BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00005241
         (947 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O64981.1|RCA_PHAVU RecName: Full=Ribulose bisphosphate carbox...   239   1e-88
gb|AFU50382.1| chloroplast ribulose bisphosphate carboxylase/oxy...   223   4e-84
gb|AFU50383.1| chloroplast ribulose bisphosphate carboxylase/oxy...   221   1e-83
gb|AFU50380.1| chloroplast ribulose bisphosphate carboxylase/oxy...   218   9e-83
gb|ABK24548.1| unknown [Picea sitchensis]                             224   9e-83

>sp|O64981.1|RCA_PHAVU RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
           chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
           Precursor gi|3033513|gb|AAC12868.1| rubisco activase
           [Phaseolus vulgaris]
          Length = 441

 Score =  239 bits (609), Expect(2) = 1e-88
 Identities = 133/202 (65%), Positives = 153/202 (75%), Gaps = 7/202 (3%)
 Frame = -3

Query: 873 MATAVSTVGSVP---LNLNXXXXXXXXXXXXAFMGSSLKKV-SSRIRNSKVSTGSFKIVA 706
           MA ++STVG+V    LNLN             F G+SLKKV SSR+ NSK+++GSFKIVA
Sbjct: 1   MAASLSTVGAVNRTLLNLNGSGGGASGPSSA-FFGTSLKKVISSRVPNSKLTSGSFKIVA 59

Query: 705 G--EVDEKKQTDKDRWRGLXXXXXXXXXXXTRGKGMVDSLFQAPSGAGTHDPIMSSYEYL 532
              E++E +QT+ DRWRGL           TRGKG+VDSLFQAP  AGTH  ++SS++YL
Sbjct: 60  ADKEIEETQQTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYL 119

Query: 531 SAGLRTY-MDNNLDGLYIAPAFMDKLVVHICKNFITLPNIKVPLILGIWGGKGQGKSFQC 355
           SAGLR Y  DN  DG YIAPAF+DKLVVHI KNF+TLPNIKVPLILG+WGGKGQGKSFQC
Sbjct: 120 SAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQC 179

Query: 354 ELVFAKMGITPIMMSAGELESG 289
           ELVFAKMGI PIMMSAGELESG
Sbjct: 180 ELVFAKMGINPIMMSAGELESG 201



 Score =  114 bits (286), Expect(2) = 1e-88
 Identities = 54/56 (96%), Positives = 56/56 (100%)
 Frame = -1

Query: 170 VLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVP 3
           VLFINDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKE+NARVP
Sbjct: 228 VLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVP 283


>gb|AFU50382.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
           large isoform a [Ipomoea batatas]
          Length = 484

 Score =  223 bits (568), Expect(2) = 4e-84
 Identities = 124/208 (59%), Positives = 142/208 (68%), Gaps = 13/208 (6%)
 Frame = -3

Query: 873 MATAVSTVGSVP---LNLNXXXXXXXXXXXXAFMGSSLKKVSS-RIRNSKVSTGSFKIVA 706
           MA  VST+G+V    L+LN             F G  LKK S  R+  SK+S      VA
Sbjct: 1   MAATVSTIGAVNKSLLSLNNGSVGSSVPSSG-FFGKGLKKTSGQRVAMSKISNSRQMRVA 59

Query: 705 GE--------VDEKKQTDKDRWRGLXXXXXXXXXXXTRGKGMVDSLFQAPSGAGTHDPIM 550
            E        +DE+KQT++DRW+GL           TRGKG+VDSLFQAP G GTH  ++
Sbjct: 60  AEAPEAAEPEIDEQKQTNQDRWKGLVEDISDDQQDITRGKGLVDSLFQAPMGTGTHHAVL 119

Query: 549 SSYEYLSAGLRTY-MDNNLDGLYIAPAFMDKLVVHICKNFITLPNIKVPLILGIWGGKGQ 373
           SSYEY+S GLR Y +DN LDG YIAPAFMDKLVVHI KNF+ LPNIK+PLILG+WGGKGQ
Sbjct: 120 SSYEYISQGLREYNIDNTLDGFYIAPAFMDKLVVHITKNFLKLPNIKIPLILGVWGGKGQ 179

Query: 372 GKSFQCELVFAKMGITPIMMSAGELESG 289
           GKSFQCELVF KMGI PIMMSAGELESG
Sbjct: 180 GKSFQCELVFRKMGINPIMMSAGELESG 207



 Score =  115 bits (289), Expect(2) = 4e-84
 Identities = 55/56 (98%), Positives = 56/56 (100%)
 Frame = -1

Query: 170 VLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVP 3
           VLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNK+ENARVP
Sbjct: 234 VLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVP 289


>gb|AFU50383.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
           large isoform b [Ipomoea batatas]
          Length = 484

 Score =  221 bits (563), Expect(2) = 1e-83
 Identities = 123/208 (59%), Positives = 141/208 (67%), Gaps = 13/208 (6%)
 Frame = -3

Query: 873 MATAVSTVGSVP---LNLNXXXXXXXXXXXXAFMGSSLKKVSS-RIRNSKVSTGSFKIVA 706
           MA  VST+G+V    L+LN             F G  LKK S  R+   K+S      VA
Sbjct: 1   MAATVSTIGAVNKSLLSLNNGSVGSSVPSSG-FFGKGLKKTSGQRVAMPKISNSRQMRVA 59

Query: 705 GE--------VDEKKQTDKDRWRGLXXXXXXXXXXXTRGKGMVDSLFQAPSGAGTHDPIM 550
            E        +DE+KQT++DRW+GL           TRGKG+VDSLFQAP G GTH  ++
Sbjct: 60  AEAPEAAEPEIDEQKQTNQDRWKGLVEDISDDQQDITRGKGLVDSLFQAPMGTGTHHAVL 119

Query: 549 SSYEYLSAGLRTY-MDNNLDGLYIAPAFMDKLVVHICKNFITLPNIKVPLILGIWGGKGQ 373
           SSYEY+S GLR Y +DN LDG YIAPAFMDKLVVHI KNF+ LPNIK+PLILG+WGGKGQ
Sbjct: 120 SSYEYISQGLREYNIDNTLDGFYIAPAFMDKLVVHITKNFLKLPNIKIPLILGVWGGKGQ 179

Query: 372 GKSFQCELVFAKMGITPIMMSAGELESG 289
           GKSFQCELVF KMGI PIMMSAGELESG
Sbjct: 180 GKSFQCELVFRKMGINPIMMSAGELESG 207



 Score =  115 bits (289), Expect(2) = 1e-83
 Identities = 55/56 (98%), Positives = 56/56 (100%)
 Frame = -1

Query: 170 VLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVP 3
           VLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNK+ENARVP
Sbjct: 234 VLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVP 289


>gb|AFU50380.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
           large isoform [Ipomoea batatas]
           gi|407911672|gb|AFU50384.1| chloroplast ribulose
           bisphosphate carboxylase/oxygenase activase large
           isoform c [Ipomoea batatas]
          Length = 484

 Score =  218 bits (556), Expect(2) = 9e-83
 Identities = 121/208 (58%), Positives = 140/208 (67%), Gaps = 13/208 (6%)
 Frame = -3

Query: 873 MATAVSTVGSVP---LNLNXXXXXXXXXXXXAFMGSSLKKVSS-RIRNSKVSTGSFKIVA 706
           MA  VST+G+V    L+LN             F G  LKK    R+   K+S      VA
Sbjct: 1   MAATVSTIGAVNKSLLSLNNGSVGSSVPSSG-FFGKGLKKTGGHRVAMPKISNSRQMRVA 59

Query: 705 GE--------VDEKKQTDKDRWRGLXXXXXXXXXXXTRGKGMVDSLFQAPSGAGTHDPIM 550
            E        +DE+KQT++DRW+GL           TRGKG+VD+LFQAP G GTH  ++
Sbjct: 60  AEAPEAAEPEIDEQKQTNQDRWKGLVEDISDDQQDITRGKGLVDTLFQAPMGTGTHHAVL 119

Query: 549 SSYEYLSAGLRTY-MDNNLDGLYIAPAFMDKLVVHICKNFITLPNIKVPLILGIWGGKGQ 373
           SSYEY+S GLR Y +DN LDG YIAPAFMDKLVVHI KNF+ LPNIK+PLILG+WGGKGQ
Sbjct: 120 SSYEYISQGLREYNIDNTLDGFYIAPAFMDKLVVHITKNFLKLPNIKIPLILGVWGGKGQ 179

Query: 372 GKSFQCELVFAKMGITPIMMSAGELESG 289
           GKSFQCELVF KMGI PIMMSAGELESG
Sbjct: 180 GKSFQCELVFRKMGINPIMMSAGELESG 207



 Score =  115 bits (289), Expect(2) = 9e-83
 Identities = 55/56 (98%), Positives = 56/56 (100%)
 Frame = -1

Query: 170 VLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVP 3
           VLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNK+ENARVP
Sbjct: 234 VLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVP 289


>gb|ABK24548.1| unknown [Picea sitchensis]
          Length = 480

 Score =  224 bits (570), Expect(2) = 9e-83
 Identities = 117/201 (58%), Positives = 138/201 (68%), Gaps = 6/201 (2%)
 Frame = -3

Query: 873 MATAVSTVGSVPLNLNXXXXXXXXXXXXA-----FMGSSLKKVSSRIRNSKVSTGSFKIV 709
           MATA + VGS+ ++ N                  F G  LKK S    ++      FK+V
Sbjct: 1   MATAAAAVGSITVSSNLPLSSGQASILKTVPSTGFFGCGLKKTSFNASHTFTKANHFKVV 60

Query: 708 AGEVDEKKQTDKDRWRGLXXXXXXXXXXXTRGKGMVDSLFQAPSGAGTHDPIMSSYEYLS 529
           A E+DE KQTDKD+W+GL            RGKG VDSLFQAP G+GTH+ +MS+Y+Y+S
Sbjct: 61  A-EIDEGKQTDKDKWKGLAFDESDDQMDIRRGKGKVDSLFQAPMGSGTHNVVMSTYDYIS 119

Query: 528 AGLRTY-MDNNLDGLYIAPAFMDKLVVHICKNFITLPNIKVPLILGIWGGKGQGKSFQCE 352
              RTY  DN +DG YIAP+FMDKL+VHI KNF+ LPNIKVPLILGIWGGKGQGKSFQCE
Sbjct: 120 TAQRTYDFDNTMDGYYIAPSFMDKLLVHISKNFMNLPNIKVPLILGIWGGKGQGKSFQCE 179

Query: 351 LVFAKMGITPIMMSAGELESG 289
           LVFAK+GI PIMMSAGELESG
Sbjct: 180 LVFAKLGINPIMMSAGELESG 200



 Score =  110 bits (275), Expect(2) = 9e-83
 Identities = 52/56 (92%), Positives = 54/56 (96%)
 Frame = -1

Query: 170 VLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVP 3
           VLFINDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNK++N RVP
Sbjct: 227 VLFINDLDAGAGRMGSTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNPRVP 282