BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00003148
         (617 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAD13175.1| viroid RNA-binding protein [Solanum lycopersicum]     197   1e-48
ref|NP_001234374.1| PSTVd RNA-binding protein Virp1d [Solanum ly...   197   1e-48
emb|CAD43285.1| bromodomain-containing RNA-binding protein 2 [Ni...   196   3e-48
emb|CAD43287.1| bromodomain-containing RNA-binding protein 2 [Ni...   195   6e-48
emb|CAD43286.1| bromodomain-containing RNA-binding protein 1 [Ni...   195   6e-48

>emb|CAD13175.1| viroid RNA-binding protein [Solanum lycopersicum]
          Length = 313

 Score =  197 bits (501), Expect = 1e-48
 Identities = 119/221 (53%), Positives = 137/221 (61%), Gaps = 16/221 (7%)
 Frame = -1

Query: 617 QGSSWNEIXXXXXXXXXXXXKTNLINSIPRKVEKIPEPVLKPNHSTGSNPS-------NS 459
           QGSSWN I                + +I +K E++       NHS+ S PS         
Sbjct: 25  QGSSWNHIPTPERVKKPKPTP---VPNISKKQERMQ------NHSSASTPSLPVPPPNPP 75

Query: 458 RSAQSPVRSPSPVKARPVKEQQVKPEKPVGHVKGASTTRLPKPRAKDPNKREMSMDEKQR 279
              QSP+ +PSPV+A   K Q       +G        + PKPRAKDPNKREM+M+EK +
Sbjct: 76  ARQQSPLSTPSPVRAPAAKPQSAAKVPTMG--------KQPKPRAKDPNKREMNMEEKHK 127

Query: 278 LGVGLQSLPQEKMPQLVQIIRKRNEQLAQEGDEIELDIEALDTETLWELDRFVTNWKKLV 99
           LGVGLQSLPQEKMPQLVQIIRKRNE LAQ+GDEIELDIEALDTETLWELDRFVTNWKK+V
Sbjct: 128 LGVGLQSLPQEKMPQLVQIIRKRNEHLAQDGDEIELDIEALDTETLWELDRFVTNWKKMV 187

Query: 98  SKTKRQVLMENY------SAVPAATTDTDEA---PVSNRND 3
           SKTKRQ LM N       +A  AATT   EA     S +ND
Sbjct: 188 SKTKRQALMNNLGPPSASAAASAATTSVAEADGPTTSEKND 228


>ref|NP_001234374.1| PSTVd RNA-binding protein Virp1d [Solanum lycopersicum]
           gi|10179602|gb|AAG13810.1|AF190891_1 PSTVd RNA-binding
           protein Virp1a [Solanum lycopersicum]
           gi|10179604|gb|AAG13811.1|AF190892_1 PSTVd RNA-binding
           protein Virp1b [Solanum lycopersicum]
           gi|10179606|gb|AAG13812.1|AF190893_1 PSTVd RNA-binding
           protein Virp1c [Solanum lycopersicum]
           gi|10179608|gb|AAG13813.1|AF190894_1 PSTVd RNA-binding
           protein Virp1d [Solanum lycopersicum]
           gi|13186132|emb|CAC33448.1| PSTVd RNA-biding protein,
           Virp1 [Solanum lycopersicum] gi|13186134|emb|CAC33449.1|
           PSTVd RNA-biding protein, Virp1 [Solanum lycopersicum]
           gi|13186136|emb|CAC33450.1| PSTVd RNA-biding protein,
           Virp1 [Solanum lycopersicum] gi|13186138|emb|CAC33451.1|
           PSTVd RNA-biding protein, Virp1 [Solanum lycopersicum]
          Length = 602

 Score =  197 bits (501), Expect = 1e-48
 Identities = 119/221 (53%), Positives = 137/221 (61%), Gaps = 16/221 (7%)
 Frame = -1

Query: 617 QGSSWNEIXXXXXXXXXXXXKTNLINSIPRKVEKIPEPVLKPNHSTGSNPS-------NS 459
           QGSSWN I                + +I +K E++       NHS+ S PS         
Sbjct: 314 QGSSWNHIPTPERVKKPKPTP---VPNISKKQERMQ------NHSSASTPSLPVPPPNPP 364

Query: 458 RSAQSPVRSPSPVKARPVKEQQVKPEKPVGHVKGASTTRLPKPRAKDPNKREMSMDEKQR 279
              QSP+ +PSPV+A   K Q       +G        + PKPRAKDPNKREM+M+EK +
Sbjct: 365 ARQQSPLSTPSPVRAPAAKPQSAAKVPTMG--------KQPKPRAKDPNKREMNMEEKHK 416

Query: 278 LGVGLQSLPQEKMPQLVQIIRKRNEQLAQEGDEIELDIEALDTETLWELDRFVTNWKKLV 99
           LGVGLQSLPQEKMPQLVQIIRKRNE LAQ+GDEIELDIEALDTETLWELDRFVTNWKK+V
Sbjct: 417 LGVGLQSLPQEKMPQLVQIIRKRNEHLAQDGDEIELDIEALDTETLWELDRFVTNWKKMV 476

Query: 98  SKTKRQVLMENY------SAVPAATTDTDEA---PVSNRND 3
           SKTKRQ LM N       +A  AATT   EA     S +ND
Sbjct: 477 SKTKRQALMNNLGPPSASAAASAATTSVAEADGPTTSEKND 517


>emb|CAD43285.1| bromodomain-containing RNA-binding protein 2 [Nicotiana
           benthamiana]
          Length = 613

 Score =  196 bits (498), Expect = 3e-48
 Identities = 118/222 (53%), Positives = 134/222 (60%), Gaps = 21/222 (9%)
 Frame = -1

Query: 617 QGSSWNEIXXXXXXXXXXXXKTNLINSIPRKVEKIPEPVLKP-----------NHSTGSN 471
           QGSSWN I                    P +V+K P+P   P           NHS+ S 
Sbjct: 316 QGSSWNHIPT------------------PERVKK-PKPTPAPHISKKQERMMQNHSSAST 356

Query: 470 PSNSRSA----------QSPVRSPSPVKARPVKEQQVKPEKPVGHVKGASTTRLPKPRAK 321
           PS               QSP+ +PSPV+A P      KP+  V   K     + PKPRAK
Sbjct: 357 PSLPVQQPPDNPPVVQQQSPLSTPSPVRAPPA----AKPQSSVA-AKVPPMEKQPKPRAK 411

Query: 320 DPNKREMSMDEKQRLGVGLQSLPQEKMPQLVQIIRKRNEQLAQEGDEIELDIEALDTETL 141
           DPNKREMSM+EK +LGVGLQSLPQEKMPQLVQIIRKRNE LAQ+GDEIELDIEALDTETL
Sbjct: 412 DPNKREMSMEEKHKLGVGLQSLPQEKMPQLVQIIRKRNEHLAQDGDEIELDIEALDTETL 471

Query: 140 WELDRFVTNWKKLVSKTKRQVLMENYSAVPAATTDTDEAPVS 15
           WELDRFVTNWKK+VSKTKRQ L+ N    P+A+     A  S
Sbjct: 472 WELDRFVTNWKKMVSKTKRQALINNLGQPPSASAAASAATTS 513


>emb|CAD43287.1| bromodomain-containing RNA-binding protein 2 [Nicotiana tabacum]
          Length = 616

 Score =  195 bits (495), Expect = 6e-48
 Identities = 117/223 (52%), Positives = 135/223 (60%), Gaps = 21/223 (9%)
 Frame = -1

Query: 617 QGSSWNEIXXXXXXXXXXXXKTNLINSIPRKVEKIPEPVLKP-----------NHSTGSN 471
           QGSSWN I                    P +V+K P+P   P           NHS+ S 
Sbjct: 316 QGSSWNHIPT------------------PERVKK-PKPTPAPHISKKQERMMQNHSSAST 356

Query: 470 PSNSRSA----------QSPVRSPSPVKARPVKEQQVKPEKPVGHVKGASTTRLPKPRAK 321
           PS               QSP+ +PSPV+A P      KP+  V   K     + PKPRAK
Sbjct: 357 PSLPVQQPPDNPPVVRQQSPLSTPSPVRAPPA----AKPQSSVA-AKVPPMGKQPKPRAK 411

Query: 320 DPNKREMSMDEKQRLGVGLQSLPQEKMPQLVQIIRKRNEQLAQEGDEIELDIEALDTETL 141
           DPNKREMSM+EK +LGVGLQSLPQEKMPQLVQIIRKRNE LAQ+GDEIELDIEALDTETL
Sbjct: 412 DPNKREMSMEEKHKLGVGLQSLPQEKMPQLVQIIRKRNEHLAQDGDEIELDIEALDTETL 471

Query: 140 WELDRFVTNWKKLVSKTKRQVLMENYSAVPAATTDTDEAPVSN 12
           WELDRFVTNWKK+VSKTKRQ L+ N    P+A+     A  ++
Sbjct: 472 WELDRFVTNWKKMVSKTKRQALINNLGQPPSASAAASAATTTS 514


>emb|CAD43286.1| bromodomain-containing RNA-binding protein 1 [Nicotiana tabacum]
          Length = 617

 Score =  195 bits (495), Expect = 6e-48
 Identities = 117/223 (52%), Positives = 135/223 (60%), Gaps = 21/223 (9%)
 Frame = -1

Query: 617 QGSSWNEIXXXXXXXXXXXXKTNLINSIPRKVEKIPEPVLKP-----------NHSTGSN 471
           QGSSWN I                    P +V+K P+P   P           NHS+ S 
Sbjct: 317 QGSSWNHIPT------------------PERVKK-PKPTPAPHISKKQERMMQNHSSAST 357

Query: 470 PSNSRSA----------QSPVRSPSPVKARPVKEQQVKPEKPVGHVKGASTTRLPKPRAK 321
           PS               QSP+ +PSPV+A P      KP+  V   K     + PKPRAK
Sbjct: 358 PSLPVQQPPDNPPVVRQQSPLSTPSPVRAPPA----AKPQSSVA-AKVPPMGKQPKPRAK 412

Query: 320 DPNKREMSMDEKQRLGVGLQSLPQEKMPQLVQIIRKRNEQLAQEGDEIELDIEALDTETL 141
           DPNKREMSM+EK +LGVGLQSLPQEKMPQLVQIIRKRNE LAQ+GDEIELDIEALDTETL
Sbjct: 413 DPNKREMSMEEKHKLGVGLQSLPQEKMPQLVQIIRKRNEHLAQDGDEIELDIEALDTETL 472

Query: 140 WELDRFVTNWKKLVSKTKRQVLMENYSAVPAATTDTDEAPVSN 12
           WELDRFVTNWKK+VSKTKRQ L+ N    P+A+     A  ++
Sbjct: 473 WELDRFVTNWKKMVSKTKRQALINNLGQPPSASAAASAATTTS 515