BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00005407
         (1080 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containi...   439   e-121
ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   429   e-118
ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containi...   427   e-117
ref|XP_002520617.1| pentatricopeptide repeat-containing protein,...   427   e-117
ref|XP_002298671.1| predicted protein [Populus trichocarpa] gi|2...   416   e-114

>ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
            mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  439 bits (1129), Expect = e-121
 Identities = 220/338 (65%), Positives = 263/338 (77%)
 Frame = +3

Query: 66   SHILHQLHLYAKRRASSPGKTVHAHIIKIGLQHFDPLPNSLIDLYGKCGLINNALQVFDE 245
            SH+++QL   A+ ++   GK +H HIIK G+     L N+LI++YGKCGLI +AL +F++
Sbjct: 4    SHLVYQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQ 63

Query: 246  MPHRDPICWASILTAYNFANMPKRTLSMFRDMVSLDGLQPDHFVFTSLVKACTNLGSLRM 425
            +PHRDPI WASILTA N AN+P  TLSMF  M   DGLQPDH+VF  LVKAC  LG+++ 
Sbjct: 64   LPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQ 123

Query: 426  GVQVHARFVSSPYSDDGVVKSALVDMYAKCGLVDAARIVFDSICIKNSVSSTAMISGYAR 605
            G QVHA F+ SP SDD VVKS+LVDMYAKCGL D  R+VFDSI  KNS+S TAMISGYA+
Sbjct: 124  GKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQ 183

Query: 606  SGRKSEAIELLRAMKERNLFVWTALISGLVQSGYWADAFNLFNEMRREGVGIVDPFSVSS 785
            SGRK +AI+L + M  +NL  WTALISGLVQSG W D+F LF EMR +G+ IVDPF +SS
Sbjct: 184  SGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSS 243

Query: 786  IIGVSANLAVLELGKQMHCLVIALGYESSLYVGNALVDMYAKCSDVNAAKSTFDSICSKD 965
            IIG SANLAVL LGKQ+HCLVI LGYESSL+V NALVDMYAKCSDV AAK  F  +  +D
Sbjct: 244  IIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRD 303

Query: 966  VVSWTSIIVGMAQHGRAQEALLLYNEMVLNGVKPNKVT 1079
            +VSWTSIIVG AQHG A+EAL LYN M+  G+KPN+VT
Sbjct: 304  IVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVT 341



 Score = 69.3 bits (168), Expect = 2e-09
 Identities = 43/162 (26%), Positives = 82/162 (50%), Gaps = 5/162 (3%)
 Frame = +3

Query: 120 GKTVHAHIIKIGLQHFDPLPNSLIDLYGKCGLINNALQVFDEMPHRDPICWASILTAYNF 299
           GK +H  +I +G +    + N+L+D+Y KC  +  A ++F  M  RD + W SI+     
Sbjct: 257 GKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQ 316

Query: 300 ANMPKRTLSMFRDMVSLDGLQPDHFVFTSLVKACTNLGSLRMGVQVHARFVSSPYSDDGV 479
             + +  LS++  M+S  GL+P+   F  L+ AC+++G +  G      F +S   D G+
Sbjct: 317 HGLAEEALSLYNRMLST-GLKPNEVTFVGLIYACSHVGLVSKG----RYFFNSMIKDYGI 371

Query: 480 VKS-----ALVDMYAKCGLVDAARIVFDSICIKNSVSSTAMI 590
             S      L+D+ ++ G ++ A  +  ++  K   ++ A +
Sbjct: 372 NPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAAL 413


>ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  429 bits (1103), Expect = e-118
 Identities = 216/338 (63%), Positives = 266/338 (78%)
 Frame = +3

Query: 66   SHILHQLHLYAKRRASSPGKTVHAHIIKIGLQHFDPLPNSLIDLYGKCGLINNALQVFDE 245
            SH LHQL L A+R+++S    +H+ IIK G      L N+L+D+YGKCGLI  ALQ+FDE
Sbjct: 4    SHFLHQLQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDE 63

Query: 246  MPHRDPICWASILTAYNFANMPKRTLSMFRDMVSLDGLQPDHFVFTSLVKACTNLGSLRM 425
            MP+RD + WASILTA+N A +P+RTLSM   M + DGLQPDHFVF  +V+AC++LG LR+
Sbjct: 64   MPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRL 123

Query: 426  GVQVHARFVSSPYSDDGVVKSALVDMYAKCGLVDAARIVFDSICIKNSVSSTAMISGYAR 605
            G QVHARF+ S + DD VVKS+L+DMY KCG  D AR VFDSI  KNSVS T+MISGYAR
Sbjct: 124  GKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYAR 183

Query: 606  SGRKSEAIELLRAMKERNLFVWTALISGLVQSGYWADAFNLFNEMRREGVGIVDPFSVSS 785
            SGRK EA++L      RNLF WTALISGL+QSG+   +F+LFNEMRREG+ IVDP  +SS
Sbjct: 184  SGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSS 243

Query: 786  IIGVSANLAVLELGKQMHCLVIALGYESSLYVGNALVDMYAKCSDVNAAKSTFDSICSKD 965
            ++G  ANLA+LELGKQ+H LVIALG+ES L++ NALVDMYAKCSD+ AAK  F  +  KD
Sbjct: 244  VVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKD 303

Query: 966  VVSWTSIIVGMAQHGRAQEALLLYNEMVLNGVKPNKVT 1079
            V+SWTSIIVG AQHG+A+EAL LY+EMVL+ +KPN+VT
Sbjct: 304  VISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVT 341


>ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
            mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  427 bits (1099), Expect = e-117
 Identities = 216/338 (63%), Positives = 266/338 (78%)
 Frame = +3

Query: 66   SHILHQLHLYAKRRASSPGKTVHAHIIKIGLQHFDPLPNSLIDLYGKCGLINNALQVFDE 245
            SH LHQL L A+R+++S    +H+ IIK G      L N+L+D+YGKCGLI  ALQ+FDE
Sbjct: 4    SHFLHQLQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDE 63

Query: 246  MPHRDPICWASILTAYNFANMPKRTLSMFRDMVSLDGLQPDHFVFTSLVKACTNLGSLRM 425
            MP+RD + WASILTA+N A +P+RTLSM   M + DGLQPDHFVF  +V+AC++LG LR+
Sbjct: 64   MPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRL 123

Query: 426  GVQVHARFVSSPYSDDGVVKSALVDMYAKCGLVDAARIVFDSICIKNSVSSTAMISGYAR 605
            G QVHARF+ S + DD VVKS+L+DMY KCG  D AR VFDSI  KNSVS T+MISGYAR
Sbjct: 124  GKQVHARFMLSFFCDDEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYAR 183

Query: 606  SGRKSEAIELLRAMKERNLFVWTALISGLVQSGYWADAFNLFNEMRREGVGIVDPFSVSS 785
            SGRK EA++L      RNLF WTALISGL+QSG+   +F+LFNEMRREG+ IVDP  +SS
Sbjct: 184  SGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSS 243

Query: 786  IIGVSANLAVLELGKQMHCLVIALGYESSLYVGNALVDMYAKCSDVNAAKSTFDSICSKD 965
            ++G  ANLA+LELGKQ+H LVIALG+ES L++ NALVDMYAKCSD+ AAK  F  +  KD
Sbjct: 244  VVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKD 303

Query: 966  VVSWTSIIVGMAQHGRAQEALLLYNEMVLNGVKPNKVT 1079
            V+SWTSIIVG AQHG+A+EAL LY+EMVL+ +KPN+VT
Sbjct: 304  VISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVT 341


>ref|XP_002520617.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223540178|gb|EEF41753.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 344

 Score =  427 bits (1099), Expect = e-117
 Identities = 214/336 (63%), Positives = 261/336 (77%)
 Frame = +3

Query: 66   SHILHQLHLYAKRRASSPGKTVHAHIIKIGLQHFDPLPNSLIDLYGKCGLINNALQVFDE 245
            SH LHQL L  KR+     K +HA IIK+ L+  +PLPN+L++ YGKCGL+ +A  +F+E
Sbjct: 4    SHYLHQLQLCGKRQTPLTAKKLHAQIIKLSLKESEPLPNTLLNAYGKCGLLQDAYFLFEE 63

Query: 246  MPHRDPICWASILTAYNFANMPKRTLSMFRDMVSLDGLQPDHFVFTSLVKACTNLGSLRM 425
            MP RD + WASILTAYN AN+P +TLS+F  M  +D L+PDHFV+ +LVKAC +L ++R 
Sbjct: 64   MPQRDHVSWASILTAYNLANLPNKTLSIFPTMFIVDKLEPDHFVYATLVKACASLCAVRQ 123

Query: 426  GVQVHARFVSSPYSDDGVVKSALVDMYAKCGLVDAARIVFDSICIKNSVSSTAMISGYAR 605
            G QVHARFV SP+SDD VVKS+L+DMYAKCGL   AR VFDSI  KN+VS TAMISGYA+
Sbjct: 124  GKQVHARFVLSPFSDDDVVKSSLIDMYAKCGLPKIARAVFDSILAKNAVSWTAMISGYAK 183

Query: 606  SGRKSEAIELLRAMKERNLFVWTALISGLVQSGYWADAFNLFNEMRREGVGIVDPFSVSS 785
            SG K EA+EL  +   +NL+ WTALISGLVQSG   D   LF EMRREG+ I+DP  +SS
Sbjct: 184  SGLKVEAMELFSSFPVKNLYSWTALISGLVQSGKGIDGCYLFLEMRREGIDIIDPLVLSS 243

Query: 786  IIGVSANLAVLELGKQMHCLVIALGYESSLYVGNALVDMYAKCSDVNAAKSTFDSICSKD 965
            ++G  ANLAVLE GKQ+H L+IALGYES L++ NALVDMYAKCSD+ AAK  FD +  KD
Sbjct: 244  VVGACANLAVLEFGKQLHGLIIALGYESCLFISNALVDMYAKCSDILAAKEIFDRMIYKD 303

Query: 966  VVSWTSIIVGMAQHGRAQEALLLYNEMVLNGVKPNK 1073
            VVSWTSIIVG AQHGRA+EAL LY++MVL GVKPN+
Sbjct: 304  VVSWTSIIVGAAQHGRAKEALDLYDDMVLAGVKPNE 339



 Score = 91.3 bits (225), Expect = 4e-16
 Identities = 68/248 (27%), Positives = 107/248 (43%), Gaps = 31/248 (12%)
 Frame = +3

Query: 120 GKTVHAHIIKIGLQHFDPLPNSLIDLYGKCGLINNALQVFDEMPHRDPICWASILTAYN- 296
           GK VHA  +       D + +SLID+Y KCGL   A  VFD +  ++ + W ++++ Y  
Sbjct: 124 GKQVHARFVLSPFSDDDVVKSSLIDMYAKCGLPKIARAVFDSILAKNAVSWTAMISGYAK 183

Query: 297 ----------FANMPKRTLSMFRDMVS--------LDGLQP------------DHFVFTS 386
                     F++ P + L  +  ++S        +DG               D  V +S
Sbjct: 184 SGLKVEAMELFSSFPVKNLYSWTALISGLVQSGKGIDGCYLFLEMRREGIDIIDPLVLSS 243

Query: 387 LVKACTNLGSLRMGVQVHARFVSSPYSDDGVVKSALVDMYAKCGLVDAARIVFDSICIKN 566
           +V AC NL  L  G Q+H   ++  Y     + +ALVDMYAKC  + AA+ +FD +  K+
Sbjct: 244 VVGACANLAVLEFGKQLHGLIIALGYESCLFISNALVDMYAKCSDILAAKEIFDRMIYKD 303

Query: 567 SVSSTAMISGYARSGRKSEAIELLRAMKERNLFVWTALISGLVQSGYWADAFNLFNEMRR 746
            VS                               WT++I G  Q G   +A +L+++M  
Sbjct: 304 VVS-------------------------------WTSIIVGAAQHGRAKEALDLYDDMVL 332

Query: 747 EGVGIVDP 770
            GV   +P
Sbjct: 333 AGVKPNEP 340


>ref|XP_002298671.1| predicted protein [Populus trichocarpa] gi|222845929|gb|EEE83476.1|
            predicted protein [Populus trichocarpa]
          Length = 609

 Score =  416 bits (1070), Expect = e-114
 Identities = 212/335 (63%), Positives = 255/335 (76%)
 Frame = +3

Query: 75   LHQLHLYAKRRASSPGKTVHAHIIKIGLQHFDPLPNSLIDLYGKCGLINNALQVFDEMPH 254
            LH+L L  K +A    K +HA I+K GL    PLPN+L+D YGKC L+ +A  +FDEMP 
Sbjct: 6    LHRLKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQ 65

Query: 255  RDPICWASILTAYNFANMPKRTLSMFRDMVSLDGLQPDHFVFTSLVKACTNLGSLRMGVQ 434
            RD + WASILTAYN A +P +TLS+F  M + D LQPDHFV+ +L+KAC +L SLR+G Q
Sbjct: 66   RDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQ 125

Query: 435  VHARFVSSPYSDDGVVKSALVDMYAKCGLVDAARIVFDSICIKNSVSSTAMISGYARSGR 614
            VHARFV SP+ DD VVKS+LVDMYAKCGL   AR VFDSI +K SVS TAM+SGYARSG 
Sbjct: 126  VHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGL 185

Query: 615  KSEAIELLRAMKERNLFVWTALISGLVQSGYWADAFNLFNEMRREGVGIVDPFSVSSIIG 794
            K EA+EL      RNL+ WTALISGLVQSGY  D   +F EMRREGV IVDP  +SS++G
Sbjct: 186  KDEAMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVG 245

Query: 795  VSANLAVLELGKQMHCLVIALGYESSLYVGNALVDMYAKCSDVNAAKSTFDSICSKDVVS 974
              ANLAVL LGKQ+H LVI  GYES L++ NALVDMYAKCSD+ AA++ F+ +  +DVVS
Sbjct: 246  ACANLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVS 305

Query: 975  WTSIIVGMAQHGRAQEALLLYNEMVLNGVKPNKVT 1079
            WTSIIVG AQHGRA+EAL LY++MVL  +KPN+VT
Sbjct: 306  WTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVT 340