BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00005467
         (648 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative ...    75   1e-11
ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-...    72   7e-11
emb|CBI40014.3| unnamed protein product [Vitis vinifera]               71   2e-10
ref|XP_002325455.1| predicted protein [Populus trichocarpa] gi|2...    62   1e-07
ref|XP_002319746.1| predicted protein [Populus trichocarpa] gi|2...    57   3e-06

>ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
           gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor
           rpoD1, putative [Ricinus communis]
          Length = 569

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 49/129 (37%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
 Frame = +3

Query: 36  MSCLLPQFKCLPDSFSIHLKP---HHHTPSQPLKYREPIYFGVQCSATVTTALDMPSLEA 206
           MSCLLPQFKC PD+FSIH +    H    +Q  K REPIY+  QC  + T          
Sbjct: 2   MSCLLPQFKCQPDTFSIHFRANYFHFSNVTQSTKSREPIYYRAQCILSTT---------- 51

Query: 207 HSNQVVANKRWSPATATAVXXXXXXXXXXXXXXXNYAATNRPWTSFIDTDTATEATFGTA 386
                      SP+T+TAV               +  A N PWT          ATFG+ 
Sbjct: 52  -----------SPSTSTAVLDLEKLRLPSFEAPSDSIAPNSPWTY---------ATFGST 91

Query: 387 LPTETLLTS 413
           L TETL+TS
Sbjct: 92  LATETLITS 100


>ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
          Length = 578

 Score = 72.4 bits (176), Expect = 7e-11
 Identities = 55/140 (39%), Positives = 62/140 (44%), Gaps = 14/140 (10%)
 Frame = +3

Query: 36  MSCLLPQFKCLPDSFSIHLKPHHHTPSQPLKYREPIYFGVQCS--------ATVTTA--- 182
           MSCLLPQFKC PD+FS H  P  H   +  K RE IYF VQC+        +T TTA   
Sbjct: 1   MSCLLPQFKCPPDTFSTH--PKLHILCKSPKNREAIYFRVQCALSTTSPPLSTSTTAVLD 58

Query: 183 ---LDMPSLEAHSNQVVANKRWSPATATAVXXXXXXXXXXXXXXXNYAATNRPWTSFIDT 353
              L +PSLE+HSN V A+                                RPWT     
Sbjct: 59  IEKLRLPSLESHSNSVAAH--------------------------------RPWTYIGVV 86

Query: 354 DTATEATFGTALPTETLLTS 413
              TEA F   L  ETLLTS
Sbjct: 87  GPPTEANFEATLARETLLTS 106


>emb|CBI40014.3| unnamed protein product [Vitis vinifera]
          Length = 575

 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 55/140 (39%), Positives = 62/140 (44%), Gaps = 14/140 (10%)
 Frame = +3

Query: 36  MSCLLPQFKCLPDSFSIHLKPHHHTPSQPLKYREPIYFGVQCS--------ATVTTA--- 182
           MSCLLPQFKC PD+FS H K H  +     K RE IYF VQC+        +T TTA   
Sbjct: 1   MSCLLPQFKCPPDTFSTHPKLHILS-----KNREAIYFRVQCALSTTSPPLSTSTTAVLD 55

Query: 183 ---LDMPSLEAHSNQVVANKRWSPATATAVXXXXXXXXXXXXXXXNYAATNRPWTSFIDT 353
              L +PSLE+HSN V A+                                RPWT     
Sbjct: 56  IEKLRLPSLESHSNSVAAH--------------------------------RPWTYIGVV 83

Query: 354 DTATEATFGTALPTETLLTS 413
              TEA F   L  ETLLTS
Sbjct: 84  GPPTEANFEATLARETLLTS 103


>ref|XP_002325455.1| predicted protein [Populus trichocarpa] gi|222862330|gb|EEE99836.1|
           predicted protein [Populus trichocarpa]
          Length = 564

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 43/124 (34%), Positives = 50/124 (40%)
 Frame = +3

Query: 36  MSCLLPQFKCLPDSFSIHLKPHHHTPSQPLKYREPIYFGVQCSATVTTALDMPSLEAHSN 215
           MSCLLPQFKC PDSFSIH               EP  F  QC+ +               
Sbjct: 1   MSCLLPQFKCQPDSFSIHSNG------------EPFCFRAQCALSSA------------- 35

Query: 216 QVVANKRWSPATATAVXXXXXXXXXXXXXXXNYAATNRPWTSFIDTDTATEATFGTALPT 395
                   SP+T+TAV               +  A NRPWT         E  FGT+L T
Sbjct: 36  --------SPSTSTAVLNLEKLRLPSLESHSDSIAANRPWTYIGGIGPPKEPLFGTSLAT 87

Query: 396 ETLL 407
           ETL+
Sbjct: 88  ETLI 91


>ref|XP_002319746.1| predicted protein [Populus trichocarpa] gi|222858122|gb|EEE95669.1|
           predicted protein [Populus trichocarpa]
          Length = 567

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 47/182 (25%), Positives = 68/182 (37%), Gaps = 3/182 (1%)
 Frame = +3

Query: 36  MSCLLPQFKCLPDSFSIHLKPHHHTPSQPLKYREPIYFGVQCSATV--TTALDMPSLEAH 209
           MSCLLPQFKC PD+FS+H +   H  +   +  + +      S  V     L +PSLE H
Sbjct: 1   MSCLLPQFKCQPDTFSVHFRNLQHHGTNHTQLPQCVLSSASPSTAVLDLEKLRLPSLEPH 60

Query: 210 SNQVVANKRWSPATATAVXXXXXXXXXXXXXXXNYAATNRPWTSFIDTDTATEATFGTAL 389
           S+ + A                                NRPWT         +  FGT+L
Sbjct: 61  SDSISA--------------------------------NRPWTYIGGIGPQKKPPFGTSL 88

Query: 390 PTETLLTSXXXXXXXXXXXXXXXXXXXXXXXXXXXLMVSHKSTIKSDIK-PIGLTYEAIS 566
             ETL+ +                            M  + S++K + K PI  T ++ S
Sbjct: 89  AAETLIANDEAVIAAAAAEAVALARAAVKVAKDAAEMAKNYSSMKKETKIPIASTTDSFS 148

Query: 567 SI 572
           S+
Sbjct: 149 SM 150