BLASTX nr result
ID: Bupleurum21_contig00004247
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00004247
(825 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002510221.1| chlorophyll A/B binding protein, putative [R... 191 2e-46
gb|ABN10530.1| Lhca5 protein [Gentiana lutea] 190 3e-46
ref|XP_002327136.1| light-harvesting complex I protein Lhca5 [Po... 187 2e-45
ref|XP_002284724.1| PREDICTED: chlorophyll a-b binding protein 4... 182 8e-44
ref|XP_002891322.1| light-harvesting complex protein [Arabidopsi... 176 7e-42
>ref|XP_002510221.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223550922|gb|EEF52408.1| chlorophyll A/B binding
protein, putative [Ricinus communis]
Length = 269
Score = 191 bits (485), Expect = 2e-46
Identities = 89/101 (88%), Positives = 94/101 (93%)
Frame = -1
Query: 819 IRAQERPTWLPGLDSPPYLDGTLPGDYGFDPLGLGEDPESLKWYVQAELVHARFAMAGVA 640
+RAQ+RPTWLPGLDSPPYLDGTL GDYGFDPLGLGEDPESLKWYVQAELVHARFAM G+A
Sbjct: 55 VRAQQRPTWLPGLDSPPYLDGTLAGDYGFDPLGLGEDPESLKWYVQAELVHARFAMLGIA 114
Query: 639 GILFTDLLRVTGTSNLPVWYEAGATKFSFASTRTLLIVQLL 517
GILFTDLLRVTG LPVWYEAGA K+ FASTRTLL+VQLL
Sbjct: 115 GILFTDLLRVTGIRKLPVWYEAGAVKYEFASTRTLLVVQLL 155
Score = 113 bits (282), Expect = 6e-23
Identities = 52/69 (75%), Positives = 60/69 (86%)
Frame = -2
Query: 377 NPLGLAKTAKDAEEWKLKEIKNGRLAMIAMLGFIVQASVTHVGPINNLMEHLSNPWHKTI 198
NP GLAK + A +WKLKEIKNGRLAM+AMLG VQA+VTH GPI+NL+EHLS+PWHKTI
Sbjct: 201 NPFGLAKDIRSARDWKLKEIKNGRLAMVAMLGIFVQAAVTHTGPIDNLLEHLSDPWHKTI 260
Query: 197 IQTLSDSSS 171
IQTLS S+S
Sbjct: 261 IQTLSHSTS 269
>gb|ABN10530.1| Lhca5 protein [Gentiana lutea]
Length = 272
Score = 190 bits (483), Expect = 3e-46
Identities = 89/103 (86%), Positives = 95/103 (92%)
Frame = -1
Query: 825 TSIRAQERPTWLPGLDSPPYLDGTLPGDYGFDPLGLGEDPESLKWYVQAELVHARFAMAG 646
T +RAQ+RPTWLPGLD PPYLDGTL GD+GFDPLGLGEDPESLKWYVQAELVH+RFAMAG
Sbjct: 57 TVVRAQQRPTWLPGLDPPPYLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAG 116
Query: 645 VAGILFTDLLRVTGTSNLPVWYEAGATKFSFASTRTLLIVQLL 517
VAGILFTDLLR TG SNLPVWYEAGATKF FA+T TL IVQ+L
Sbjct: 117 VAGILFTDLLRTTGLSNLPVWYEAGATKFQFANTTTLFIVQML 159
Score = 110 bits (276), Expect = 3e-22
Identities = 52/69 (75%), Positives = 60/69 (86%)
Frame = -2
Query: 377 NPLGLAKTAKDAEEWKLKEIKNGRLAMIAMLGFIVQASVTHVGPINNLMEHLSNPWHKTI 198
NPLG+AK K+A EWKLKEIKNGRLAM+A+LG VQASVTHVGP+ NL+EHLS+PWH TI
Sbjct: 204 NPLGIAKDIKNAPEWKLKEIKNGRLAMVAILGIFVQASVTHVGPLENLVEHLSDPWHTTI 263
Query: 197 IQTLSDSSS 171
IQ LS S+S
Sbjct: 264 IQILSASNS 272
>ref|XP_002327136.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
gi|222835451|gb|EEE73886.1| light-harvesting complex I
protein Lhca5 [Populus trichocarpa]
Length = 266
Score = 187 bits (475), Expect = 2e-45
Identities = 87/101 (86%), Positives = 93/101 (92%)
Frame = -1
Query: 819 IRAQERPTWLPGLDSPPYLDGTLPGDYGFDPLGLGEDPESLKWYVQAELVHARFAMAGVA 640
+ AQ+RPTWLPGLD PPYLDGTL GD+GFDPLGLGEDP+SLKWYVQAELVHARFAMAGVA
Sbjct: 52 VHAQQRPTWLPGLDPPPYLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHARFAMAGVA 111
Query: 639 GILFTDLLRVTGTSNLPVWYEAGATKFSFASTRTLLIVQLL 517
GILFTDLLRVTG LPVWYEAGA KF FASTRTL++VQLL
Sbjct: 112 GILFTDLLRVTGIRKLPVWYEAGAVKFEFASTRTLIVVQLL 152
Score = 110 bits (275), Expect = 4e-22
Identities = 50/69 (72%), Positives = 61/69 (88%)
Frame = -2
Query: 377 NPLGLAKTAKDAEEWKLKEIKNGRLAMIAMLGFIVQASVTHVGPINNLMEHLSNPWHKTI 198
NPLGLA+ ++A WKLKEIKNGRLAM+AM+G VQA+VTH GPI+NL+EHLSNPWH+TI
Sbjct: 198 NPLGLARDIENAHVWKLKEIKNGRLAMVAMVGIFVQAAVTHAGPIDNLIEHLSNPWHRTI 257
Query: 197 IQTLSDSSS 171
IQTL++S S
Sbjct: 258 IQTLANSGS 266
>ref|XP_002284724.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera] gi|302142320|emb|CBI19523.3| unnamed protein
product [Vitis vinifera]
Length = 264
Score = 182 bits (462), Expect = 8e-44
Identities = 85/103 (82%), Positives = 93/103 (90%)
Frame = -1
Query: 825 TSIRAQERPTWLPGLDSPPYLDGTLPGDYGFDPLGLGEDPESLKWYVQAELVHARFAMAG 646
T ++AQ+RPTWLPGLD PPYL+GTL GD+GFDPLGLGEDPE+L+WYVQAELVHARFAMAG
Sbjct: 49 TVVQAQQRPTWLPGLDPPPYLNGTLAGDFGFDPLGLGEDPENLRWYVQAELVHARFAMAG 108
Query: 645 VAGILFTDLLRVTGTSNLPVWYEAGATKFSFASTRTLLIVQLL 517
VAGIL TDLLRVTG SNLPVWYEAGA KF FAST L IVQL+
Sbjct: 109 VAGILVTDLLRVTGISNLPVWYEAGAVKFEFASTEALFIVQLI 151
Score = 115 bits (287), Expect = 2e-23
Identities = 53/68 (77%), Positives = 60/68 (88%)
Frame = -2
Query: 377 NPLGLAKTAKDAEEWKLKEIKNGRLAMIAMLGFIVQASVTHVGPINNLMEHLSNPWHKTI 198
NPLGLA+ K+A +WKLKEIKNGRLAM+AMLG VQASVTH GPI NL+EHLSNPWHKTI
Sbjct: 197 NPLGLARDIKNAHDWKLKEIKNGRLAMVAMLGVFVQASVTHAGPIENLVEHLSNPWHKTI 256
Query: 197 IQTLSDSS 174
IQT+S +S
Sbjct: 257 IQTISSTS 264
>ref|XP_002891322.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
gi|297337164|gb|EFH67581.1| light-harvesting complex
protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 176 bits (445), Expect = 7e-42
Identities = 82/99 (82%), Positives = 87/99 (87%)
Frame = -1
Query: 813 AQERPTWLPGLDSPPYLDGTLPGDYGFDPLGLGEDPESLKWYVQAELVHARFAMAGVAGI 634
A ER TWLPGLD PPYLDG L GDYGFDPLGLGEDPESL+WYVQAELVH+RFAM GVAGI
Sbjct: 43 AVERATWLPGLDPPPYLDGKLAGDYGFDPLGLGEDPESLRWYVQAELVHSRFAMLGVAGI 102
Query: 633 LFTDLLRVTGTSNLPVWYEAGATKFSFASTRTLLIVQLL 517
LFTDLLR TG NLPVWYEAGA KF FAST+TL++VQ L
Sbjct: 103 LFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFL 141
Score = 118 bits (295), Expect = 2e-24
Identities = 56/69 (81%), Positives = 62/69 (89%)
Frame = -2
Query: 377 NPLGLAKTAKDAEEWKLKEIKNGRLAMIAMLGFIVQASVTHVGPINNLMEHLSNPWHKTI 198
NPLGLAK K+A +WKLKEIKNGRLAM+AMLGF VQASVTH GPI+NL+EHLSNPWHKTI
Sbjct: 188 NPLGLAKDIKNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTI 247
Query: 197 IQTLSDSSS 171
IQTL S+S
Sbjct: 248 IQTLFTSTS 256