BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00004410
         (822 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24452.3| unnamed protein product [Vitis vinifera]              334   2e-89
ref|XP_004146207.1| PREDICTED: pentatricopeptide repeat-containi...   310   3e-82
ref|XP_003520093.1| PREDICTED: pentatricopeptide repeat-containi...   291   1e-76
gb|ACU21153.1| unknown [Glycine max]                                  291   2e-76
ref|XP_003629226.1| Pentatricopeptide repeat-containing protein ...   288   1e-75

>emb|CBI24452.3| unnamed protein product [Vitis vinifera]
          Length = 503

 Score =  334 bits (856), Expect = 2e-89
 Identities = 156/258 (60%), Positives = 204/258 (79%), Gaps = 3/258 (1%)
 Frame = -1

Query: 789 YHMIISAHTTNAYFDQALALFHH---IHNSLLYQPHHATLVAVLPACTQLAAIQDGLWIH 619
           ++ +IS +  N   D AL LFH+   +    +Y P  ATLVA+LPAC Q AAIQ+GLWIH
Sbjct: 176 WNSMISGYAINGCADDALVLFHNMLQVQGDTVYAPDSATLVAILPACAQAAAIQEGLWIH 235

Query: 618 TYILKTGMEIDAALGSGLIAMYGNCGRLNDARRIFERISNRTIVVWNAIIRCCGMHGQAD 439
           +Y++K+G+E+DAALGSGLIAMY NCG LN AR +F+RI ++ IVVWNAIIRC GMHG AD
Sbjct: 236 SYVIKSGIELDAALGSGLIAMYANCGLLNSARDVFDRIDDKNIVVWNAIIRCYGMHGHAD 295

Query: 438 EAVELFSRMVEDGLCPDALIFIALLSTCSHAGMLSTGRKLFQIMEDYGVERRNEHYACMV 259
           EA+++FS +++ GL PD +IF+ LLS  SHAGM++ G +LF+ M DYGVE+ +EHYA +V
Sbjct: 296 EALKMFSGLIDSGLHPDGVIFLCLLSAFSHAGMVAEGMELFEKMGDYGVEKSSEHYASVV 355

Query: 258 DLLGRAGLFSEAMELIKTMPLQPGKDVYGALLGACRIHNNIELAEQVSKKLFLLDPNNAS 79
           D+LGRAG   EA+E +K MP+QPGKDVYGALLGACRIHNNIELAE++++KLF+LDP+NA 
Sbjct: 356 DILGRAGFLHEAVEFVKNMPVQPGKDVYGALLGACRIHNNIELAEEIAEKLFVLDPDNAG 415

Query: 78  RHITMANMYEDTGRLADA 25
           R+I +  MYED G+  +A
Sbjct: 416 RYIILVKMYEDAGKWENA 433



 Score = 89.4 bits (220), Expect = 9e-16
 Identities = 51/197 (25%), Positives = 101/197 (51%), Gaps = 4/197 (2%)
 Frame = -1

Query: 792 IYHMIISAHTTNAYFDQALALFHHIHNSLLYQPHHATLVAVLPACTQLAAIQDGLWIHTY 613
           +++ II  +     F +AL ++ ++  S +    + T   VL AC  +   + G  IH +
Sbjct: 74  VWNTIIQGYANLGPFMEALNIYEYMRCSGVAANRY-TFPFVLKACGAMKDGKKGQAIHGH 132

Query: 612 ILKTGMEIDAALGSGLIAMYGNCGRLNDARRIFERISNRTIVVWNAIIRCCGMHGQADEA 433
           ++K G+++D  +G+ L+A Y  C  +  +RR+F+ IS + IV WN++I    ++G AD+A
Sbjct: 133 VVKHGLDLDLFVGNALVAFYAKCNEIGASRRVFDMISEKDIVTWNSMISGYAINGCADDA 192

Query: 432 VELFSRMV----EDGLCPDALIFIALLSTCSHAGMLSTGRKLFQIMEDYGVERRNEHYAC 265
           + LF  M+    +    PD+   +A+L  C+ A  +  G  +   +   G+E      + 
Sbjct: 193 LVLFHNMLQVQGDTVYAPDSATLVAILPACAQAAAIQEGLWIHSYVIKSGIELDAALGSG 252

Query: 264 MVDLLGRAGLFSEAMEL 214
           ++ +    GL + A ++
Sbjct: 253 LIAMYANCGLLNSARDV 269


>ref|XP_004146207.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 480

 Score =  310 bits (793), Expect = 3e-82
 Identities = 144/256 (56%), Positives = 194/256 (75%), Gaps = 1/256 (0%)
 Frame = -1

Query: 789 YHMIISAHTTNAYFDQALALFHH-IHNSLLYQPHHATLVAVLPACTQLAAIQDGLWIHTY 613
           ++ +I  +T N   D+A+  FH  +HN     P  ATLVA+LPAC   +A Q G W+H+Y
Sbjct: 164 WNSMIVGYTLNGKEDEAIMFFHAMLHNQADCTPDSATLVAILPACATKSASQVGFWVHSY 223

Query: 612 ILKTGMEIDAALGSGLIAMYGNCGRLNDARRIFERISNRTIVVWNAIIRCCGMHGQADEA 433
           ++KTG+E+ A LGS LI MYGNCG +N AR +F+RI ++ ++VW+AIIRC GMHG ADEA
Sbjct: 224 VIKTGIEVGAPLGSCLICMYGNCGHVNIARDVFDRIDDKNVIVWSAIIRCYGMHGFADEA 283

Query: 432 VELFSRMVEDGLCPDALIFIALLSTCSHAGMLSTGRKLFQIMEDYGVERRNEHYACMVDL 253
             +F R+ E G+ PD LIF+ LLS CSHAG+++ G ++++ ME YG+ER++ HYACMVDL
Sbjct: 284 FNMFRRLEEAGVKPDGLIFLNLLSACSHAGLVAKGHEIYEKMEAYGLERKDNHYACMVDL 343

Query: 252 LGRAGLFSEAMELIKTMPLQPGKDVYGALLGACRIHNNIELAEQVSKKLFLLDPNNASRH 73
           LGRAG   +A+E I+ MP+Q GKDVYGALLGACRIHNN+ELA++V +KLF+LDP  ASR+
Sbjct: 344 LGRAGFLEQAVEFIEGMPVQAGKDVYGALLGACRIHNNLELAKEVGEKLFILDPEKASRY 403

Query: 72  ITMANMYEDTGRLADA 25
           +T+A MYED G+  DA
Sbjct: 404 VTLATMYEDAGQWEDA 419



 Score = 76.3 bits (186), Expect = 8e-12
 Identities = 42/149 (28%), Positives = 76/149 (51%), Gaps = 2/149 (1%)
 Frame = -1

Query: 678 VAVLPACTQLAAIQDGLWIHTYILKTGMEIDAALGSGLIAMYGNCGRLNDARRIFERISN 499
           V V  AC  +     G  +H +++K G+++D  +G+ LIA Y  C  +  AR++F+ +S 
Sbjct: 99  VFVWNACGAMKNSDKGEIVHGHVVKCGLDLDLFVGNALIAFYSKCQDVETARKVFDDMSL 158

Query: 498 RTIVVWNAIIRCCGMHGQADEAVELFSRMVED--GLCPDALIFIALLSTCSHAGMLSTGR 325
           R IV WN++I    ++G+ DEA+  F  M+ +     PD+   +A+L  C+       G 
Sbjct: 159 RDIVSWNSMIVGYTLNGKEDEAIMFFHAMLHNQADCTPDSATLVAILPACATKSASQVGF 218

Query: 324 KLFQIMEDYGVERRNEHYACMVDLLGRAG 238
            +   +   G+E      +C++ + G  G
Sbjct: 219 WVHSYVIKTGIEVGAPLGSCLICMYGNCG 247


>ref|XP_003520093.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 503

 Score =  291 bits (745), Expect = 1e-76
 Identities = 140/256 (54%), Positives = 187/256 (73%), Gaps = 1/256 (0%)
 Frame = -1

Query: 789 YHMIISAHTTNAYFDQALALFHH-IHNSLLYQPHHATLVAVLPACTQLAAIQDGLWIHTY 613
           ++ +IS +T N Y D A+ LF+  + +  +  P HAT V VLPA  Q A I  G WIH Y
Sbjct: 187 WNSMISGYTVNGYVDDAILLFYDMLRDESVGGPDHATFVTVLPAFAQAADIHAGYWIHCY 246

Query: 612 ILKTGMEIDAALGSGLIAMYGNCGRLNDARRIFERISNRTIVVWNAIIRCCGMHGQADEA 433
           I+KT M +D+A+G+GLI++Y NCG +  AR IF+RIS+R+++VW+AIIRC G HG A EA
Sbjct: 247 IVKTRMGLDSAVGTGLISLYSNCGYVRMARAIFDRISDRSVIVWSAIIRCYGTHGLAQEA 306

Query: 432 VELFSRMVEDGLCPDALIFIALLSTCSHAGMLSTGRKLFQIMEDYGVERRNEHYACMVDL 253
           + LF ++V  GL PD ++F+ LLS CSHAG+L  G  LF  ME YGV +   HYAC+VDL
Sbjct: 307 LALFRQLVGAGLRPDGVVFLCLLSACSHAGLLEQGWHLFNAMETYGVAKSEAHYACIVDL 366

Query: 252 LGRAGLFSEAMELIKTMPLQPGKDVYGALLGACRIHNNIELAEQVSKKLFLLDPNNASRH 73
           LGRAG   +A+E I++MP+QPGK++YGALLGACRIH N+ELAE  ++KLF+LDP+NA R+
Sbjct: 367 LGRAGDLEKAVEFIQSMPIQPGKNIYGALLGACRIHKNMELAELAAEKLFVLDPDNAGRY 426

Query: 72  ITMANMYEDTGRLADA 25
           + +A MYED  R  DA
Sbjct: 427 VILAQMYEDAERWQDA 442



 Score = 75.9 bits (185), Expect = 1e-11
 Identities = 59/221 (26%), Positives = 97/221 (43%), Gaps = 40/221 (18%)
 Frame = -1

Query: 696 PHHATLVAVLPACTQLAAIQDGLWIHTYILKTGMEIDAALGSGLIAMYGNCGRLNDARRI 517
           P++ T   VL AC    A + G  IH + +K GM++D  +G+ L+A Y  C  +  +R++
Sbjct: 116 PNYYTYPFVLKACGAEGASKKGRVIHGHAVKCGMDLDLFVGNALVAFYAKCQDVEVSRKV 175

Query: 516 FERISNRTIVVWNAIIRCCGMHGQADEAVELFSRMVEDGLC--PDALIFI---------- 373
           F+ I +R IV WN++I    ++G  D+A+ LF  M+ D     PD   F+          
Sbjct: 176 FDEIPHRDIVSWNSMISGYTVNGYVDDAILLFYDMLRDESVGGPDHATFVTVLPAFAQAA 235

Query: 372 -------------------------ALLSTCSHAGMLSTGRKLFQIMEDYGVERRNEHYA 268
                                     L+S  S+ G +   R +F  + D  V      ++
Sbjct: 236 DIHAGYWIHCYIVKTRMGLDSAVGTGLISLYSNCGYVRMARAIFDRISDRSV----IVWS 291

Query: 267 CMVDLLGRAGLFSEAMELIKTM---PLQPGKDVYGALLGAC 154
            ++   G  GL  EA+ L + +    L+P   V+  LL AC
Sbjct: 292 AIIRCYGTHGLAQEALALFRQLVGAGLRPDGVVFLCLLSAC 332


>gb|ACU21153.1| unknown [Glycine max]
          Length = 529

 Score =  291 bits (744), Expect = 2e-76
 Identities = 139/256 (54%), Positives = 187/256 (73%), Gaps = 1/256 (0%)
 Frame = -1

Query: 789 YHMIISAHTTNAYFDQALALFHH-IHNSLLYQPHHATLVAVLPACTQLAAIQDGLWIHTY 613
           ++ ++S +T N Y D A+ LF+  + +  +  P HAT V VLPA  Q A I  G WIH Y
Sbjct: 187 WNSMVSGYTVNGYVDDAILLFYDMLRDESVGGPDHATFVTVLPAFAQAADIHAGYWIHCY 246

Query: 612 ILKTGMEIDAALGSGLIAMYGNCGRLNDARRIFERISNRTIVVWNAIIRCCGMHGQADEA 433
           I+KT M +D+A+G+GLI++Y NCG +  AR IF+RIS+R+++VW+AIIRC G HG A EA
Sbjct: 247 IVKTRMGLDSAVGTGLISLYSNCGYVRMARAIFDRISDRSVIVWSAIIRCYGTHGLAQEA 306

Query: 432 VELFSRMVEDGLCPDALIFIALLSTCSHAGMLSTGRKLFQIMEDYGVERRNEHYACMVDL 253
           + LF ++V  GL PD ++F+ LLS CSHAG+L  G  LF  ME YGV +   HYAC+VDL
Sbjct: 307 LALFRQLVGAGLRPDGVVFLCLLSACSHAGLLEQGWHLFNAMETYGVAKSEAHYACIVDL 366

Query: 252 LGRAGLFSEAMELIKTMPLQPGKDVYGALLGACRIHNNIELAEQVSKKLFLLDPNNASRH 73
           LGRAG   +A+E I++MP+QPGK++YGALLGACRIH N+ELAE  ++KLF+LDP+NA R+
Sbjct: 367 LGRAGDLEKAVEFIQSMPIQPGKNIYGALLGACRIHKNMELAELAAEKLFVLDPDNAGRY 426

Query: 72  ITMANMYEDTGRLADA 25
           + +A MYED  R  DA
Sbjct: 427 VILAQMYEDAERWLDA 442



 Score = 77.8 bits (190), Expect = 3e-12
 Identities = 63/254 (24%), Positives = 113/254 (44%), Gaps = 43/254 (16%)
 Frame = -1

Query: 786 HMIISAHTTNAYFDQALALFHHIHNSLLYQ---PHHATLVAVLPACTQLAAIQDGLWIHT 616
           +++I  +     F +AL     +H+++ ++   P++ T   VL AC    A + G  IH 
Sbjct: 87  NVVIKVYANADPFGEALK----VHDAMRWRGITPNYYTYPFVLKACGAEGASKKGRVIHE 142

Query: 615 YILKTGMEIDAALGSGLIAMYGNCGRLNDARRIFERISNRTIVVWNAIIRCCGMHGQADE 436
           + +K GM++D  +G+ L+A Y  C  +  +R++F+ I +R IV WN+++    ++G  D+
Sbjct: 143 HAVKCGMDLDLFVGNALVAFYAKCQDVEVSRKVFDEIPHRDIVSWNSMVSGYTVNGYVDD 202

Query: 435 AVELFSRMVEDGLC--PDALIFI-----------------------------------AL 367
           A+ LF  M+ D     PD   F+                                    L
Sbjct: 203 AILLFYDMLRDESVGGPDHATFVTVLPAFAQAADIHAGYWIHCYIVKTRMGLDSAVGTGL 262

Query: 366 LSTCSHAGMLSTGRKLFQIMEDYGVERRNEHYACMVDLLGRAGLFSEAMELIKTM---PL 196
           +S  S+ G +   R +F  + D  V      ++ ++   G  GL  EA+ L + +    L
Sbjct: 263 ISLYSNCGYVRMARAIFDRISDRSV----IVWSAIIRCYGTHGLAQEALALFRQLVGAGL 318

Query: 195 QPGKDVYGALLGAC 154
           +P   V+  LL AC
Sbjct: 319 RPDGVVFLCLLSAC 332


>ref|XP_003629226.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355523248|gb|AET03702.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 510

 Score =  288 bits (736), Expect = 1e-75
 Identities = 141/256 (55%), Positives = 187/256 (73%), Gaps = 1/256 (0%)
 Frame = -1

Query: 789 YHMIISAHTTNAYFDQALALF-HHIHNSLLYQPHHATLVAVLPACTQLAAIQDGLWIHTY 613
           ++ ++S +  N Y D+A+ LF   + +  +  P +ATLV VLPA  + A I  G WIH Y
Sbjct: 189 WNSMMSGYIANGYVDEAVMLFCDMLRDDGIGFPDNATLVTVLPAFAEKADIHAGYWIHCY 248

Query: 612 ILKTGMEIDAALGSGLIAMYGNCGRLNDARRIFERISNRTIVVWNAIIRCCGMHGQADEA 433
           I+KTGM++D A+G GLI +Y NCG +  A+ +F++I +R ++VW+AIIRC GMHG A EA
Sbjct: 249 IVKTGMKLDPAVGCGLITLYSNCGYIRMAKAVFDQIPDRNVIVWSAIIRCYGMHGFAQEA 308

Query: 432 VELFSRMVEDGLCPDALIFIALLSTCSHAGMLSTGRKLFQIMEDYGVERRNEHYACMVDL 253
           + +F ++VE GL  D ++F++LLS CSHAGM   G  LFQ ME YGV +   HYACMVDL
Sbjct: 309 LSMFRQLVELGLHLDGIVFLSLLSACSHAGMHEEGWHLFQTMETYGVVKGEAHYACMVDL 368

Query: 252 LGRAGLFSEAMELIKTMPLQPGKDVYGALLGACRIHNNIELAEQVSKKLFLLDPNNASRH 73
           LGRAG   +AMELI++MP+QPGK+VYGALLGA RIH NIELAE  ++KLF+LDPNNA R+
Sbjct: 369 LGRAGNLEKAMELIQSMPIQPGKNVYGALLGASRIHKNIELAELAAEKLFVLDPNNAGRY 428

Query: 72  ITMANMYEDTGRLADA 25
           + +A MYED GR  DA
Sbjct: 429 VILAQMYEDEGRWKDA 444



 Score = 69.3 bits (168), Expect = 1e-09
 Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 16/173 (9%)
 Frame = -1

Query: 789 YHMIISAHTTNAYFDQALALFHHIHNSLLYQ---PHHATLVAVLPACTQLAAIQDGLWIH 619
           ++ +I  +     F +AL    H++N++      P+  T   VL AC        G  IH
Sbjct: 88  WNNVIKGYANMGPFAEAL----HVYNAMRLSGAAPNRYTYPFVLKACGAERDCLKGRIIH 143

Query: 618 TYILKTGMEIDAALGSGLIAMYGNCGRLNDARRIFERISNRTIVVWNAIIRCCGMHGQAD 439
             ++K G+E D  +G+  +A Y  C  +  +R++F+ +  R IV WN+++     +G  D
Sbjct: 144 GNVVKCGLEFDLFVGNAFVAFYAKCKEIEASRKVFDEMLERDIVSWNSMMSGYIANGYVD 203

Query: 438 EAVELFSRMV-EDGL-CPDALIFIALLSTCS-----HAG------MLSTGRKL 319
           EAV LF  M+ +DG+  PD    + +L   +     HAG      ++ TG KL
Sbjct: 204 EAVMLFCDMLRDDGIGFPDNATLVTVLPAFAEKADIHAGYWIHCYIVKTGMKL 256