BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00004261
         (591 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002304926.1| predicted protein [Populus trichocarpa] gi|2...   304   6e-81
ref|XP_002518515.1| ribosomal pseudouridine synthase, putative [...   300   9e-80
ref|XP_003541622.1| PREDICTED: RNA pseudourine synthase 6, chlor...   300   1e-79
ref|XP_003547248.1| PREDICTED: RNA pseudourine synthase 6, chlor...   298   6e-79
ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chlor...   294   7e-78

>ref|XP_002304926.1| predicted protein [Populus trichocarpa] gi|222847890|gb|EEE85437.1|
           predicted protein [Populus trichocarpa]
          Length = 470

 Score =  304 bits (779), Expect = 6e-81
 Identities = 133/186 (71%), Positives = 160/186 (86%)
 Frame = -2

Query: 590 IREKMVQKLYLALTAAPVPIGVINHYMRPINIAPRLVSEEFTKRWYLCQLEVLECKMVPW 411
           IREK V+KLY+AL A+PVPIGV+NHYMRPIN+APRLVSEEF K W+LCQLEV+ECK VPW
Sbjct: 281 IREKTVKKLYIALAASPVPIGVVNHYMRPINMAPRLVSEEFIKGWHLCQLEVMECKRVPW 340

Query: 410 PSAEIMDKYSVEDCGWPSQEFAYECRIRLLTGRTHQIRAQLAACGAPILGDTIYMPAASS 231
           P A + +KY V+DCGWPS++ AYEC+I LLTGRTHQIRAQLAA GAP++GD++YMPAA +
Sbjct: 341 PDAVMEEKYCVQDCGWPSKDHAYECKINLLTGRTHQIRAQLAALGAPLVGDSMYMPAAVA 400

Query: 230 EISRPGVNPFGKCRKQYASETEKEVAIEDWIACHGKEPKIAIGLQACQISWDDEEHFYEA 51
           E+  PG NPFGK +KQY SE +K +A+E+W+ CHGKEP +AIGLQACQISWDD +H Y A
Sbjct: 401 EMVSPGCNPFGKYKKQYTSEDDKAIAVEEWVLCHGKEPNVAIGLQACQISWDDGKHIYNA 460

Query: 50  RSPWWR 33
            SPWWR
Sbjct: 461 GSPWWR 466


>ref|XP_002518515.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223542360|gb|EEF43902.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 476

 Score =  300 bits (769), Expect = 9e-80
 Identities = 131/186 (70%), Positives = 164/186 (88%)
 Frame = -2

Query: 590 IREKMVQKLYLALTAAPVPIGVINHYMRPINIAPRLVSEEFTKRWYLCQLEVLECKMVPW 411
           IREK V+KLYLAL A+PVP+GVI +YMRP+NIAPRL+SEEF   W+LCQLEVLEC+ VPW
Sbjct: 287 IREKKVKKLYLALAASPVPVGVIKNYMRPVNIAPRLLSEEFVNGWHLCQLEVLECRKVPW 346

Query: 410 PSAEIMDKYSVEDCGWPSQEFAYECRIRLLTGRTHQIRAQLAACGAPILGDTIYMPAASS 231
           P A I +KYSVEDCGWPS++FAYEC+I LLTGRTHQIRAQLAA GAP++GD++YMPAA +
Sbjct: 347 PDAAIEEKYSVEDCGWPSKDFAYECKINLLTGRTHQIRAQLAASGAPLVGDSMYMPAAVA 406

Query: 230 EISRPGVNPFGKCRKQYASETEKEVAIEDWIACHGKEPKIAIGLQACQISWDDEEHFYEA 51
           E++ PG+NPFGK RKQY +E+++ +A+ +W+A HGKEPK+AIGLQAC+ISWD+ +H Y+A
Sbjct: 407 EMANPGLNPFGKHRKQYTNESDESMAVAEWVAQHGKEPKVAIGLQACEISWDEGKHIYKA 466

Query: 50  RSPWWR 33
            SPWWR
Sbjct: 467 GSPWWR 472


>ref|XP_003541622.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Glycine
           max]
          Length = 473

 Score =  300 bits (768), Expect = 1e-79
 Identities = 129/186 (69%), Positives = 161/186 (86%)
 Frame = -2

Query: 590 IREKMVQKLYLALTAAPVPIGVINHYMRPINIAPRLVSEEFTKRWYLCQLEVLECKMVPW 411
           IREK V+KLYLAL A+P+P G+I HYMRPIN+APRL+SE+F K W+LCQLEVLEC+ +PW
Sbjct: 287 IREKKVKKLYLALAASPLPTGIITHYMRPINMAPRLISEDFIKGWHLCQLEVLECRKIPW 346

Query: 410 PSAEIMDKYSVEDCGWPSQEFAYECRIRLLTGRTHQIRAQLAACGAPILGDTIYMPAASS 231
           P+  I DKY VEDCGWPSQ++AYEC+I LLTG+THQIRAQ AA  AP++GD++YMPAA +
Sbjct: 347 PTTAIQDKYCVEDCGWPSQDYAYECKINLLTGKTHQIRAQFAAYKAPLIGDSMYMPAAIA 406

Query: 230 EISRPGVNPFGKCRKQYASETEKEVAIEDWIACHGKEPKIAIGLQACQISWDDEEHFYEA 51
           ++S PG+NPFGK +K ++SE+EKE A+ +W+A HGKEP +AIGLQACQISWDD+EHFYEA
Sbjct: 407 DVSNPGLNPFGKYKKDFSSESEKETAVVNWMAQHGKEPSVAIGLQACQISWDDDEHFYEA 466

Query: 50  RSPWWR 33
             PWWR
Sbjct: 467 GLPWWR 472


>ref|XP_003547248.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Glycine
           max]
          Length = 473

 Score =  298 bits (762), Expect = 6e-79
 Identities = 129/186 (69%), Positives = 159/186 (85%)
 Frame = -2

Query: 590 IREKMVQKLYLALTAAPVPIGVINHYMRPINIAPRLVSEEFTKRWYLCQLEVLECKMVPW 411
           IREK V+K YLAL A P+P G+I HYMRPI++APRL+SE+F K W+LCQLEVLEC+ VPW
Sbjct: 287 IREKKVKKFYLALAAFPLPTGIITHYMRPIDMAPRLISEDFIKGWHLCQLEVLECRKVPW 346

Query: 410 PSAEIMDKYSVEDCGWPSQEFAYECRIRLLTGRTHQIRAQLAACGAPILGDTIYMPAASS 231
           P+  I DKY +EDCGWPSQ++AYEC+I LLTG+THQIRAQ AA  AP++GD++YMPAA +
Sbjct: 347 PATAIQDKYCIEDCGWPSQDYAYECKINLLTGKTHQIRAQFAAYKAPLIGDSMYMPAAIA 406

Query: 230 EISRPGVNPFGKCRKQYASETEKEVAIEDWIACHGKEPKIAIGLQACQISWDDEEHFYEA 51
            +S PG+NPFGK +K ++SE+EKE A+ +WIA HGKEP +AIGLQACQISWDD+EHFYEA
Sbjct: 407 NMSNPGLNPFGKYKKDFSSESEKETAVVNWIAQHGKEPSVAIGLQACQISWDDDEHFYEA 466

Query: 50  RSPWWR 33
            SPWWR
Sbjct: 467 SSPWWR 472


>ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic [Vitis
           vinifera] gi|302144082|emb|CBI23187.3| unnamed protein
           product [Vitis vinifera]
          Length = 472

 Score =  294 bits (753), Expect = 7e-78
 Identities = 130/185 (70%), Positives = 158/185 (85%)
 Frame = -2

Query: 590 IREKMVQKLYLALTAAPVPIGVINHYMRPINIAPRLVSEEFTKRWYLCQLEVLECKMVPW 411
           IREK V+KLY AL AAP+PIG++ HYMRP+NIAPRL+SE+F K WYLCQLEVLECK VPW
Sbjct: 287 IREKKVKKLYRALAAAPMPIGIVTHYMRPVNIAPRLISEDFIKGWYLCQLEVLECKEVPW 346

Query: 410 PSAEIMDKYSVEDCGWPSQEFAYECRIRLLTGRTHQIRAQLAACGAPILGDTIYMPAASS 231
           PS  I +KY +ED GWP +  A++C+I LLTGRTHQIRAQLAACGAPI+GD++YMPAA +
Sbjct: 347 PSTLIEEKYCIEDRGWPLKNSAFKCKINLLTGRTHQIRAQLAACGAPIVGDSMYMPAAIA 406

Query: 230 EISRPGVNPFGKCRKQYASETEKEVAIEDWIACHGKEPKIAIGLQACQISWDDEEHFYEA 51
           EI+ PG+NPFGK +K+Y +E ++E A+ +WIA HGKEP +AIGLQACQISWDD EHFY+A
Sbjct: 407 EITSPGLNPFGKYKKKYTTENDRETAVAEWIAQHGKEPGVAIGLQACQISWDDGEHFYKA 466

Query: 50  RSPWW 36
            SPWW
Sbjct: 467 GSPWW 471