BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00005149
         (3717 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002324295.1| rna-dependent RNA polymerase [Populus tricho...  1672   0.0  
ref|XP_002308662.1| rna-dependent RNA polymerase [Populus tricho...  1659   0.0  
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...  1642   0.0  
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...  1640   0.0  
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]    1631   0.0  

>ref|XP_002324295.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1200

 Score = 1672 bits (4329), Expect = 0.0
 Identities = 804/1178 (68%), Positives = 970/1178 (82%), Gaps = 7/1178 (0%)
 Frame = +3

Query: 183  MGSEDKEKDLVVTQISVGGFDDSIKAKNLLEYFEENVGLVWRCRLKTSTTPSDSYPEFEI 362
            M +E   K+ VVTQ+SVGGFD  + AK+LLEY +  +GLVWRCRLKTS TP +SYP FEI
Sbjct: 1    MEAEGSAKETVVTQVSVGGFDIHVTAKDLLEYLDRAIGLVWRCRLKTSWTPPESYPNFEI 60

Query: 363  -DTTKLKRNT-YEKVVPHAFVHFAIPDSARSALDAAGRGDLILNDRPLMVNLGPENTHRM 536
             D TK++R   Y +VVPHAFVHFA+P SA  A++A+GR +L LN++ L V+LGP+N   +
Sbjct: 61   TDITKIERTEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTL 120

Query: 537  NQRRRNKAPFKLPDVCIEIGTWVSEDEFFVGWRSPPTGVDFVVDPFSGHCKFLFTKDTAF 716
            NQRRR   PFKL DV  EIG  VS DEFFVGWR PP+GVDF+VDPF G CKF F+++TAF
Sbjct: 121  NQRRRTTTPFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAF 180

Query: 717  GRGGRAE-AVIKCNFKVEFMARDIRWMNNYSESSKLILLMCLESAPSIYYRTADDDIEES 893
                 +E AVIKC+FKVEF+ RDI  +  Y+E+S L+LL+ L SAP ++YRTADDDIE  
Sbjct: 181  SLKSTSEHAVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAW 240

Query: 894  VPFDLLDDDDPWIRTTDFTICGAIGRCNIYRVLIQPRHGIRLRKAMQYLKERRVFF---K 1064
            VPFDLLDDDDPWIRTTDFT  GAIGRC+ YRV I PRHG +LRKA++YLKERRV     +
Sbjct: 241  VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEE 300

Query: 1065 DLPRRIKIQDEPDFGMPMHDQLFCIQSKEGISFKILFLVNAVLHKGIFNQYTLSDEFFNL 1244
            +  RRI+I DEPDFGMPM D  FCI  KEGI+F++LFLVNAV+HKGIFNQ+ LS++FF+L
Sbjct: 301  NHRRRIRILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDL 360

Query: 1245 MKSQKEEVSIAALKHICSTKRPEFNAYERMKNVLDWLLKNPTLLRT-RELDDIVEVRRLI 1421
            +++Q  EV+++ALKHIC+ +RP FNAY R+K V +WLLKNP L +  ++L D+VE+RRL+
Sbjct: 361  LRNQHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLV 420

Query: 1422 ITPTKAYCLPPEVELSNRVLRNYKSFADRFLRVTFMDEGMQMLNKSAVTYYPASIVIDIT 1601
            ITPTKAYCLPPEVELSNRVLR YK  ADRFLRVTFMDEG+Q +N + + YY A IV DIT
Sbjct: 421  ITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDIT 480

Query: 1602 SNLISQKTNVFRRVRDIVSNGFYLCGRKYSFLAFSANQLRDRSAWFFAENQNITVAAILN 1781
            SN   QKT +F+RVR I++ GFYLCGR+YSFLAFSANQLRD+SAWFF+E +NI+V  + +
Sbjct: 481  SNSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKS 540

Query: 1782 WMGHFTIRNIAKCAARMGQCFSSTYATIKVPHDNVDFELPDIKRNNYDFSDGIGMITPDL 1961
            WMG FT RNIAKCAARMGQCFSSTYATI+VP + V+ +LPDI+RN Y FSDGIG+ITPDL
Sbjct: 541  WMGKFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDL 600

Query: 1962 AMEVAERLQLKVNPPCAYQIRYAGCKGVVACWPVRKCGIRLSLRQSMNKFVSKHDILEVC 2141
            A EVAE+L+L ++PPCAYQIRYAGCKGVVACWP +  G+RLSLR SMNKF S H  LE+C
Sbjct: 601  AREVAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQSNHTTLEIC 660

Query: 2142 SWTRFQPGFLNRQIITLLSALNVSDEIFWNMQESMISKLNQMLTSVEIAYDVVTSSCAEE 2321
            SWTRFQPGFLNRQIITLLS LNV D +FW MQE+M+SKLNQM  + ++A+DV+T+SCA++
Sbjct: 661  SWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCADQ 720

Query: 2322 GNTAAIMLSAGFKPHNEPHLRGMLTSIRAAQFGDLREKARIFVSSGRWLMGCLDELAVLE 2501
            GN AAIMLSAGFKP  EPHLRGMLT +RAAQ  DLREK RIFV SGRWLMGCLDEL +LE
Sbjct: 721  GNVAAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELGMLE 780

Query: 2502 QGQCFVQVSNPSIKNCFLNHGSQFLETKNDLQVIKGFVVVAKNPCLHPGDVRILEAVDVP 2681
            QGQCF+QVSN S++ CF+ HG++F E + +LQVIKG VV+AKNPCLHPGDVR+LEAVDVP
Sbjct: 781  QGQCFIQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDVP 840

Query: 2682 SLHHLFDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDEYLIPPSKRSWLPMQYEPSEVR 2861
             LHHL+DCLVFPQKG+RPHTNEASGSDLDGDLYFVTWDE LIPPSKRSW+PMQY+ +E +
Sbjct: 841  GLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAK 900

Query: 2862 EIPGLVQTKDITRFFATNIVNENLGTICNAHVVHADNSEYGAMDENCIKLAELAAEAVDF 3041
             +   V  +DI  FFA N+VN+NLG ICNAHVVHAD SEYGA D+NC+ LAELAA AVDF
Sbjct: 901  LLARPVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAELAATAVDF 960

Query: 3042 PKTGKIVNMPSHLKPKLYPDFMGKEDFLSYKSTKILGRLYRKIKDDYDTELTAPTEVSFL 3221
            PKTGK+V+MP +LKPK+YPDFMGKE++ SYKS KILGRLYR+IKD YD ++ A +E++ +
Sbjct: 961  PKTGKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSELNLV 1020

Query: 3222 PKEIPYDADLETPGSETFITEAWGFKCSHDEQLNGLLGQYKVNKEEEVAVGHIWSMPKYT 3401
            P +IPYD+DLE  G+  +I++AW  KCS+D QLNGLL QYKV +EEEV  GHIWSMPKY+
Sbjct: 1021 PGDIPYDSDLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGHIWSMPKYS 1080

Query: 3402 SKKQGELKERLKNAYNALKKEFRRNFEHLGSDFDDLSDNEKNAAYEQKASAWYHVTYHPK 3581
            S+KQGELK+RLK++YN+LKKEFR+ FE +  +F+ L D EKN  YEQKASAWY V YHP 
Sbjct: 1081 SRKQGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVVYHPH 1140

Query: 3582 WVKMSLDVQDPNVFGNGTVMLSFPWIAADYLARIKIKH 3695
            WVK SL++QDP+  G  +VMLSF WIAADYLARIKI+H
Sbjct: 1141 WVKKSLELQDPDGAGT-SVMLSFAWIAADYLARIKIRH 1177


>ref|XP_002308662.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1198

 Score = 1659 bits (4295), Expect = 0.0
 Identities = 808/1181 (68%), Positives = 960/1181 (81%), Gaps = 5/1181 (0%)
 Frame = +3

Query: 183  MGSEDKEKDLVVTQISVGGFDDSIKAKNLLEYFEENVGLVWRCRLKTSTTPSDSYPEFEI 362
            M +E   K+ VVTQ+S+GGFD  + AK+LLEY E  +GLVWRCRLKTS TP +SYP FEI
Sbjct: 1    METEGSAKETVVTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEI 60

Query: 363  -DTTKLKRNT-YEKVVPHAFVHFAIPDSARSALDAAGRGDLILNDRPLMVNLGPENTHRM 536
             D TK+ R   Y +V PHAFVHFA+P SA  A+DAA R +L LN++ L  +LGPEN   +
Sbjct: 61   TDITKITRTEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTL 120

Query: 537  NQRRRNKAPFKLPDVCIEIGTWVSEDEFFVGWRSPPTGVDFVVDPFSGHCKFLFTKDTAF 716
            NQRRR   PFKL  V +EIGT VS DEFFVGWR PPTGVDF+VDPF G C+F F+++TAF
Sbjct: 121  NQRRRKTTPFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAF 180

Query: 717  GRGGRAE-AVIKCNFKVEFMARDIRWMNNYSESSKLILLMCLESAPSIYYRTADDDIEES 893
                 AE AVIKC+FKVEF+ RDI  +  Y+E+S L+LL+ L SAP ++YRTADDDIE S
Sbjct: 181  SFKSTAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVS 240

Query: 894  VPFDLLDDDDPWIRTTDFTICGAIGRCNIYRVLIQPRHGIRLRKAMQYLKERRVFFKDLP 1073
            VPFDLLDDDDPWIRTTDFT  GAIGRC+ YRV I PRHG +LRKA+ +LKERRV  + L 
Sbjct: 241  VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLR 300

Query: 1074 RRIKIQDEPDFGMPMHDQLFCIQSKEGISFKILFLVNAVLHKGIFNQYTLSDEFFNLMKS 1253
            R I+I+DEPDFGMPM D  FCI  KEGI+F +LFLVNAV+HKGIFNQ+ LS++FF+L+++
Sbjct: 301  RPIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRN 360

Query: 1254 QKEEVSIAALKHICSTKRPEFNAYERMKNVLDWLLKNPTLLRT-RELDDIVEVRRLIITP 1430
            Q  EV++AALKHI   +RP F+AY+++K   +WLLKNP   +  ++LDDI E+RRL+ITP
Sbjct: 361  QPTEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVITP 420

Query: 1431 TKAYCLPPEVELSNRVLRNYKSFADRFLRVTFMDEGMQMLNKSAVTYYPASIVIDITSNL 1610
            TKAYCLPPEVELSNRVLR YK  ADRFLRVTFMDEG+Q +N +A+ Y+ A IV  ITS  
Sbjct: 421  TKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITSYS 480

Query: 1611 ISQKTNVFRRVRDIVSNGFYLCGRKYSFLAFSANQLRDRSAWFFAENQNITVAAILNWMG 1790
              QKT +F+RVR I++ GFYLCGR+YSFLAFS+NQLRDRSAWFFAE++NI V AI +WMG
Sbjct: 481  FPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMG 540

Query: 1791 HFTIRNIAKCAARMGQCFSSTYATIKVPHDNVDFELPDIKRNNYDFSDGIGMITPDLAME 1970
             FT +NIAKCAARMGQCFSSTYATI+VP + V+ +LPDIKRN YDFSDGIGMITPDLA E
Sbjct: 541  KFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLARE 600

Query: 1971 VAERLQLKVNPPCAYQIRYAGCKGVVACWPVRKCGIRLSLRQSMNKFVSKHDILEVCSWT 2150
            VAE+L+   +PPCAYQIRYAGCKGVVACWP +  GIRLSLR SMNKF S H ILE+CSWT
Sbjct: 601  VAEKLKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICSWT 660

Query: 2151 RFQPGFLNRQIITLLSALNVSDEIFWNMQESMISKLNQMLTSVEIAYDVVTSSCAEEGNT 2330
            RFQPGFLNRQIITLLSALNV D +FW MQE M+SKLNQML   ++A+DV+T+SCAE+GN 
Sbjct: 661  RFQPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTASCAEQGNV 720

Query: 2331 AAIMLSAGFKPHNEPHLRGMLTSIRAAQFGDLREKARIFVSSGRWLMGCLDELAVLEQGQ 2510
            AAIMLSAGFKP  EPHLRGMLT +RAAQ   LREKARIFV SGRWLMGCLDEL VLEQGQ
Sbjct: 721  AAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQ 780

Query: 2511 CFVQVSNPSIKNCFLNHGSQFLETKNDLQVIKGFVVVAKNPCLHPGDVRILEAVDVPSLH 2690
            CF+QVSN  ++NCF+ HGS+F ETK +LQV+KG VV+AKNPCLHPGD+RILEAVD P LH
Sbjct: 781  CFIQVSNSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILEAVDAPGLH 840

Query: 2691 HLFDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDEYLIPPSKRSWLPMQYEPSEVREIP 2870
            HL+DCLVFPQKG+RPH NEASGSDLDGDLYFVTWDE LIPPSKRSW+PMQY+ +E +++ 
Sbjct: 841  HLYDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQLT 900

Query: 2871 GLVQTKDITRFFATNIVNENLGTICNAHVVHADNSEYGAMDENCIKLAELAAEAVDFPKT 3050
              V  +DI  FFA N+ NENLG ICNAHVV AD SEYGA+DE C+ LAELAA AVDFPKT
Sbjct: 901  RPVNHQDIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDFPKT 960

Query: 3051 GKIVNMPSHLKPKLYPDFMGKEDFLSYKSTKILGRLYRKIKDDY-DTELTAPTEVSFLPK 3227
            GKIV+MPS LKPK+YPDFMGKE+  SYKS KILGRLYR+IKD Y D ++ A +E++F+  
Sbjct: 961  GKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSELNFVRG 1020

Query: 3228 EIPYDADLETPGSETFITEAWGFKCSHDEQLNGLLGQYKVNKEEEVAVGHIWSMPKYTSK 3407
            +IPYD DLE  G+  FI++AW  KCS+D QLNGLL QYKV +EEEV  GH+WSMPK +S+
Sbjct: 1021 DIPYDLDLEVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPKGSSR 1080

Query: 3408 KQGELKERLKNAYNALKKEFRRNFEHLGSDFDDLSDNEKNAAYEQKASAWYHVTYHPKWV 3587
            KQG+LKERLK++YN LK+EFR+ FE +  DF  L D+EKN  YE+KASAWY VTYHP W+
Sbjct: 1081 KQGDLKERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHPHWI 1140

Query: 3588 KMSLDVQDPNVFGNGTVMLSFPWIAADYLARIKIKHGRMND 3710
            + SL++QD +  G  +VMLSF WIAADYLARIKI+H R+ +
Sbjct: 1141 QKSLELQDSDGAGI-SVMLSFAWIAADYLARIKIRHSRIGN 1180


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score = 1642 bits (4252), Expect = 0.0
 Identities = 804/1176 (68%), Positives = 957/1176 (81%), Gaps = 6/1176 (0%)
 Frame = +3

Query: 183  MGSEDKEKDLVVTQISVGGFDDSIKAKNLLEYFEENVGLVWRCRLKTSTTPSDSYPEFEI 362
            M SE  EKD+VVTQIS+GGFD  + A  L  Y E+ +G V RCRLKTS+TP +SYP+FEI
Sbjct: 1    MESEGSEKDMVVTQISIGGFDQYVTATELTYYLEDTIGSVDRCRLKTSSTPPESYPDFEI 60

Query: 363  -DTTKLKRNT-YEKVVPHAFVHFAIPDSARSALDAAGRGDLILNDRPLMVNLGPENTHRM 536
             DT K++R   Y+KV PHAFVHF  P++A  ALDAAG+ +L L+ +PL V+LGPE    +
Sbjct: 61   IDTAKIERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFHL 120

Query: 537  NQRRRNKAPFKLPDVCIEIGTWVSEDEFFVGWRSPPTGVDFVVDPFSGHCKFLFTKDTAF 716
            NQRRR   PFK PDV +EIG  VS DE+F GWR P +GVDF+VDPF G CKFLFTKDTAF
Sbjct: 121  NQRRRTTFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTAF 180

Query: 717  G-RGGRAEAVIKCNFKVEFMARDIRWMNNYSESSKLILLMCLESAPSIYYRTADDDIEES 893
              +G    AVIKCNFKVEF+ R+I  +    + S LILL+ L S+P +YYRTADDDIEE+
Sbjct: 181  SFKGMPKHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADDDIEET 240

Query: 894  VPFDLLDDDDPWIRTTDFTICGAIGRCNIYRVLIQPRHGIRLRKAMQYLKERRV-FFKDL 1070
            VPFDLLDDDDPWIRTTDFT+ GAIGRCN YR+ I PR+G +L+KAM YL+ RRV   +D 
Sbjct: 241  VPFDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVLEDS 300

Query: 1071 PR-RIKIQDEPDFGMPMHDQLFCIQSKEGISFKILFLVNAVLHKGIFNQYTLSDEFFNLM 1247
            P+ +++++DEPDFG+PM D  FCIQ KEGI F+++FLVNAV+HKGI NQ+ LSD+FF+L+
Sbjct: 301  PKWQLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLL 360

Query: 1248 KSQKEEVSIAALKHICSTKRPEFNAYERMKNVLDWLLKNPTLLRT-RELDDIVEVRRLII 1424
            +SQ+++++IAALKHICS + P F+AY+R+K V  WLLKNP LL++ +ELDDIVEVRRL+I
Sbjct: 361  RSQQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLVI 420

Query: 1425 TPTKAYCLPPEVELSNRVLRNYKSFADRFLRVTFMDEGMQMLNKSAVTYYPASIVIDITS 1604
            TP+KAYCLPPEVELSNRVLRNYK  +DRFLRVTFMDEGMQ +N + + YY A IV  ITS
Sbjct: 421  TPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITS 480

Query: 1605 NLISQKTNVFRRVRDIVSNGFYLCGRKYSFLAFSANQLRDRSAWFFAENQNITVAAILNW 1784
            N   QKT VF+RV+ I+++GFYLCGRKYSFLAFS+NQLRDRSAWFFAE++  +V AI +W
Sbjct: 481  NSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSW 540

Query: 1785 MGHFTIRNIAKCAARMGQCFSSTYATIKVPHDNVDFELPDIKRNNYDFSDGIGMITPDLA 1964
            MG FT RN+AKCAARMGQCFSSTYAT++VP   V  ELPDIKRN YDFSDGIG I PDLA
Sbjct: 541  MGKFTNRNVAKCAARMGQCFSSTYATVEVPSWEVK-ELPDIKRNGYDFSDGIGKIVPDLA 599

Query: 1965 MEVAERLQLKVNPPCAYQIRYAGCKGVVACWPVRKCGIRLSLRQSMNKFVSKHDILEVCS 2144
            MEVAE+L+L+   P AYQIRYAGCKGVVACWP    GIRLS R SMNKF+S H ILE+CS
Sbjct: 600  MEVAEKLKLE-GTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTILEICS 658

Query: 2145 WTRFQPGFLNRQIITLLSALNVSDEIFWNMQESMISKLNQMLTSVEIAYDVVTSSCAEEG 2324
            WTRFQPGFLNRQI+TLLSALNV D+IFW MQESMISKLNQMLT  ++A+DV+ +SCAE+G
Sbjct: 659  WTRFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIASCAEQG 718

Query: 2325 NTAAIMLSAGFKPHNEPHLRGMLTSIRAAQFGDLREKARIFVSSGRWLMGCLDELAVLEQ 2504
            NTAAIMLSAGFKP  EPHL+GMLT IRAAQF  LREKARIFV SGRWLMGCLDEL VLEQ
Sbjct: 719  NTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQ 778

Query: 2505 GQCFVQVSNPSIKNCFLNHGSQFLETKNDLQVIKGFVVVAKNPCLHPGDVRILEAVDVPS 2684
            GQCF+QVS+PS++NCFL HGS+F   KN L+VIKG V +AKNPCLHPGDVRILEAVD P 
Sbjct: 779  GQCFIQVSSPSLENCFLKHGSRFSAQKN-LKVIKGIVAIAKNPCLHPGDVRILEAVDAPG 837

Query: 2685 LHHLFDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDEYLIPPSKRSWLPMQYEPSEVRE 2864
            L HL DCLVFPQKGDRPH+NEASGSDLDGDLYFVTW+E LIPPSK+SW PMQY+ +E + 
Sbjct: 838  LEHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAKA 897

Query: 2865 IPGLVQTKDITRFFATNIVNENLGTICNAHVVHADNSEYGAMDENCIKLAELAAEAVDFP 3044
            +   V + DI  FF  N+VNENLG ICNAHVVHAD SEYGA+DE C+ LAE AA AVDFP
Sbjct: 898  LAREVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDFP 957

Query: 3045 KTGKIVNMPSHLKPKLYPDFMGKEDFLSYKSTKILGRLYRKIKDDYDTELTAPTEVSFLP 3224
            KTGK+V +P +LKPK+YPDFMGKE+F +Y+S KILG++YR+IKD Y+ +++  +E  F  
Sbjct: 958  KTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFGA 1017

Query: 3225 KEIPYDADLETPGSETFITEAWGFKCSHDEQLNGLLGQYKVNKEEEVAVGHIWSMPKYTS 3404
             ++P+D DL  PGS  FI +AW  KCS+D QLNGLLGQYKV +EEEV  GH+WSMPKY S
Sbjct: 1018 DKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYKS 1077

Query: 3405 KKQGELKERLKNAYNALKKEFRRNFEHLGSDFDDLSDNEKNAAYEQKASAWYHVTYHPKW 3584
            +KQGEL ERLK+AY++LKKEFR+ FE + SDFD L+D+EKN  YEQKASAWY VTYHP W
Sbjct: 1078 RKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPTW 1137

Query: 3585 VKMSLDVQDPNVFGNGTVMLSFPWIAADYLARIKIK 3692
            VK SL++Q+P+      VMLSF WI ADYLARIKI+
Sbjct: 1138 VKKSLELQNPDEVFGERVMLSFAWITADYLARIKIR 1173


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score = 1640 bits (4248), Expect = 0.0
 Identities = 799/1180 (67%), Positives = 946/1180 (80%), Gaps = 10/1180 (0%)
 Frame = +3

Query: 183  MGSEDKEKDLVVTQISVGGFDDSIKAKNLLEYFEENVGLVWRCRLKTSTTPSDSYPEFEI 362
            M ++ +EK+ VVTQ+S GGFD  + A++L+ Y +  +G VWRCRLKTS TP +SYP FEI
Sbjct: 1    METKRREKETVVTQVSFGGFDKDVTARDLVAYLDNEIGQVWRCRLKTSWTPPESYPNFEI 60

Query: 363  -DTTKLKR-NTYEKVVPHAFVHFAIPDSARSALDAAGRGDLILNDRPLMVNLGPENTHRM 536
             DT  ++R + Y +V PHAFVHFA PDSA  A +AAG  +L  N RP+ V+LGPEN   +
Sbjct: 61   TDTAVIQRVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHL 120

Query: 537  NQRRRNKAPFKLPDVCIEIGTWVSEDEFFVGWRSPPTGVDFVVDPFSGHCKFLFTKDTAF 716
            NQRRR   PFKL DV +EIGT VS DEF VGWR PP+GVDF+VDPF G CKF FT+DTAF
Sbjct: 121  NQRRRTTIPFKLSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAF 180

Query: 717  GRGGRAE-AVIKCNFKVEFMARDIRWMNNYSESSKLILLMCLESAPSIYYRTADDDIEES 893
               G  E AVI+C+FK+EF+ RDI  +  Y+++S L++L+ L SAPS++YRTADDDIE  
Sbjct: 181  SFKGTTEHAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVL 240

Query: 894  VPFDLLDDDDPWIRTTDFTICGAIGRCNIYRVLIQPRHGIRLRKAMQYLKERRVFFKDLP 1073
            VPFDLLDDDDPWIRTTDFT  GAIGRCN YRV I PRHG +L++A+ +L+ERRV    L 
Sbjct: 241  VPFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQEDCLR 300

Query: 1074 RRIKIQDEPDFGMPMHDQLFCIQSKEGISFKILFLVNAVLHKGIFNQYTLSDEFFNLMKS 1253
            R + +  EP++ MPM D  FCI  +EG+ F ++FLVNAV+HKGIFNQ+ LSD FF+L+++
Sbjct: 301  RPLHVTAEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRN 360

Query: 1254 QKEEVSIAALKHICSTKRPEFNAYERMKNVLDWLLKNPTLLRT-RELDDIVEVRRLIITP 1430
            Q  +V+IAAL+HICS K P F+A++R+K V  WLLKNP L R+ ++LDDIVE+RRL ITP
Sbjct: 361  QPLDVNIAALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAITP 420

Query: 1431 TKAYCLPPEVELSNRVLRNYKSFADRFLRVTFMDEGMQMLNKSAVTYYPASIVIDITSNL 1610
            T+AYCLPPEVELSNRVLR YK  AD+FLRVTFMDEG+Q +N + +TYY A IV DITSN 
Sbjct: 421  TRAYCLPPEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYYCAPIVRDITSNS 480

Query: 1611 ISQKTNVFRRVRDIVSNGFYLCGRKYSFLAFSANQLRDRSAWFFAENQNITVAAILNWMG 1790
             SQKT +F+RV+ I+++GFYLCGRKYSFLAFS+NQLRDRSAWFFAE+   +V+ I NWMG
Sbjct: 481  FSQKTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKTSVSKIRNWMG 540

Query: 1791 HFTIRNIAKCAARMGQCFSSTYATIKVPHDNVDFELPDIKRNNYDFSDGIGMITPDLAME 1970
             FT RNIAKCAARMGQCFSSTYAT++VP      +LPDI+RNNY FSDGIGMITPDLA E
Sbjct: 541  KFTNRNIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFSDGIGMITPDLAKE 600

Query: 1971 VAERLQLKVNPPCAYQIRYAGCKGVVACWPVRKCGIRLSLRQSMNKFVSKHDILEVCSWT 2150
            VAE+L+L+VNPPCAYQIRYAGCKGVVACWP    GIRLSLR SMNKF S H  LE+CSWT
Sbjct: 601  VAEKLKLEVNPPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFHSNHTTLEICSWT 660

Query: 2151 RFQPGFLNRQIITLLSALNVSDEIFWNMQESMISKLNQMLTSVEIAYDVVTSSCAEEGNT 2330
            RFQPGFLNRQIITLLS L+V DEIFW MQ  M+SKLNQM    ++A+DVVT+SCAE+GNT
Sbjct: 661  RFQPGFLNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVTASCAEQGNT 720

Query: 2331 AAIMLSAGFKPHNEPHLRGMLTSIRAAQFGDLREKARIFVSSGRWLMGCLDELAVLEQGQ 2510
            AAIMLSAGF P  EPHL GMLT IRAAQ   LREK RIFV SGRWLMGCLDEL VLE GQ
Sbjct: 721  AAIMLSAGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEHGQ 780

Query: 2511 CFVQVSNPSIKNCFLNHGSQFLETKNDLQVIKGFVVVAKNPCLHPGDVRILEAVDVPSLH 2690
            CF+QVSNPS+++CF  HGS+F E+K  LQV+KG VVVAKNPCLHPGD+RILEAVD P LH
Sbjct: 781  CFIQVSNPSLESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIRILEAVDAPELH 840

Query: 2691 HLFDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDEYLIPPSKRSWLPMQYEPSEVREIP 2870
            HL DCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDE LIPPSKRSWLPMQY+ +E +++ 
Sbjct: 841  HLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWLPMQYDAAEAKQLN 900

Query: 2871 GLVQTKDITRFFATNIVNENLGTICNAHVVHADNSEYGAMDENCIKLAELAAEAVDFPKT 3050
              V  +DI  FFA N+VNENLG ICNAHVVHAD SEYGA+DENCIKLAELAA AVDFPKT
Sbjct: 901  RPVNHQDIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENCIKLAELAATAVDFPKT 960

Query: 3051 GKIVNMPSHLKPKLYPDFMGKEDFLSYKSTKILGRLYRKIKDDY------DTELTAPTEV 3212
            GK+V MP HLKPKLYPDFMGKED+ SY S KILGRLYR++KDDY      D +    +E+
Sbjct: 961  GKLVTMPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKDDYNDDDDDDDDAATSSEL 1020

Query: 3213 SFLPKEIPYDADLETPGSETFITEAWGFKCSHDEQLNGLLGQYKVNKEEEVAVGHIWSMP 3392
            + +  +IPYD DLE  GS  +I +AW  KCS+D QL GLL QYKV +EEEV  GHIWSMP
Sbjct: 1021 NLVRGDIPYDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTGHIWSMP 1080

Query: 3393 KYTSKKQGELKERLKNAYNALKKEFRRNFEHLGSDFDDLSDNEKNAAYEQKASAWYHVTY 3572
            K  S+KQGELKERLK +Y++LKKEFR+ FE + SDF+ L+++EKN  YEQKASAWY V Y
Sbjct: 1081 KCNSRKQGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASAWYQVAY 1140

Query: 3573 HPKWVKMSLDVQDPNVFGNGTVMLSFPWIAADYLARIKIK 3692
            HPKWV  S+++Q+P+  G  + MLSF WIAADYLARIKI+
Sbjct: 1141 HPKWVNKSMELQEPDAAGCAS-MLSFAWIAADYLARIKIR 1179


>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score = 1631 bits (4224), Expect = 0.0
 Identities = 797/1176 (67%), Positives = 951/1176 (80%), Gaps = 5/1176 (0%)
 Frame = +3

Query: 183  MGSEDKEKDLVVTQISVGGFDDSIKAKNLLEYFEENVGLVWRCRLKTSTTPSDSYPEFEI 362
            MGSE  EKDLVVTQISVGGFD+ + AK L EY EE VG VWRCRLK S+TP DSYP F++
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTFDV 60

Query: 363  DTTKLKR-NTYEKVVPHAFVHFAIPDSARSALDAAGRGDLILNDRPLMVNLGPENTHRMN 539
            D  +++R   YEKVVPHAFVHFA  +SA+ AL AAG  +LIL  +PL+V+LGPEN +R+N
Sbjct: 61   DAERVQRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 540  QRRRNKAPFKLPDVCIEIGTWVSEDEFFVGWRSPPTGVDFVVDPFSGHCKFLFTKDTAFG 719
            QRRR   PFK  DV IE+G  VS+D+F VGWR P TGVDF+VDPF+G CK LFTKDTAF 
Sbjct: 121  QRRRTTMPFKFSDVSIEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGACKILFTKDTAFS 180

Query: 720  -RGGRAEAVIKCNFKVEFMARDIRWMNNYSESSKLILLMCLESAPSIYYRTADDDIEESV 896
             RG    A+IKCNFK+EF+ R+I  +    + + L++L+ L S+P ++YRTADDDIEESV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 897  PFDLLDDDDPWIRTTDFTICGAIGRCNIYRVLIQPRHGIRLRKAMQYLKERRVFFKDLPR 1076
             FDLLDDDD WIRTTD T  GAIGRCN YR+ I+PR+G    KAM Y    RV   ++  
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 1077 R--IKIQDEPDFGMPMHDQLFCIQSKEGISFKILFLVNAVLHKGIFNQYTLSDEFFNLMK 1250
            R  ++++DEPDFG+ M D  FC Q+ EGISFK++FLVNAVLHKGI NQ+ +++EFF L++
Sbjct: 301  RKMLRVRDEPDFGVSMSDPFFCFQN-EGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 1251 SQKEEVSIAALKHICSTKRPEFNAYERMKNVLDWLLKNPTLL-RTRELDDIVEVRRLIIT 1427
            S +EEV++AALKH+ S K P  +A +++  +  WLLKNP LL RT ELDDIVEVRRL+IT
Sbjct: 360  SHQEEVNLAALKHMFSYKWPVNDAIQKLVGIRKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 1428 PTKAYCLPPEVELSNRVLRNYKSFADRFLRVTFMDEGMQMLNKSAVTYYPASIVIDITSN 1607
            PTKAYCLPP VELSNRVLRNYK  ADRFLRVTFMDEGM+ LN++ +TYY A+IV +ITSN
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 1608 LISQKTNVFRRVRDIVSNGFYLCGRKYSFLAFSANQLRDRSAWFFAENQNITVAAILNWM 1787
               Q+T +F+RV+ I+S GF+LCGRKYSFLAFSANQLRDRSAWFFAE+  I V  I++WM
Sbjct: 480  SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 1788 GHFTIRNIAKCAARMGQCFSSTYATIKVPHDNVDFELPDIKRNNYDFSDGIGMITPDLAM 1967
            G F+ RN+AKCAARMGQCFSSTYAT++VP   V+ ELPDI+RN Y FSDGIGMI+ DLA+
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAV 599

Query: 1968 EVAERLQLKVNPPCAYQIRYAGCKGVVACWPVRKCGIRLSLRQSMNKFVSKHDILEVCSW 2147
            EVAE+L L VNPP AYQIRYAGCKGVVACWP +  GIRLSLR SM KF S H ILE+CSW
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 2148 TRFQPGFLNRQIITLLSALNVSDEIFWNMQESMISKLNQMLTSVEIAYDVVTSSCAEEGN 2327
            TRFQPGFLNRQI+TLLS+L+V D IFW MQ+ MIS L++ML   ++A+DV+T+SCAE GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 2328 TAAIMLSAGFKPHNEPHLRGMLTSIRAAQFGDLREKARIFVSSGRWLMGCLDELAVLEQG 2507
            TAAIMLSAGFKP +EPHLRGML+SIRA+Q GDLR KARIFV SGRWLMGCLDEL  LEQG
Sbjct: 720  TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 2508 QCFVQVSNPSIKNCFLNHGSQFLETKNDLQVIKGFVVVAKNPCLHPGDVRILEAVDVPSL 2687
            QCF+QVS+PS++NCF+ HG +F + K +LQV+KG VV+AKNPCLHPGDVRILEAVDVP L
Sbjct: 780  QCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGL 839

Query: 2688 HHLFDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDEYLIPPSKRSWLPMQYEPSEVREI 2867
            HHL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDE LIPPSK+SW+PM YEP+EV+++
Sbjct: 840  HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQM 899

Query: 2868 PGLVQTKDITRFFATNIVNENLGTICNAHVVHADNSEYGAMDENCIKLAELAAEAVDFPK 3047
               V   DI  FF+ N+V E+LG ICNAHVVHAD SE+GA+DE C+KLAELAA AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 3048 TGKIVNMPSHLKPKLYPDFMGKEDFLSYKSTKILGRLYRKIKDDYDTELTAPTEVSFLPK 3227
            TGK+V MP  LKPK+YPDFMGKE+F SYKS KILG+LYR++KD  DTE      +  +P 
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPN 1019

Query: 3228 EIPYDADLETPGSETFITEAWGFKCSHDEQLNGLLGQYKVNKEEEVAVGHIWSMPKYTSK 3407
            +IPYD+ LE PGS  FI +AW  KCS+D QL+GLLGQYKVN+EEEV  GHIWSMPKY++K
Sbjct: 1020 DIPYDSSLEIPGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 3408 KQGELKERLKNAYNALKKEFRRNFEHLGSDFDDLSDNEKNAAYEQKASAWYHVTYHPKWV 3587
            KQGELKERLK+AYN L+KEFR  FE +  DFD L D+EKN  YE+KASAWY VTY+P WV
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139

Query: 3588 KMSLDVQDPNVFGNGTVMLSFPWIAADYLARIKIKH 3695
              SL++Q P+   + TVMLSF WIAADYLARIKI+H
Sbjct: 1140 ARSLELQLPDAV-SSTVMLSFAWIAADYLARIKIRH 1174