BLASTX nr result

ID: Bupleurum21_contig00003043 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00003043
         (491 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272299.1| PREDICTED: high mobility group-like isoform ...   141   6e-32
ref|XP_003631923.1| PREDICTED: high mobility group B2 protein-li...   135   5e-30
ref|XP_002280084.2| PREDICTED: high mobility group B2 protein-li...   135   5e-30
emb|CBI37645.3| unnamed protein product [Vitis vinifera]              135   5e-30
gb|ABK21026.1| unknown [Picea sitchensis] gi|116782574|gb|ABK225...   133   1e-29

>ref|XP_002272299.1| PREDICTED: high mobility group-like isoform 1 [Vitis vinifera]
           gi|359491843|ref|XP_003634333.1| PREDICTED: high
           mobility group-like isoform 2 [Vitis vinifera]
           gi|297745562|emb|CBI40727.3| unnamed protein product
           [Vitis vinifera]
          Length = 153

 Score =  141 bits (355), Expect = 6e-32
 Identities = 71/112 (63%), Positives = 82/112 (73%)
 Frame = -1

Query: 491 GRSKGETKKPESRLXXXXXXXXXXXXXXXXXXXXXXXKDPNKPKRPASAFFVFMEDFRKT 312
           GRSK +TKK +++L                        DPNKPKRPASAFFVFME+FRK 
Sbjct: 4   GRSKSDTKKADAKLSVKKGAAATKAGKKTKKEKPVK--DPNKPKRPASAFFVFMEEFRKQ 61

Query: 311 YKEKHPNNKSVSVVGKAGGDKWKSMSESEKAPYVAKAERRKADYDKTILAYN 156
           YKEKHP+NKSVSVVGKAGGDKWKSMSE+EKAPYVAKAE+RK +Y+K + AYN
Sbjct: 62  YKEKHPSNKSVSVVGKAGGDKWKSMSEAEKAPYVAKAEKRKVEYEKNMKAYN 113


>ref|XP_003631923.1| PREDICTED: high mobility group B2 protein-like isoform 2 [Vitis
           vinifera]
          Length = 125

 Score =  135 bits (339), Expect = 5e-30
 Identities = 62/74 (83%), Positives = 70/74 (94%)
 Frame = -1

Query: 377 DPNKPKRPASAFFVFMEDFRKTYKEKHPNNKSVSVVGKAGGDKWKSMSESEKAPYVAKAE 198
           DPNKPKRPASAFFVFME+FRK YKEKHP NKSVSVVGKAGGDKWKS+SE+EKAPYVAKAE
Sbjct: 43  DPNKPKRPASAFFVFMEEFRKQYKEKHPANKSVSVVGKAGGDKWKSLSEAEKAPYVAKAE 102

Query: 197 RRKADYDKTILAYN 156
           +RK +Y+K++ AYN
Sbjct: 103 KRKTEYNKSMQAYN 116


>ref|XP_002280084.2| PREDICTED: high mobility group B2 protein-like isoform 1 [Vitis
           vinifera]
          Length = 156

 Score =  135 bits (339), Expect = 5e-30
 Identities = 62/74 (83%), Positives = 70/74 (94%)
 Frame = -1

Query: 377 DPNKPKRPASAFFVFMEDFRKTYKEKHPNNKSVSVVGKAGGDKWKSMSESEKAPYVAKAE 198
           DPNKPKRPASAFFVFME+FRK YKEKHP NKSVSVVGKAGGDKWKS+SE+EKAPYVAKAE
Sbjct: 43  DPNKPKRPASAFFVFMEEFRKQYKEKHPANKSVSVVGKAGGDKWKSLSEAEKAPYVAKAE 102

Query: 197 RRKADYDKTILAYN 156
           +RK +Y+K++ AYN
Sbjct: 103 KRKTEYNKSMQAYN 116


>emb|CBI37645.3| unnamed protein product [Vitis vinifera]
          Length = 154

 Score =  135 bits (339), Expect = 5e-30
 Identities = 62/74 (83%), Positives = 70/74 (94%)
 Frame = -1

Query: 377 DPNKPKRPASAFFVFMEDFRKTYKEKHPNNKSVSVVGKAGGDKWKSMSESEKAPYVAKAE 198
           DPNKPKRPASAFFVFME+FRK YKEKHP NKSVSVVGKAGGDKWKS+SE+EKAPYVAKAE
Sbjct: 41  DPNKPKRPASAFFVFMEEFRKQYKEKHPANKSVSVVGKAGGDKWKSLSEAEKAPYVAKAE 100

Query: 197 RRKADYDKTILAYN 156
           +RK +Y+K++ AYN
Sbjct: 101 KRKTEYNKSMQAYN 114


>gb|ABK21026.1| unknown [Picea sitchensis] gi|116782574|gb|ABK22556.1| unknown
           [Picea sitchensis] gi|116782678|gb|ABK22606.1| unknown
           [Picea sitchensis] gi|116782786|gb|ABK22657.1| unknown
           [Picea sitchensis] gi|116782898|gb|ABK22712.1| unknown
           [Picea sitchensis] gi|116791878|gb|ABK26144.1| unknown
           [Picea sitchensis] gi|148907501|gb|ABR16881.1| unknown
           [Picea sitchensis] gi|224284566|gb|ACN40016.1| unknown
           [Picea sitchensis] gi|224285212|gb|ACN40332.1| unknown
           [Picea sitchensis] gi|224286734|gb|ACN41070.1| unknown
           [Picea sitchensis]
          Length = 157

 Score =  133 bits (335), Expect = 1e-29
 Identities = 62/74 (83%), Positives = 69/74 (93%)
 Frame = -1

Query: 377 DPNKPKRPASAFFVFMEDFRKTYKEKHPNNKSVSVVGKAGGDKWKSMSESEKAPYVAKAE 198
           DPNKPKRPASAFFVFMEDFRKTYKEK+PN KSVSVVGKAGGDKWKSMSE++KAPYVAKA 
Sbjct: 48  DPNKPKRPASAFFVFMEDFRKTYKEKNPNVKSVSVVGKAGGDKWKSMSEADKAPYVAKAG 107

Query: 197 RRKADYDKTILAYN 156
           +RK +Y+K + AYN
Sbjct: 108 KRKTEYEKNMAAYN 121


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