BLASTX nr result

ID: Bupleurum21_contig00004191 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00004191
         (710 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P23326.1|RK35_SPIOL RecName: Full=50S ribosomal protein L35, ...    58   2e-06
ref|XP_003610263.1| 50S ribosomal protein L35 [Medicago truncatu...    56   8e-06

>sp|P23326.1|RK35_SPIOL RecName: Full=50S ribosomal protein L35, chloroplastic; AltName:
           Full=CL35; Flags: Precursor gi|189096153|pdb|3BBO|5
           Chain 5, Homology Model For The Spinach Chloroplast 50s
           Subunit Fitted To 9.4a Cryo-Em Map Of The 70s
           Chlororibosome gi|170139|gb|AAA34043.1| ribosomal
           protein L35 [Spinacia oleracea]
          Length = 159

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 30/48 (62%), Positives = 32/48 (66%)
 Frame = -2

Query: 328 IVRRRAGKQHXXXXXXXXXXXXXXXXLQVDRSDYNNVIGALPYLKVNR 185
           IVRRRAGKQH                +QVDRSDY+NVIGALPYLKVNR
Sbjct: 110 IVRRRAGKQHLLAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNR 157


>ref|XP_003610263.1| 50S ribosomal protein L35 [Medicago truncatula]
           gi|217071304|gb|ACJ84012.1| unknown [Medicago
           truncatula] gi|355511318|gb|AES92460.1| 50S ribosomal
           protein L35 [Medicago truncatula]
           gi|388495356|gb|AFK35744.1| unknown [Medicago
           truncatula]
          Length = 148

 Score = 55.8 bits (133), Expect = 8e-06
 Identities = 29/48 (60%), Positives = 32/48 (66%)
 Frame = -2

Query: 328 IVRRRAGKQHXXXXXXXXXXXXXXXXLQVDRSDYNNVIGALPYLKVNR 185
           IVRRRAGKQH                +QV+RSDY+NVIGALPYLKVNR
Sbjct: 98  IVRRRAGKQHLLYKKNKKRKLRLSKMIQVNRSDYDNVIGALPYLKVNR 145


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