130), Expect(3) = 2e-26
Identities = 31/67 (46%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Frame = +3
Query: 285 EGFRSFELFLGRSSGLAASNRTPE------TWHLWVSEMVHGYSVKIGLEFDPFVAGALV 446
EGF F L R + P + ++ S+ VHGY+VKIGLE D FV+GALV
Sbjct: 793 EGFHIFRLLRERFVSTSKLTLAPMLKLCLLSGYVCASQAVHGYAVKIGLELDVFVSGALV 852
Query: 447 NIYCKFG 467
NIY KFG
Sbjct: 853 NIYSKFG 859
Score = 38.1 bits (87), Expect(3) = 2e-26
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = +1
Query: 172 VCPAHHVFDTTPEIDIVTWNSILAAYA 252
V A +FD TP+ D+VTWN++L+AYA
Sbjct: 755 VSSARQLFDRTPDRDLVTWNAVLSAYA 781
>emb|CAN66439.1| hypothetical protein VITISV_035236 [Vitis vinifera]
Length = 2076
Score = 70.9 bits (172), Expect(3) = 6e-25
Identities = 33/57 (57%), Positives = 42/57 (73%)
Frame = +2
Query: 8 SSSSPWFSLIRTAVSMADLRLGKSIHALIITYGQTANRFLTNNHISMYSKCGSLKYA 178
SSSS WFSL+RTA+S +L LGK HA I+ G + FLTNN +++YSKCGSL +A
Sbjct: 82 SSSSQWFSLLRTAISTHNLLLGKCTHARIVVSGTAGDHFLTNNLLTLYSKCGSLSFA 138
Score = 46.6 bits (109), Expect(3) = 6e-25
Identities = 20/34 (58%), Positives = 26/34 (76%)
Frame = +3
Query: 366 LWVSEMVHGYSVKIGLEFDPFVAGALVNIYCKFG 467
LW ++ VHGY++KIGL +D FV G L+NIY K G
Sbjct: 206 LWAAKGVHGYAIKIGLVWDVFVFGTLMNIYSKCG 239
Score = 41.6 bits (96), Expect(3) = 6e-25
Identities = 20/33 (60%), Positives = 23/33 (69%)
Frame = +1
Query: 181 AHHVFDTTPEIDIVTWNSILAAYALCNDFGNYN 279
A VFDTTPE D+VTWN+IL AYA D + N
Sbjct: 138 ACQVFDTTPERDLVTWNAILGAYASSVDSNDGN 170