BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00003477
         (414 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003554590.1| PREDICTED: DEAD-box ATP-dependent RNA helica...    95   5e-18
ref|XP_002278318.1| PREDICTED: DEAD-box ATP-dependent RNA helica...    95   7e-18
emb|CAN77581.1| hypothetical protein VITISV_015347 [Vitis vinifera]    95   7e-18
ref|XP_002512602.1| dead box ATP-dependent RNA helicase, putativ...    92   3e-17
ref|XP_003521635.1| PREDICTED: DEAD-box ATP-dependent RNA helica...    90   2e-16

>ref|XP_003554590.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
           chloroplastic-like [Glycine max]
          Length = 771

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 64/139 (46%), Positives = 81/139 (58%), Gaps = 2/139 (1%)
 Frame = -3

Query: 412 RPTSISPLSLTFSS-DKSSHFSALKSSFTRFKPFGGCGCSSFVASAIATPNSSVLSEEAF 236
           RP++ S  S+   S D  SHF+ L  +       G     SFV SA+ATPNSS+LSEEAF
Sbjct: 22  RPSTASTSSVRLQSLDSKSHFNNLLRAHRHSTGPGLKPTPSFVPSAVATPNSSLLSEEAF 81

Query: 235 RGLGR-FGKDDLNXXXXXXXXXXXXXXXXXXXXXXXXELQITKLGLPEKLVQSLATRGIT 59
           +GL R F ++D                          EL I+KL LP +LV+SL +RGIT
Sbjct: 82  KGLAREFDQND----------DQFTRASSAAESVNPDELDISKLDLPSRLVESLRSRGIT 131

Query: 58  ELFPIQRAVLVPALEGKDL 2
           +LFPIQRAVLVPALEG+D+
Sbjct: 132 QLFPIQRAVLVPALEGRDI 150


>ref|XP_002278318.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic
           [Vitis vinifera] gi|296089875|emb|CBI39694.3| unnamed
           protein product [Vitis vinifera]
          Length = 764

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 68/142 (47%), Positives = 77/142 (54%), Gaps = 5/142 (3%)
 Frame = -3

Query: 412 RPTSISPLSLTFSSDKSSHFSALKSSFTRFKPFGGCGCS-----SFVASAIATPNSSVLS 248
           R TS   LSL FS    +H    K+  TR         S     SFV SAIATPNS VLS
Sbjct: 21  RRTSAHSLSLPFSD--KTHLGVFKAPNTRVLSDASLRRSFKQGISFVPSAIATPNS-VLS 77

Query: 247 EEAFRGLGRFGKDDLNXXXXXXXXXXXXXXXXXXXXXXXXELQITKLGLPEKLVQSLATR 68
           EEAF+GLG F KD L+                         L + +LGLP +LV+SL  R
Sbjct: 78  EEAFKGLGGFSKDPLDVTDTDDDYDPEIEASAAAQEDE---LALAQLGLPPRLVESLEQR 134

Query: 67  GITELFPIQRAVLVPALEGKDL 2
           GIT LFPIQRAVLVPALEG+DL
Sbjct: 135 GITHLFPIQRAVLVPALEGRDL 156


>emb|CAN77581.1| hypothetical protein VITISV_015347 [Vitis vinifera]
          Length = 786

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 68/142 (47%), Positives = 77/142 (54%), Gaps = 5/142 (3%)
 Frame = -3

Query: 412 RPTSISPLSLTFSSDKSSHFSALKSSFTRFKPFGGCGCS-----SFVASAIATPNSSVLS 248
           R TS   LSL FS    +H    K+  TR         S     SFV SAIATPNS VLS
Sbjct: 21  RRTSAHSLSLPFSD--KTHLGVFKAPNTRVLSDASLRRSFKQGISFVPSAIATPNS-VLS 77

Query: 247 EEAFRGLGRFGKDDLNXXXXXXXXXXXXXXXXXXXXXXXXELQITKLGLPEKLVQSLATR 68
           EEAF+GLG F KD L+                         L + +LGLP +LV+SL  R
Sbjct: 78  EEAFKGLGGFSKDPLDVTDTDDDYDPEIEASAAAQEDE---LALAQLGLPPRLVESLEQR 134

Query: 67  GITELFPIQRAVLVPALEGKDL 2
           GIT LFPIQRAVLVPALEG+DL
Sbjct: 135 GITHLFPIQRAVLVPALEGRDL 156


>ref|XP_002512602.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
           gi|223548563|gb|EEF50054.1| dead box ATP-dependent RNA
           helicase, putative [Ricinus communis]
          Length = 772

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 68/141 (48%), Positives = 83/141 (58%), Gaps = 4/141 (2%)
 Frame = -3

Query: 412 RPTSISPLSLTFSSDKSSHFSAL---KSSFTRFKPFGGCGCSSFVASAIATPNSSVLSEE 242
           R T+ + LS+  ++DK  HF++L     S    K   G G SSFV SAIA PNS +LSEE
Sbjct: 23  RKTNSTTLSIP-TTDKP-HFNSLVLQSCSLYNNKHGHGHGHSSFVTSAIAAPNS-ILSEE 79

Query: 241 AFRGLG-RFGKDDLNXXXXXXXXXXXXXXXXXXXXXXXXELQITKLGLPEKLVQSLATRG 65
           AF+GLG R    D +                        EL I+KLGLP++LV+SL  RG
Sbjct: 80  AFKGLGGRLSDFDEDEDNDDVSSGGYEDDGAGESLPDDDELAISKLGLPQRLVESLEKRG 139

Query: 64  ITELFPIQRAVLVPALEGKDL 2
           IT LFPIQRAVLVPALEG+DL
Sbjct: 140 ITHLFPIQRAVLVPALEGRDL 160


>ref|XP_003521635.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
           chloroplastic-like [Glycine max]
          Length = 771

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 59/126 (46%), Positives = 75/126 (59%), Gaps = 3/126 (2%)
 Frame = -3

Query: 370 DKSSHFSALKSSFTRFKPFGGCGCS--SFVASAIATPNSSVLSEEAFRGLGR-FGKDDLN 200
           D  SHF+ +  +  R     G   +  +FV SA+ATPNSS+LSEEAF+GLGR F + D  
Sbjct: 37  DSKSHFNNVLRAHQRHSTGPGLKPTPTTFVPSAVATPNSSLLSEEAFKGLGRDFDEFD-- 94

Query: 199 XXXXXXXXXXXXXXXXXXXXXXXXELQITKLGLPEKLVQSLATRGITELFPIQRAVLVPA 20
                                   EL I+KL LP +LV+SL +RGIT+LFPIQRAVLVPA
Sbjct: 95  ---------HASDSDSAAESVHPDELDISKLDLPSRLVESLQSRGITQLFPIQRAVLVPA 145

Query: 19  LEGKDL 2
           LEG+D+
Sbjct: 146 LEGRDI 151