BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00004013
         (1027 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta...   370   e-100
ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein...   367   2e-99
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...   362   6e-98
ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein...   353   3e-95
ref|XP_002305685.1| PAF1 complex component [Populus trichocarpa]...   345   8e-93

>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
            gi|223541691|gb|EEF43239.1| RNA polymerase-associated
            protein RTF1, putative [Ricinus communis]
          Length = 660

 Score =  370 bits (949), Expect = e-100
 Identities = 191/342 (55%), Positives = 243/342 (71%), Gaps = 2/342 (0%)
 Frame = +3

Query: 3    MILSERSTKITDKKMQEKLR--KQKEKMNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 176
            MILSER+ K  DK + E++R  ++ E+  +                              
Sbjct: 128  MILSERADKKGDKNLTERIRSKRESERTTRSRKETPPLPSSRGVRTSARSADRAAAKDDA 187

Query: 177  LNELRAKRMRQQDSDAHRKSRDLSRGGSGNRRYSPVKRRPFTAAAVXXXXXXXXXXXXXX 356
            LNEL+A+R++QQD +AHRK RD SR GSG+R +SP+KR+ FT+A++              
Sbjct: 188  LNELKARRLKQQDPEAHRKLRDASRRGSGSRGFSPIKRKRFTSASLSSSSSESESRSHSE 247

Query: 357  XXXXXXXXXXXXXXXKNSLDSTILTFEDVKEITIKRSKLAKWLMEPFFDDLIVGCFVRVG 536
                                S   TF+D++EITI+RSKLAKW MEP+F++LIVGCFVRVG
Sbjct: 248  DEGSTGDGGMADSDDDGEPGSQGPTFDDIREITIRRSKLAKWFMEPWFEELIVGCFVRVG 307

Query: 537  IGKSRTGPIYRLCVVRNVDTADPDRQYKLDNKVTHKYLNVVWGNESSAARWQMAMVSDSN 716
            IG+S++GPIYRLC+VRNVD ADPDR YKL+NK T+KYLNV+WGNESSAARWQMAM+SDS 
Sbjct: 308  IGRSKSGPIYRLCLVRNVDAADPDRPYKLENKTTYKYLNVIWGNESSAARWQMAMISDSA 367

Query: 717  PNEVEFEQWVKEVERHNGRMPSKQDVLDKKDAILKSSTYVYSAATVKQMLQEKKSATWKP 896
            P E E++QWV+EVER  GRMP+KQD+L+KK+AI KS+T+VYSAATVKQMLQEKKSA+ +P
Sbjct: 368  PTEDEYKQWVREVERSGGRMPTKQDILEKKEAIRKSNTFVYSAATVKQMLQEKKSASSRP 427

Query: 897  LNIAAEKDRLRRGMEVAISKSDEAEVMRIKARLLELEASQQT 1022
            LN+AAEKDRLRR +EVA SK D+AEV RI+AR+ ELEAS+QT
Sbjct: 428  LNVAAEKDRLRRELEVAQSKQDDAEVERIRARIQELEASRQT 469


>ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis
            sativus] gi|449517636|ref|XP_004165851.1| PREDICTED: RNA
            polymerase-associated protein RTF1 homolog [Cucumis
            sativus]
          Length = 660

 Score =  367 bits (943), Expect = 2e-99
 Identities = 195/342 (57%), Positives = 242/342 (70%), Gaps = 3/342 (0%)
 Frame = +3

Query: 3    MILSERSTKITDKKMQEKLRKQKEK-MNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL 179
            MILS+R++K  DK + E LR + +K  +                               L
Sbjct: 128  MILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSSARSADRAAAKDDAL 187

Query: 180  NELRAKRMRQQDSDAHRKSRDLSRGGSGNRRYSPVKRRPFTAAAVXXXXXXXXXXXXXXX 359
            NELRAKR++QQD +AHRK RD SRG + +RR+SP KR+PFTA ++               
Sbjct: 188  NELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSLSSSSQSESESRFQSD 247

Query: 360  XXXXXXXXXXXXXX--KNSLDSTILTFEDVKEITIKRSKLAKWLMEPFFDDLIVGCFVRV 533
                            ++   S   TFED+KE+TI+RSKLAKWLMEPFF++LIVGCFVRV
Sbjct: 248  DEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEPFFEELIVGCFVRV 307

Query: 534  GIGKSRTGPIYRLCVVRNVDTADPDRQYKLDNKVTHKYLNVVWGNESSAARWQMAMVSDS 713
            GIG+SR+GPIYRLC+VRNVD  +PDRQYKL+NK+THKYLNV+WGNE+SAARWQMAMVSDS
Sbjct: 308  GIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNEASAARWQMAMVSDS 367

Query: 714  NPNEVEFEQWVKEVERHNGRMPSKQDVLDKKDAILKSSTYVYSAATVKQMLQEKKSATWK 893
             P E E++QWVKEVER  GRM SKQD+L+KK+AI K + +VYSAATVKQMLQ+KKSA+ +
Sbjct: 368  APLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAATVKQMLQDKKSASAR 427

Query: 894  PLNIAAEKDRLRRGMEVAISKSDEAEVMRIKARLLELEASQQ 1019
            PLNIAAEKDRLRR M+VA+SK+DEAEV RIK RL +LEAS++
Sbjct: 428  PLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQLEASRR 469


>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
            max]
          Length = 656

 Score =  362 bits (930), Expect = 6e-98
 Identities = 195/341 (57%), Positives = 238/341 (69%), Gaps = 2/341 (0%)
 Frame = +3

Query: 3    MILSERSTKITDKKMQEKLRKQKEKMNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLN 182
            MILS+R+TK  DK +  K+  ++EK                                 LN
Sbjct: 127  MILSDRATKKDDKNLLGKIASKREKGKVAVPRKQSPPMSSSRMRASARSADRSAKNDALN 186

Query: 183  ELRAKRMRQQDSDAHRKSRDLSRGGSGNRRYSPVKRRPFTAAAVXXXXXXXXXXXXXXXX 362
            ELRAKR++QQD +AHR+ R+ SR  +G+R +SP KR+PFT+ ++                
Sbjct: 187  ELRAKRLKQQDPEAHRRLREASRN-AGSRHFSPPKRKPFTSTSLSSSSHSESESRSHSDD 245

Query: 363  XXXXXXXXXXXXXKNSL--DSTILTFEDVKEITIKRSKLAKWLMEPFFDDLIVGCFVRVG 536
                          +     S   +F+DVKEITI+RSKLAKW MEPFF++LIVGCFVRVG
Sbjct: 246  EGSTGDGGIVDSDDDRALAGSEGPSFQDVKEITIRRSKLAKWFMEPFFEELIVGCFVRVG 305

Query: 537  IGKSRTGPIYRLCVVRNVDTADPDRQYKLDNKVTHKYLNVVWGNESSAARWQMAMVSDSN 716
            IG+S+TGPIYRLC+V+NVD ++PDRQYKL+NK T+KYLNVVWGNESSAARWQMAMVSDS 
Sbjct: 306  IGRSKTGPIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSA 365

Query: 717  PNEVEFEQWVKEVERHNGRMPSKQDVLDKKDAILKSSTYVYSAATVKQMLQEKKSATWKP 896
            P E EF+QWVKEV+R  GRMPSKQDVL+KK AI K+ T+VYSAATVKQMLQEKKSA+ +P
Sbjct: 366  PLEEEFKQWVKEVDRSGGRMPSKQDVLEKKQAIQKAITFVYSAATVKQMLQEKKSASTRP 425

Query: 897  LNIAAEKDRLRRGMEVAISKSDEAEVMRIKARLLELEASQQ 1019
            LN+AAEKDRLRR +E+A SK DEAEV RIK RLLELEAS+Q
Sbjct: 426  LNVAAEKDRLRRELEIAQSKYDEAEVERIKTRLLELEASRQ 466


>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
            max]
          Length = 656

 Score =  353 bits (907), Expect = 3e-95
 Identities = 191/341 (56%), Positives = 234/341 (68%), Gaps = 2/341 (0%)
 Frame = +3

Query: 3    MILSERSTKITDKKMQEKLRKQKEKMNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLN 182
            MILS+R+TK  DK +  K+  ++EK                                 LN
Sbjct: 127  MILSDRATKKDDKNLLGKIASKREKGKAAAPRKQSPPMSSSRMRASARSADRSAKNDALN 186

Query: 183  ELRAKRMRQQDSDAHRKSRDLSRGGSGNRRYSPVKRRPFTAAAVXXXXXXXXXXXXXXXX 362
            ELRAKR++QQD +AHR+ R+ SR  +G R +SP KR+ FT+ ++                
Sbjct: 187  ELRAKRLKQQDPEAHRRLREASRN-AGPRHFSPPKRKTFTSTSLSSSSHSESESRSHSDD 245

Query: 363  XXXXXXXXXXXXXKNSL--DSTILTFEDVKEITIKRSKLAKWLMEPFFDDLIVGCFVRVG 536
                          +     S   +F+D+KEITI+RSKLAKW MEPFF++LIVGCFVRVG
Sbjct: 246  EGSTGDGGIADSDDDRALAGSEGPSFQDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVG 305

Query: 537  IGKSRTGPIYRLCVVRNVDTADPDRQYKLDNKVTHKYLNVVWGNESSAARWQMAMVSDSN 716
            IG+S+TGPIYRLC+V+NVD ++PDRQYKL+NK T+KYLNVVWGNESSAARWQMAMVSDS 
Sbjct: 306  IGRSKTGPIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSA 365

Query: 717  PNEVEFEQWVKEVERHNGRMPSKQDVLDKKDAILKSSTYVYSAATVKQMLQEKKSATWKP 896
            P E EF+QWVKEV+   GRMPSKQDVL+KK AI K+ T+VYSAATVKQMLQEKKSA+ +P
Sbjct: 366  PMEEEFKQWVKEVDCSGGRMPSKQDVLEKKQAIQKAITFVYSAATVKQMLQEKKSASTRP 425

Query: 897  LNIAAEKDRLRRGMEVAISKSDEAEVMRIKARLLELEASQQ 1019
            LN+AAEKDRLRR +E+A SK DEAEV RIK RL ELEAS+Q
Sbjct: 426  LNVAAEKDRLRRELEIAQSKHDEAEVERIKTRLQELEASRQ 466


>ref|XP_002305685.1| PAF1 complex component [Populus trichocarpa]
            gi|222848649|gb|EEE86196.1| PAF1 complex component
            [Populus trichocarpa]
          Length = 662

 Score =  345 bits (886), Expect = 8e-93
 Identities = 180/340 (52%), Positives = 235/340 (69%), Gaps = 2/340 (0%)
 Frame = +3

Query: 3    MILSERSTKITDKKMQEKLR--KQKEKMNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 176
            +IL++R+ K  DK + EK+R  +  +K  +                              
Sbjct: 129  LILADRADKKGDKHLTEKIRLKRDNDKPTRSRKETPPLPSSRGVRSSARSADRAAAKDDA 188

Query: 177  LNELRAKRMRQQDSDAHRKSRDLSRGGSGNRRYSPVKRRPFTAAAVXXXXXXXXXXXXXX 356
            LNELRAKR++QQD +AHRK RD+SRG +G+R +S VK+  FT+A++              
Sbjct: 189  LNELRAKRLKQQDPEAHRKLRDVSRGSAGSRGFSQVKKNNFTSASLSSSSSESGSRSHSE 248

Query: 357  XXXXXXXXXXXXXXXKNSLDSTILTFEDVKEITIKRSKLAKWLMEPFFDDLIVGCFVRVG 536
                                S   T+ED+KEITI+R+KLAKW MEP+F++LI+GCFVRVG
Sbjct: 249  DEGSTGDGGMADSDEDVEPGSKGPTYEDIKEITIRRTKLAKWFMEPWFEELIIGCFVRVG 308

Query: 537  IGKSRTGPIYRLCVVRNVDTADPDRQYKLDNKVTHKYLNVVWGNESSAARWQMAMVSDSN 716
            IG+S++GP+YRLC+VRNVD A+PD+ YKL+NK T+KYLNV WG ++SAARWQMAMVSDS 
Sbjct: 309  IGRSKSGPVYRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGADTSAARWQMAMVSDSG 368

Query: 717  PNEVEFEQWVKEVERHNGRMPSKQDVLDKKDAILKSSTYVYSAATVKQMLQEKKSATWKP 896
            P E E++QWV+EVE   GR+PSKQD+L+KK+AI KS+T+VYSAATVKQMLQEKKSA+ +P
Sbjct: 369  PTEEEYKQWVREVECGGGRLPSKQDILEKKEAIRKSNTFVYSAATVKQMLQEKKSASSRP 428

Query: 897  LNIAAEKDRLRRGMEVAISKSDEAEVMRIKARLLELEASQ 1016
            LN+AAEKDRLRR +E+A SK DEAEV RI AR+ ELEAS+
Sbjct: 429  LNVAAEKDRLRRELEIAQSKHDEAEVERINARIEELEASR 468