BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00005505
         (487 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003551792.1| PREDICTED: DNA-directed RNA polymerase III s...   125   5e-27
emb|CBI36309.3| unnamed protein product [Vitis vinifera]              121   5e-26
ref|XP_002266428.1| PREDICTED: DNA-directed RNA polymerase III s...   120   1e-25
ref|XP_003635403.1| PREDICTED: DNA-directed RNA polymerase III s...   119   3e-25
ref|XP_002509507.1| DNA-directed RNA polymerase III subunit F, p...   119   3e-25

>ref|XP_003551792.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
           [Glycine max]
          Length = 239

 Score =  125 bits (313), Expect = 5e-27
 Identities = 71/148 (47%), Positives = 98/148 (66%), Gaps = 1/148 (0%)
 Frame = +3

Query: 45  ASLKRKRLVQCSLITQSLGEADRNVLNIIKGKKDLAIAVAEIRRVSKLPAKQVDKSIKTL 224
           +SLKRKR    +L+T SL + +R + N+I  KKD+ I   +++R + LP   V KS+K L
Sbjct: 8   SSLKRKRQ-DLALVTGSLTDGERVLYNLIHSKKDMGIWTGDMKRETNLPDSIVKKSLKLL 66

Query: 225 TTNQLIKEVHNIKHKG-KHYMAAEFEPPKELTGGQWYADGRLDQVFIDSLKEICLKIVRH 401
            +  LIKEV NI++KG KHYMAAEFEP KE+TGG WY  GRLD  FI+ +K++CLK +  
Sbjct: 67  QSKNLIKEVVNIQNKGRKHYMAAEFEPSKEITGGVWYNQGRLDTDFINLVKDVCLKYIFR 126

Query: 402 LKVVTAKGVHQLFIKHKEVMSQEVSYQQ 485
            KV T  GV + + +   V + EV+ QQ
Sbjct: 127 QKVATRDGVME-WSRKSGVFNVEVTTQQ 153


>emb|CBI36309.3| unnamed protein product [Vitis vinifera]
          Length = 493

 Score =  121 bits (304), Expect = 5e-26
 Identities = 69/159 (43%), Positives = 100/159 (62%), Gaps = 1/159 (0%)
 Frame = +3

Query: 12  VSIIRLKQDSMASLKRKRLVQCSLITQSLGEADRNVLNIIKGKKDLAIAVAEIRRVSKLP 191
           + I+ + +    SLKRKR    +  +Q L +A+R + ++I+ K+D+ I   +++R + LP
Sbjct: 86  ILILGMSRSQGLSLKRKR-PDTNAASQPLLDAERVLYDLIRSKEDMGIWTRDMKRETNLP 144

Query: 192 AKQVDKSIKTLTTNQLIKEVHNIKHKG-KHYMAAEFEPPKELTGGQWYADGRLDQVFIDS 368
              V KS+K L   +LIKEV NI+ KG KHYMA EFEP KELTGG WY +G LD  +I  
Sbjct: 145 DNVVTKSLKALQVKKLIKEVVNIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKI 204

Query: 369 LKEICLKIVRHLKVVTAKGVHQLFIKHKEVMSQEVSYQQ 485
           LKE C+K++  LKV TA+G+ +  I    + + E S QQ
Sbjct: 205 LKETCVKVLSKLKVATAEGISE-SINKTGLCATECSTQQ 242


>ref|XP_002266428.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Vitis
           vinifera]
          Length = 239

 Score =  120 bits (300), Expect = 1e-25
 Identities = 68/147 (46%), Positives = 95/147 (64%), Gaps = 1/147 (0%)
 Frame = +3

Query: 48  SLKRKRLVQCSLITQSLGEADRNVLNIIKGKKDLAIAVAEIRRVSKLPAKQVDKSIKTLT 227
           SLKRKR    +  +Q L +A+R + ++I+ K+D+ I   +++R + LP   V KS+K L 
Sbjct: 8   SLKRKR-PDTNAASQPLLDAERVLYDLIRSKEDMGIWTRDMKRETNLPDNVVTKSLKALQ 66

Query: 228 TNQLIKEVHNIKHKG-KHYMAAEFEPPKELTGGQWYADGRLDQVFIDSLKEICLKIVRHL 404
             +LIKEV NI+ KG KHYMA EFEP KELTGG WY +G LD  +I  LKE C+K++  L
Sbjct: 67  VKKLIKEVVNIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKETCVKVLSKL 126

Query: 405 KVVTAKGVHQLFIKHKEVMSQEVSYQQ 485
           KV TA+G+ +  I    + + E S QQ
Sbjct: 127 KVATAEGISE-SINKTGLCATECSTQQ 152


>ref|XP_003635403.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Vitis
           vinifera]
          Length = 239

 Score =  119 bits (298), Expect = 3e-25
 Identities = 67/148 (45%), Positives = 96/148 (64%), Gaps = 1/148 (0%)
 Frame = +3

Query: 45  ASLKRKRLVQCSLITQSLGEADRNVLNIIKGKKDLAIAVAEIRRVSKLPAKQVDKSIKTL 224
           +SLKRKR    +  +Q L +A+R + ++I+ K+D+ I   +++R + LP   V KS+K L
Sbjct: 7   SSLKRKR-PDTNTASQPLLDAERVLYDLIRSKEDMGIWTRDMKRETNLPDNVVTKSLKAL 65

Query: 225 TTNQLIKEVHNIKHKG-KHYMAAEFEPPKELTGGQWYADGRLDQVFIDSLKEICLKIVRH 401
              +LIKEV NI+ KG KHYMA EFEP KELTGG WY +G LD  +I  LKE C++++  
Sbjct: 66  QVKKLIKEVVNIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKETCVRVLSK 125

Query: 402 LKVVTAKGVHQLFIKHKEVMSQEVSYQQ 485
           LKV TA+G+ +  I    + + E S QQ
Sbjct: 126 LKVATAEGISE-SINKTGLCATECSTQQ 152


>ref|XP_002509507.1| DNA-directed RNA polymerase III subunit F, putative [Ricinus
           communis] gi|223549406|gb|EEF50894.1| DNA-directed RNA
           polymerase III subunit F, putative [Ricinus communis]
          Length = 236

 Score =  119 bits (297), Expect = 3e-25
 Identities = 68/147 (46%), Positives = 93/147 (63%), Gaps = 1/147 (0%)
 Frame = +3

Query: 48  SLKRKRLVQCSLITQSLGEADRNVLNIIKGKKDLAIAVAEIRRVSKLPAKQVDKSIKTLT 227
           +LKRK+  + S   QSL E +  + N+I  K+D+ I   +++R + LP   V+KS+K L 
Sbjct: 6   ALKRKQ-PESSSPAQSLTEHECTLYNVIWSKQDMGIWTRDMKRETNLPDNVVNKSLKVLQ 64

Query: 228 TNQLIKEVHNIKHKG-KHYMAAEFEPPKELTGGQWYADGRLDQVFIDSLKEICLKIVRHL 404
              LIKEV NI++KG KHYMA EFEP KE+TGG WY +G LD  FI  LKE+C K V  L
Sbjct: 65  AKNLIKEVVNIQNKGRKHYMATEFEPSKEITGGAWYVEGNLDTEFIKLLKEVCTKQVLKL 124

Query: 405 KVVTAKGVHQLFIKHKEVMSQEVSYQQ 485
           KV T +G+    IK   + + E++ QQ
Sbjct: 125 KVATLEGITD-SIKRSGIFNTELTKQQ 150