BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00005177
         (948 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P29344.1|RR1_SPIOL RecName: Full=30S ribosomal protein S1, ch...   310   e-121
ref|XP_002280604.1| PREDICTED: 30S ribosomal protein S1, chlorop...   314   e-121
ref|XP_004147619.1| PREDICTED: 30S ribosomal protein S1, chlorop...   315   e-120
ref|XP_002519282.1| tex protein-relatedtranscription accessory p...   302   e-117
ref|NP_850903.1| small subunit ribosomal protein S1 [Arabidopsis...   305   e-116

>sp|P29344.1|RR1_SPIOL RecName: Full=30S ribosomal protein S1, chloroplastic; AltName:
           Full=CS1; Flags: Precursor gi|18060|emb|CAA46927.1|
           ribosomal protein S1 [Spinacia oleracea]
           gi|170143|gb|AAA34045.1| chloroplast ribosomal protein
           S1 [Spinacia oleracea]
          Length = 411

 Score =  310 bits (793), Expect(2) = e-121
 Identities = 155/184 (84%), Positives = 171/184 (92%)
 Frame = +2

Query: 395 QYDLAWERCRQLEAEDVVVKGKVIDANKGGIVAMVEGLRGFVPFSQISTKLVAEEIIGKE 574
           QY+LAWERCRQL+AEDVVVKGK++ ANKGG+VA+VEGLRGFVPFSQIS+K  AEE++ KE
Sbjct: 169 QYELAWERCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSSAEELLEKE 228

Query: 575 IPLKFVEVDEKHPRLVLSNRKAVADSQTQLQIGLVVTGSVQSLKPYGALIDIGGINGLLH 754
           IPLKFVEVDE+  RLV+SNRKA+ADSQ QL IG VVTG+VQSLKPYGA IDIGGINGLLH
Sbjct: 229 IPLKFVEVDEEQSRLVMSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLH 288

Query: 755 VSQISHERVSDLAKLLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNSKLVFEK 934
           VSQISH+RVSD+A +LQPGD LKVMILSHDRERGRVSLSTKKLEPTPGDMIRN KLVFEK
Sbjct: 289 VSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEK 348

Query: 935 AEEM 946
           AEEM
Sbjct: 349 AEEM 352



 Score =  152 bits (384), Expect(2) = e-121
 Identities = 73/97 (75%), Positives = 84/97 (86%)
 Frame = +1

Query: 34  SNAQTRERLKLKEMFLQAYERCLNDPMDGVSFTLDEFHAAIQMYDFGSEIGSKVTGTVFY 213
           SNAQTRER KLK++F  AYERC N PM+GVSFT+D+FH A+  YDF SE+GS+V GTVF 
Sbjct: 46  SNAQTRERQKLKQLFEDAYERCRNAPMEGVSFTIDDFHTALDKYDFNSEMGSRVKGTVFC 105

Query: 214 TDANGALVDITAKSSAYLPITEACIYDIKHVEEAGIV 324
           TDANGALVDITAKSSAYLP+ EACIY IK+VEEAGI+
Sbjct: 106 TDANGALVDITAKSSAYLPLAEACIYRIKNVEEAGII 142


>ref|XP_002280604.1| PREDICTED: 30S ribosomal protein S1, chloroplastic [Vitis vinifera]
           gi|296083203|emb|CBI22839.3| unnamed protein product
           [Vitis vinifera]
          Length = 410

 Score =  314 bits (804), Expect(2) = e-121
 Identities = 157/184 (85%), Positives = 172/184 (93%)
 Frame = +2

Query: 395 QYDLAWERCRQLEAEDVVVKGKVIDANKGGIVAMVEGLRGFVPFSQISTKLVAEEIIGKE 574
           QYDLAWERCRQL+AEDVVVKGKV+ ANKGG+VA+VEGLRGFVPFSQIS+K  AEE++ KE
Sbjct: 168 QYDLAWERCRQLQAEDVVVKGKVVGANKGGVVALVEGLRGFVPFSQISSKTTAEELLDKE 227

Query: 575 IPLKFVEVDEKHPRLVLSNRKAVADSQTQLQIGLVVTGSVQSLKPYGALIDIGGINGLLH 754
           +P+KFVEVDE+  RLVLSNRKA+ADSQ QL IG VVTG+VQSLKPYGA IDIGGINGLLH
Sbjct: 228 LPVKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLH 287

Query: 755 VSQISHERVSDLAKLLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNSKLVFEK 934
           VSQISH+RVSD+A +LQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRN KLVFEK
Sbjct: 288 VSQISHDRVSDIATVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEK 347

Query: 935 AEEM 946
           AEEM
Sbjct: 348 AEEM 351



 Score =  147 bits (371), Expect(2) = e-121
 Identities = 72/97 (74%), Positives = 82/97 (84%)
 Frame = +1

Query: 34  SNAQTRERLKLKEMFLQAYERCLNDPMDGVSFTLDEFHAAIQMYDFGSEIGSKVTGTVFY 213
           SNAQT+ERLKLKEMF  AYERC   P +GVSF+ D+F++A+  YDF SEIG+KV GTVF 
Sbjct: 45  SNAQTKERLKLKEMFEDAYERCRTAPTEGVSFSADDFYSALDKYDFNSEIGTKVKGTVFC 104

Query: 214 TDANGALVDITAKSSAYLPITEACIYDIKHVEEAGIV 324
           TD NGALVDITAKSSAYLP+ EACI+ IKHVEEAGIV
Sbjct: 105 TDTNGALVDITAKSSAYLPVYEACIHKIKHVEEAGIV 141


>ref|XP_004147619.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Cucumis
           sativus] gi|449517357|ref|XP_004165712.1| PREDICTED: 30S
           ribosomal protein S1, chloroplastic-like [Cucumis
           sativus]
          Length = 413

 Score =  315 bits (807), Expect(2) = e-120
 Identities = 158/184 (85%), Positives = 172/184 (93%)
 Frame = +2

Query: 395 QYDLAWERCRQLEAEDVVVKGKVIDANKGGIVAMVEGLRGFVPFSQISTKLVAEEIIGKE 574
           QYDLAWERCRQL+AEDVVVKGKV+DANKGG+VA+VEGLRGFVPFSQISTK  AEE++ KE
Sbjct: 172 QYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSNAEELLSKE 231

Query: 575 IPLKFVEVDEKHPRLVLSNRKAVADSQTQLQIGLVVTGSVQSLKPYGALIDIGGINGLLH 754
           +PLKFVEVDE+  RLVLSNRKA+ADSQ QL IG VVTG+VQSLKPYGA IDIGGINGLLH
Sbjct: 232 LPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLH 291

Query: 755 VSQISHERVSDLAKLLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNSKLVFEK 934
           VSQISH+R+SD+A +LQPGD LKVMILSHDRERGRVSLSTKKLEPTPGDMIRN KLVFEK
Sbjct: 292 VSQISHDRISDIATVLQPGDSLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEK 351

Query: 935 AEEM 946
           AEEM
Sbjct: 352 AEEM 355



 Score =  145 bits (366), Expect(2) = e-120
 Identities = 68/93 (73%), Positives = 82/93 (88%)
 Frame = +1

Query: 43  QTRERLKLKEMFLQAYERCLNDPMDGVSFTLDEFHAAIQMYDFGSEIGSKVTGTVFYTDA 222
           QTRER KLKE+F +AYERC N P++G+SFTL++FHAA++ YDF SE+G+KV GTVF TD 
Sbjct: 52  QTRERFKLKEVFEEAYERCRNAPVEGISFTLEDFHAALEKYDFDSELGTKVKGTVFCTDN 111

Query: 223 NGALVDITAKSSAYLPITEACIYDIKHVEEAGI 321
           NGALVDITAKSSAYLP+ EACI+ IKHVEEAG+
Sbjct: 112 NGALVDITAKSSAYLPLQEACIHRIKHVEEAGV 144


>ref|XP_002519282.1| tex protein-relatedtranscription accessory protein, putative
           [Ricinus communis] gi|223541597|gb|EEF43146.1| tex
           protein-relatedtranscription accessory protein, putative
           [Ricinus communis]
          Length = 412

 Score =  302 bits (774), Expect(2) = e-117
 Identities = 153/185 (82%), Positives = 170/185 (91%), Gaps = 1/185 (0%)
 Frame = +2

Query: 395 QYDLAWERCRQLEAEDVVVKGKVIDANKGGIVAMVEG-LRGFVPFSQISTKLVAEEIIGK 571
           QYDL+WERCRQL+AEDV+VKGKV+ ANKGG+VA+VEG LRGFVPFSQIS+K  AEE++ K
Sbjct: 170 QYDLSWERCRQLQAEDVIVKGKVVGANKGGVVAIVEGGLRGFVPFSQISSKSTAEELLEK 229

Query: 572 EIPLKFVEVDEKHPRLVLSNRKAVADSQTQLQIGLVVTGSVQSLKPYGALIDIGGINGLL 751
           E+PLKFV+VDE+  RLVLSNRKA+ADSQ QL IG VV G+VQSLKPYGA IDIGGINGLL
Sbjct: 230 ELPLKFVDVDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLL 289

Query: 752 HVSQISHERVSDLAKLLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNSKLVFE 931
           HVSQISH+RVSD+A +LQPGD LKVMILSHDRERGRVSLSTKKLEPTPGDMIRN KLVFE
Sbjct: 290 HVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFE 349

Query: 932 KAEEM 946
           KAEEM
Sbjct: 350 KAEEM 354



 Score =  145 bits (366), Expect(2) = e-117
 Identities = 69/97 (71%), Positives = 83/97 (85%)
 Frame = +1

Query: 34  SNAQTRERLKLKEMFLQAYERCLNDPMDGVSFTLDEFHAAIQMYDFGSEIGSKVTGTVFY 213
           SNAQT+ER KLK++F  AYERC   PM+GV+FT ++FH+A++ YDF SEIG+ V GTVF 
Sbjct: 47  SNAQTKEREKLKQLFEDAYERCRTAPMEGVAFTAEDFHSALEKYDFNSEIGTTVKGTVFM 106

Query: 214 TDANGALVDITAKSSAYLPITEACIYDIKHVEEAGIV 324
           TDANGA+VDITAKSSAYLP+ EACI+ IKHVEEAGIV
Sbjct: 107 TDANGAVVDITAKSSAYLPVQEACIHKIKHVEEAGIV 143


>ref|NP_850903.1| small subunit ribosomal protein S1 [Arabidopsis thaliana]
           gi|13877939|gb|AAK44047.1|AF370232_1 putative ribosomal
           protein S1 [Arabidopsis thaliana]
           gi|16649089|gb|AAL24396.1| Unknown protein [Arabidopsis
           thaliana] gi|21593804|gb|AAM65771.1| ribosomal protein
           S1 [Arabidopsis thaliana] gi|23296539|gb|AAN13122.1|
           putative ribosomal protein S1 [Arabidopsis thaliana]
           gi|332006494|gb|AED93877.1| small subunit ribosomal
           protein S1 [Arabidopsis thaliana]
          Length = 416

 Score =  305 bits (780), Expect(2) = e-116
 Identities = 154/184 (83%), Positives = 168/184 (91%)
 Frame = +2

Query: 395 QYDLAWERCRQLEAEDVVVKGKVIDANKGGIVAMVEGLRGFVPFSQISTKLVAEEIIGKE 574
           QY+LAWERCRQL+AEDV+VK KVI ANKGG+VA+VEGLRGFVPFSQIS+K  AEE++ KE
Sbjct: 172 QYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEELLEKE 231

Query: 575 IPLKFVEVDEKHPRLVLSNRKAVADSQTQLQIGLVVTGSVQSLKPYGALIDIGGINGLLH 754
           IPLKFVEVDE+  +LVLSNRKAVADSQ QL IG VV G VQSLKPYGA IDIGGINGLLH
Sbjct: 232 IPLKFVEVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFIDIGGINGLLH 291

Query: 755 VSQISHERVSDLAKLLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNSKLVFEK 934
           VSQISH+RVSD+A +LQPGD LKVMILSHDR+RGRVSLSTKKLEPTPGDMIRN KLVFEK
Sbjct: 292 VSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTPGDMIRNPKLVFEK 351

Query: 935 AEEM 946
           AEEM
Sbjct: 352 AEEM 355



 Score =  141 bits (355), Expect(2) = e-116
 Identities = 68/97 (70%), Positives = 83/97 (85%)
 Frame = +1

Query: 34  SNAQTRERLKLKEMFLQAYERCLNDPMDGVSFTLDEFHAAIQMYDFGSEIGSKVTGTVFY 213
           S+ QT+ERL+LK+MF  AYERC   PM+GV+FT+D+F AAI+ YDF SEIG++V GTVF 
Sbjct: 49  SSGQTKERLELKKMFEDAYERCRTSPMEGVAFTVDDFAAAIEQYDFNSEIGTRVKGTVFK 108

Query: 214 TDANGALVDITAKSSAYLPITEACIYDIKHVEEAGIV 324
           TDANGALVDI+AKSSAYL + +ACI+ IKHVEEAGIV
Sbjct: 109 TDANGALVDISAKSSAYLSVEQACIHRIKHVEEAGIV 145