BLASTX nr result
ID: Bupleurum21_contig00003434
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00003434
(2177 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002269984.1| PREDICTED: pentatricopeptide repeat-containi... 827 0.0
ref|XP_002513427.1| pentatricopeptide repeat-containing protein,... 818 0.0
gb|ADN33755.1| pentatricopeptide repeat-containing protein [Cucu... 793 0.0
ref|XP_004162287.1| PREDICTED: pentatricopeptide repeat-containi... 790 0.0
ref|XP_004144640.1| PREDICTED: pentatricopeptide repeat-containi... 790 0.0
>ref|XP_002269984.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
chloroplastic [Vitis vinifera]
gi|147852271|emb|CAN82234.1| hypothetical protein
VITISV_038804 [Vitis vinifera]
Length = 567
Score = 827 bits (2137), Expect = 0.0
Identities = 397/564 (70%), Positives = 475/564 (84%)
Frame = -2
Query: 1726 MAVLVNSVSPIASPCVEHKRKCSGFSLQIPHIQSFSFGKGFSRVLAYTHMAVSSKDTVFT 1547
MA+LVN++SPI SP E+ RK GF Q+P++ + S KGFSRVLA T + +S KD VFT
Sbjct: 1 MAILVNAMSPITSPSPENARKVCGFFSQVPNLHTLSLNKGFSRVLASTQITISPKDNVFT 60
Query: 1546 IPNWRYGKNDARTKDYKLNDAFLYMEYMVGKGHTPDVGHATQLLYDLCKLNKLRKATRVM 1367
+PNWR GKND RT+D +LNDAFLY+EYM+GKGH PD G ATQL+Y+LCK NK+RKAT+VM
Sbjct: 61 LPNWRSGKNDPRTRDLRLNDAFLYLEYMIGKGHKPDGGQATQLMYELCKSNKMRKATKVM 120
Query: 1366 EMMVTSGTIPDAASYAYLVNQLCKRGNVGHAMQLVEKMEEYGYPTNTMTYNSLVRGLCMR 1187
E+M+ SGT PD AS +LVN LCKRGNVG+AMQLVEKMEEYGYPTNT+TYNSLVRGLCM
Sbjct: 121 ELMIGSGTTPDPASCTFLVNNLCKRGNVGYAMQLVEKMEEYGYPTNTVTYNSLVRGLCMH 180
Query: 1186 GDLSQSLQYLDRLMNKGLVPNAFTYAILLEAAYKEKGVNEAISLLDDIIDKGGNPNLVSY 1007
G+LSQSLQ LD+ M KGLVPN FTY+ LLEAAYKE+G +EAI LLD+I+ KGG PNLVSY
Sbjct: 181 GNLSQSLQILDKFMKKGLVPNVFTYSFLLEAAYKERGADEAIRLLDEIVAKGGKPNLVSY 240
Query: 1006 NVLLTGLCKEGRTDEAITFFRNMPSQGFNPNVVSYNILLRSLCHAGRWEEANELLSEMVG 827
NVLLTGLCKEGRT+EA+ FFR++PS+GF+PNVVSYNILLRSLC+ GRWE+A ELL+EM G
Sbjct: 241 NVLLTGLCKEGRTEEAMQFFRDLPSKGFSPNVVSYNILLRSLCYEGRWEKAKELLAEMDG 300
Query: 826 EEREPSVVTYNILIASLAYHGRVDHALDVLDEMFMGPFTPTAASYNPIISQLCKEKKVDD 647
ER PS+VT+NILI SLA HG+ D AL+VLD+M F TAASYNPII++LCKE KVD
Sbjct: 301 GERSPSIVTFNILIGSLALHGQTDQALEVLDDMSRARFKATAASYNPIIARLCKEGKVDL 360
Query: 646 VNRCLDQMIYRHCHPNEGTYNAISVLCKEGMVQEAFAIFKGLSSKQKSSTYEFFKNVISA 467
V +CLDQM+YR C+PNEGTYNAI+VLC+EG VQEAF+I + L +KQ SST++F+K VIS+
Sbjct: 361 VVKCLDQMMYRRCNPNEGTYNAIAVLCEEGKVQEAFSIIQSLGNKQNSSTHDFYKGVISS 420
Query: 466 LCRKGNTYPALQLMYEMTKCGFTPGCYTYSSLIRGLCMEGMLNEAVQIFCIMEEGGYKPD 287
LCRKGNTYPA QL+YEMTK GF P YTYSSLIRGLC EGML+EA++IF IMEE +PD
Sbjct: 421 LCRKGNTYPAFQLLYEMTKYGFVPDSYTYSSLIRGLCSEGMLDEAMEIFSIMEENYCRPD 480
Query: 286 IDNFNALILGLCKSQRTDLAFEIFEMMIEKNYKPSETTYTILVEGIVHEGEKELAVTVLK 107
+DNFNALILGLCK ++TDL+ +FEMM++K Y P+ETTYTI+VEGI H+ E ELA VLK
Sbjct: 481 VDNFNALILGLCKCRKTDLSLMVFEMMVKKGYMPNETTYTIIVEGIAHQEEMELAAAVLK 540
Query: 106 ELHRRQVISQSTLERLIMQYDLEG 35
EL+ RQ + +STLERL+MQYDLEG
Sbjct: 541 ELYLRQAVGRSTLERLVMQYDLEG 564
>ref|XP_002513427.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223547335|gb|EEF48830.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 567
Score = 818 bits (2113), Expect = 0.0
Identities = 394/564 (69%), Positives = 472/564 (83%)
Frame = -2
Query: 1726 MAVLVNSVSPIASPCVEHKRKCSGFSLQIPHIQSFSFGKGFSRVLAYTHMAVSSKDTVFT 1547
MA LV+SVSP+ +P E R GF IP++ SFS K F+RVLA T + +S KD+V T
Sbjct: 1 MASLVHSVSPLTNPFTEAARIACGFFSHIPNLHSFSLNKDFTRVLASTQITISPKDSVIT 60
Query: 1546 IPNWRYGKNDARTKDYKLNDAFLYMEYMVGKGHTPDVGHATQLLYDLCKLNKLRKATRVM 1367
+PNWR GKND R +D +++DAF ++E++V GH PDV ATQLLYDLCK NK++KA RVM
Sbjct: 61 LPNWRSGKNDQRNRDMRISDAFFHLEHIVKNGHKPDVVQATQLLYDLCKSNKMKKAIRVM 120
Query: 1366 EMMVTSGTIPDAASYAYLVNQLCKRGNVGHAMQLVEKMEEYGYPTNTMTYNSLVRGLCMR 1187
EMM++ G IPDAASY +LVN LCKRGNVG+AMQLVEKME+ GYP NT+TYN+LV+GLCM
Sbjct: 121 EMMISCGIIPDAASYTFLVNHLCKRGNVGYAMQLVEKMEDSGYPANTVTYNTLVKGLCMH 180
Query: 1186 GDLSQSLQYLDRLMNKGLVPNAFTYAILLEAAYKEKGVNEAISLLDDIIDKGGNPNLVSY 1007
G+L++SLQ+LDRLM KGLVPNAFTY+ LLEAAYKE+GVNEA+ LLD+II KGG PNLVSY
Sbjct: 181 GNLNKSLQFLDRLMQKGLVPNAFTYSSLLEAAYKERGVNEAMRLLDEIIAKGGQPNLVSY 240
Query: 1006 NVLLTGLCKEGRTDEAITFFRNMPSQGFNPNVVSYNILLRSLCHAGRWEEANELLSEMVG 827
NVLLTGLCKEGR +EAI F+N+PS+GF+PNVVSYNILLRSLC+ GRWEEANELL+EM G
Sbjct: 241 NVLLTGLCKEGRIEEAIRLFKNLPSKGFSPNVVSYNILLRSLCYEGRWEEANELLAEMNG 300
Query: 826 EEREPSVVTYNILIASLAYHGRVDHALDVLDEMFMGPFTPTAASYNPIISQLCKEKKVDD 647
ER PS+VTYNILI SLA+HG+++ AL V+DEM MGPF PTA SYNPII++LCKE KV+
Sbjct: 301 RERSPSIVTYNILIGSLAFHGKIEQALQVIDEMMMGPFKPTATSYNPIIARLCKEGKVEA 360
Query: 646 VNRCLDQMIYRHCHPNEGTYNAISVLCKEGMVQEAFAIFKGLSSKQKSSTYEFFKNVISA 467
V CLDQMI+ C PNEGT+NAI+VLC EG VQEAF++ + L +KQ SS ++++K V+S
Sbjct: 361 VVNCLDQMIFGRCSPNEGTFNAIAVLCYEGKVQEAFSLIQSLGNKQNSSIHDYYKGVVSC 420
Query: 466 LCRKGNTYPALQLMYEMTKCGFTPGCYTYSSLIRGLCMEGMLNEAVQIFCIMEEGGYKPD 287
LC+KGNTYPA L+YEMTK GFTP YTYSSLIRGLC+EGML EA++IF ++EE Y+PD
Sbjct: 421 LCKKGNTYPAFLLLYEMTKYGFTPDSYTYSSLIRGLCIEGMLYEAMEIFKLLEEDHYRPD 480
Query: 286 IDNFNALILGLCKSQRTDLAFEIFEMMIEKNYKPSETTYTILVEGIVHEGEKELAVTVLK 107
IDNFNALILG CKS RTDL+ E+FEMMIEK Y PSETTYTILVEGI+HE EKELA VL+
Sbjct: 481 IDNFNALILGFCKSHRTDLSLEVFEMMIEKGYTPSETTYTILVEGIIHEEEKELAAEVLR 540
Query: 106 ELHRRQVISQSTLERLIMQYDLEG 35
ELH RQV+SQST+ERLIMQYDLEG
Sbjct: 541 ELHLRQVMSQSTVERLIMQYDLEG 564
>gb|ADN33755.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
melo]
Length = 566
Score = 793 bits (2047), Expect = 0.0
Identities = 384/562 (68%), Positives = 467/562 (83%)
Frame = -2
Query: 1726 MAVLVNSVSPIASPCVEHKRKCSGFSLQIPHIQSFSFGKGFSRVLAYTHMAVSSKDTVFT 1547
MA L+N+VSPI + E R+ GF IP++Q S KGFS+VLA T + +S KDT+FT
Sbjct: 1 MATLLNTVSPITNTSPETTRRGCGFFSHIPNLQKLSLNKGFSKVLASTQITISPKDTIFT 60
Query: 1546 IPNWRYGKNDARTKDYKLNDAFLYMEYMVGKGHTPDVGHATQLLYDLCKLNKLRKATRVM 1367
+PNW+ GK + ++K+ +L DAF ++E+MV KG PDV ATQLLYDLCK K+RKA +VM
Sbjct: 61 LPNWKTGKVEQKSKELRLTDAFFHLEFMVEKGQKPDVFQATQLLYDLCKACKMRKAIKVM 120
Query: 1366 EMMVTSGTIPDAASYAYLVNQLCKRGNVGHAMQLVEKMEEYGYPTNTMTYNSLVRGLCMR 1187
EMM+ SG IPDA+SY +LV+ LC++GNVG+AMQLV+KMEEYGYPTNT+TYNSLVRGLCM
Sbjct: 121 EMMIGSGIIPDASSYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTVTYNSLVRGLCMH 180
Query: 1186 GDLSQSLQYLDRLMNKGLVPNAFTYAILLEAAYKEKGVNEAISLLDDIIDKGGNPNLVSY 1007
G+L+QSLQ LDRL+ KGLVPNA+TY+ LLEAAYKE+G +EA LLD+II KGG PNLVSY
Sbjct: 181 GNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGEPNLVSY 240
Query: 1006 NVLLTGLCKEGRTDEAITFFRNMPSQGFNPNVVSYNILLRSLCHAGRWEEANELLSEMVG 827
NVLLTGLCKEGRT++AI FR +PS+GF+PNVVSYNILLRSLC+ GRWEEAN LL+EM G
Sbjct: 241 NVLLTGLCKEGRTEDAIRLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMNG 300
Query: 826 EEREPSVVTYNILIASLAYHGRVDHALDVLDEMFMGPFTPTAASYNPIISQLCKEKKVDD 647
+ER PS VTYNILI SLA HGR +HAL+VL+EM F PTA+SYNPII+ LCK+ K+D
Sbjct: 301 DERSPSTVTYNILIGSLALHGRTEHALEVLEEMIRARFKPTASSYNPIIAHLCKDGKLDL 360
Query: 646 VNRCLDQMIYRHCHPNEGTYNAISVLCKEGMVQEAFAIFKGLSSKQKSSTYEFFKNVISA 467
V +CLDQM+YRHC+PNEGTYNAI+ LC+EGMVQEAF+I + L +KQ SST EF+K VI++
Sbjct: 361 VVKCLDQMMYRHCNPNEGTYNAIATLCEEGMVQEAFSIIQSLGNKQHSSTQEFYKIVITS 420
Query: 466 LCRKGNTYPALQLMYEMTKCGFTPGCYTYSSLIRGLCMEGMLNEAVQIFCIMEEGGYKPD 287
LCRKGNTYPA QL+YEMTK GFTP +TYSSLIRGLCMEGMLNEA++IF +MEE KPD
Sbjct: 421 LCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVMEENN-KPD 479
Query: 286 IDNFNALILGLCKSQRTDLAFEIFEMMIEKNYKPSETTYTILVEGIVHEGEKELAVTVLK 107
+N+N+LILG CKS+RTDLA ++FE+M+ K Y P+ETTYTILVEGI+HE E +LA VL+
Sbjct: 480 TENYNSLILGCCKSRRTDLALDVFEIMVGKGYLPNETTYTILVEGIIHEKEMDLATKVLR 539
Query: 106 ELHRRQVISQSTLERLIMQYDL 41
EL R VISQSTLERL+MQYDL
Sbjct: 540 ELQLRDVISQSTLERLVMQYDL 561
>ref|XP_004162287.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
chloroplastic-like [Cucumis sativus]
Length = 566
Score = 790 bits (2040), Expect = 0.0
Identities = 384/562 (68%), Positives = 466/562 (82%)
Frame = -2
Query: 1726 MAVLVNSVSPIASPCVEHKRKCSGFSLQIPHIQSFSFGKGFSRVLAYTHMAVSSKDTVFT 1547
MA L+N+VSPI +P E R+ GF IP+IQ S KGFS+VLA T + +S KDT+FT
Sbjct: 1 MATLLNTVSPITNPSPETTRRGCGFFSHIPNIQKLSLNKGFSKVLASTQITISPKDTIFT 60
Query: 1546 IPNWRYGKNDARTKDYKLNDAFLYMEYMVGKGHTPDVGHATQLLYDLCKLNKLRKATRVM 1367
+PNW+ GK D ++K+ +LNDAF ++E+MV KG PDV ATQLLYDLCK K+RKA +VM
Sbjct: 61 LPNWKIGKLDQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCKTCKMRKAIKVM 120
Query: 1366 EMMVTSGTIPDAASYAYLVNQLCKRGNVGHAMQLVEKMEEYGYPTNTMTYNSLVRGLCMR 1187
EMM+ SG IPDAASY +LV+ LC++GNVG+AMQLV+KMEEYGYPTNT TYNSLVRGLCM
Sbjct: 121 EMMIGSGIIPDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMH 180
Query: 1186 GDLSQSLQYLDRLMNKGLVPNAFTYAILLEAAYKEKGVNEAISLLDDIIDKGGNPNLVSY 1007
G+L+QSLQ LDRL+ KGLVPNA+TY+ LLEAAYKE+G +EA LLD+II KGG PNLVSY
Sbjct: 181 GNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNLVSY 240
Query: 1006 NVLLTGLCKEGRTDEAITFFRNMPSQGFNPNVVSYNILLRSLCHAGRWEEANELLSEMVG 827
NVLLTGLCKEGRT++A+ FR +PS+GF+PNVVSYNILLRSLC+ GRWEEAN LL+EM G
Sbjct: 241 NVLLTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMDG 300
Query: 826 EEREPSVVTYNILIASLAYHGRVDHALDVLDEMFMGPFTPTAASYNPIISQLCKEKKVDD 647
+ER PS VTYNILI SL HGR +HAL+VL+EM F PTA+SYNPII++LCK++KVD
Sbjct: 301 DERSPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTASSYNPIIARLCKDRKVDL 360
Query: 646 VNRCLDQMIYRHCHPNEGTYNAISVLCKEGMVQEAFAIFKGLSSKQKSSTYEFFKNVISA 467
V +CLDQM+YRHC+PNEGTYNAI+ LC+EGMVQEAF+I + L +KQ ST EF+K VI++
Sbjct: 361 VVKCLDQMMYRHCNPNEGTYNAIATLCEEGMVQEAFSIIQSLGNKQHFSTQEFYKIVITS 420
Query: 466 LCRKGNTYPALQLMYEMTKCGFTPGCYTYSSLIRGLCMEGMLNEAVQIFCIMEEGGYKPD 287
LCRKGNTYPA QL+YEMTK GFTP +TYSSLIRGLCMEGMLNEA++IF +MEE K D
Sbjct: 421 LCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVMEE-NIKLD 479
Query: 286 IDNFNALILGLCKSQRTDLAFEIFEMMIEKNYKPSETTYTILVEGIVHEGEKELAVTVLK 107
+N+N+LILG CKS+RTDLA ++FE+M+ K Y +ETTYTILVEGI+HE E +LA VL+
Sbjct: 480 TENYNSLILGCCKSRRTDLALDVFEIMVGKGYLANETTYTILVEGIIHEKEMDLATEVLR 539
Query: 106 ELHRRQVISQSTLERLIMQYDL 41
EL R VI+QST+ERLIMQYDL
Sbjct: 540 ELQLRDVINQSTVERLIMQYDL 561
>ref|XP_004144640.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
chloroplastic-like [Cucumis sativus]
Length = 566
Score = 790 bits (2039), Expect = 0.0
Identities = 383/562 (68%), Positives = 466/562 (82%)
Frame = -2
Query: 1726 MAVLVNSVSPIASPCVEHKRKCSGFSLQIPHIQSFSFGKGFSRVLAYTHMAVSSKDTVFT 1547
MA L+N+VSPI +P E R+ GF IP+IQ S KGFS+VLA T + +S KDT+FT
Sbjct: 1 MATLLNTVSPITNPSPETTRRGCGFFSHIPNIQKLSLNKGFSKVLASTQITISPKDTIFT 60
Query: 1546 IPNWRYGKNDARTKDYKLNDAFLYMEYMVGKGHTPDVGHATQLLYDLCKLNKLRKATRVM 1367
+PNW+ GK D ++K+ +LNDAF ++E+MV KG PDV ATQLLYDLCK K+RKA +VM
Sbjct: 61 LPNWKIGKLDQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCKTCKMRKAIKVM 120
Query: 1366 EMMVTSGTIPDAASYAYLVNQLCKRGNVGHAMQLVEKMEEYGYPTNTMTYNSLVRGLCMR 1187
EMM+ SG IPDAASY +LV+ LC++GNVG+AMQLV+KMEEYGYPTNT TYNSLVRGLCM
Sbjct: 121 EMMIGSGIIPDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMH 180
Query: 1186 GDLSQSLQYLDRLMNKGLVPNAFTYAILLEAAYKEKGVNEAISLLDDIIDKGGNPNLVSY 1007
G+L+QSLQ LDRL+ KGLVPNA+TY+ LLEAAYKE+G +EA LLD+II KGG PNLVSY
Sbjct: 181 GNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNLVSY 240
Query: 1006 NVLLTGLCKEGRTDEAITFFRNMPSQGFNPNVVSYNILLRSLCHAGRWEEANELLSEMVG 827
NVLLTGLCKEGRT++A+ FR +PS+GF+PNVVSYNILLRSLC+ GRWEEAN LL+EM G
Sbjct: 241 NVLLTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMDG 300
Query: 826 EEREPSVVTYNILIASLAYHGRVDHALDVLDEMFMGPFTPTAASYNPIISQLCKEKKVDD 647
+ER PS VTYNILI SL HGR +HAL+VL+EM F PTA+SYNPII++LCK++KVD
Sbjct: 301 DERSPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTASSYNPIIARLCKDRKVDL 360
Query: 646 VNRCLDQMIYRHCHPNEGTYNAISVLCKEGMVQEAFAIFKGLSSKQKSSTYEFFKNVISA 467
V +CLDQM+YRHC+PNEGTYNAI+ LC+EGMVQEAF+I + L +KQ ST EF+K VI++
Sbjct: 361 VVKCLDQMMYRHCNPNEGTYNAIATLCEEGMVQEAFSIIQSLGNKQHFSTQEFYKIVITS 420
Query: 466 LCRKGNTYPALQLMYEMTKCGFTPGCYTYSSLIRGLCMEGMLNEAVQIFCIMEEGGYKPD 287
LCRKGNTYPA QL+YEMTK GFTP +TYSSLIRGLCMEGMLNEA++IF +MEE K D
Sbjct: 421 LCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVMEE-NIKLD 479
Query: 286 IDNFNALILGLCKSQRTDLAFEIFEMMIEKNYKPSETTYTILVEGIVHEGEKELAVTVLK 107
+N+N+LILG CKS+RTDLA ++FE+M+ K Y +ETTYTILVEGI+HE E +LA VL+
Sbjct: 480 TENYNSLILGCCKSRRTDLALDVFEIMVGKGYLANETTYTILVEGIIHEKEMDLATEVLR 539
Query: 106 ELHRRQVISQSTLERLIMQYDL 41
EL R VI+QST+ERL+MQYDL
Sbjct: 540 ELQLRDVINQSTVERLVMQYDL 561