BLASTX nr result
ID: Bupleurum21_contig00002922
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00002922
(672 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota] 336 2e-90
dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum] 328 6e-88
gb|AAF66825.1| poly(A)-binding protein [Nicotiana tabacum] 327 2e-87
emb|CBI19489.3| unnamed protein product [Vitis vinifera] 317 2e-84
ref|XP_002284923.1| PREDICTED: polyadenylate-binding protein 2 [... 317 2e-84
>gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 336 bits (862), Expect = 2e-90
Identities = 166/180 (92%), Positives = 172/180 (95%)
Frame = +3
Query: 3 DALNGKKFDDKEWYVGKAQKKSERETELKSRFEQTAKEQVDKFQGVNLYVKNLDDTIDDE 182
DALNGKKFDDKEWYVGKAQKKSERE ELKSRFEQT KEQVDK+QGVNLYVKNLDDTIDDE
Sbjct: 277 DALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDE 336
Query: 183 KLKELFSDFGTISSCKVMRDPSGISRGSGFVAFSTPEEASRALSEMNGKMIVSKPLYVAL 362
KLKELFS++GTI+SCKVMRDPSGISRGSGFVAFSTPEEASRAL EMNGKMIVSKPLYVAL
Sbjct: 337 KLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAL 396
Query: 363 AQRKEERRARLQAQFSQMRPVAMAASMAPRMPIYPPGAPGMGQQLFYGQAPPAMISPQLG 542
AQRKEERRARLQAQFSQMRPVAM SM PRMP+Y PGAPGMGQQLFYGQAPPAMI+PQ G
Sbjct: 397 AQRKEERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQLFYGQAPPAMIAPQAG 456
Score = 103 bits (257), Expect = 3e-20
Identities = 55/138 (39%), Positives = 83/138 (60%), Gaps = 1/138 (0%)
Frame = +3
Query: 3 DALNGKKFDDKEWYVGKAQKKSERETEL-KSRFEQTAKEQVDKFQGVNLYVKNLDDTIDD 179
D LNG +DK+ YVG +K +R++E+ K++F N+YVKNL D+ +
Sbjct: 186 DKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTKFN-------------NIYVKNLSDSTSE 232
Query: 180 EKLKELFSDFGTISSCKVMRDPSGISRGSGFVAFSTPEEASRALSEMNGKMIVSKPLYVA 359
+ L++ F ++GTI+S VMRD G S+ GFV F PE+A++A+ +NGK K YV
Sbjct: 233 DDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVG 292
Query: 360 LAQRKEERRARLQAQFSQ 413
AQ+K ER L+++F Q
Sbjct: 293 KAQKKSEREVELKSRFEQ 310
Score = 82.0 bits (201), Expect = 9e-14
Identities = 40/102 (39%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Frame = +3
Query: 93 RFEQTAKEQVDKFQGV-NLYVKNLDDTIDDEKLKELFSDFGTISSCKVMRDPSGISRGSG 269
R + ++ D+ G N+++KNLD +ID + L E FS FGTI SCK+ D SG S+G G
Sbjct: 112 RVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYG 171
Query: 270 FVAFSTPEEASRALSEMNGKMIVSKPLYVALAQRKEERRARL 395
FV + + E A A+ ++NG ++ K +YV + RK++R + +
Sbjct: 172 FVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEM 213
>dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 657
Score = 328 bits (841), Expect = 6e-88
Identities = 161/180 (89%), Positives = 172/180 (95%)
Frame = +3
Query: 3 DALNGKKFDDKEWYVGKAQKKSERETELKSRFEQTAKEQVDKFQGVNLYVKNLDDTIDDE 182
++LNGKKFDDKEWYVGKAQKKSERE ELKS+FEQTAKE VDK+QG+NLYVKNLDDTIDDE
Sbjct: 275 ESLNGKKFDDKEWYVGKAQKKSEREQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDE 334
Query: 183 KLKELFSDFGTISSCKVMRDPSGISRGSGFVAFSTPEEASRALSEMNGKMIVSKPLYVAL 362
KLKELFS+FGTI+SCKVMRDPSGISRGSGFVAFST EEASRALSEMNGKMIVSKPLYVAL
Sbjct: 335 KLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVAL 394
Query: 363 AQRKEERRARLQAQFSQMRPVAMAASMAPRMPIYPPGAPGMGQQLFYGQAPPAMISPQLG 542
AQRKEERRA+LQAQFSQ+RPVAM S+APRMPIYPPGAPG+GQQLFYGQ PPAMI PQ G
Sbjct: 395 AQRKEERRAKLQAQFSQLRPVAMPPSLAPRMPIYPPGAPGIGQQLFYGQGPPAMIPPQAG 454
Score = 103 bits (257), Expect = 3e-20
Identities = 57/137 (41%), Positives = 82/137 (59%)
Frame = +3
Query: 3 DALNGKKFDDKEWYVGKAQKKSERETELKSRFEQTAKEQVDKFQGVNLYVKNLDDTIDDE 182
D LNG +DK+ YVG +K ERE+ + KFQ N+YVKNL ++ D+
Sbjct: 184 DKLNGMLMNDKQVYVGHFLRKQERESTTG----------MTKFQ--NVYVKNLSESTTDD 231
Query: 183 KLKELFSDFGTISSCKVMRDPSGISRGSGFVAFSTPEEASRALSEMNGKMIVSKPLYVAL 362
+LK++F +FG I+S VMRD G S+ GF+ F T E+A++A+ +NGK K YV
Sbjct: 232 ELKKVFGEFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVESLNGKKFDDKEWYVGK 291
Query: 363 AQRKEERRARLQAQFSQ 413
AQ+K ER L+++F Q
Sbjct: 292 AQKKSEREQELKSKFEQ 308
Score = 77.4 bits (189), Expect = 2e-12
Identities = 36/88 (40%), Positives = 55/88 (62%)
Frame = +3
Query: 126 KFQGVNLYVKNLDDTIDDEKLKELFSDFGTISSCKVMRDPSGISRGSGFVAFSTPEEASR 305
K N+++KNLD +ID++ L + FS FG I SCK+ D +G S+G GFV + E A
Sbjct: 122 KSGSANIFIKNLDKSIDNKALHDTFSSFGNILSCKIATDSNGQSKGYGFVQYDNEESAQG 181
Query: 306 ALSEMNGKMIVSKPLYVALAQRKEERRA 389
A+ ++NG ++ K +YV RK+ER +
Sbjct: 182 AIDKLNGMLMNDKQVYVGHFLRKQERES 209
>gb|AAF66825.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 479
Score = 327 bits (837), Expect = 2e-87
Identities = 160/180 (88%), Positives = 172/180 (95%)
Frame = +3
Query: 3 DALNGKKFDDKEWYVGKAQKKSERETELKSRFEQTAKEQVDKFQGVNLYVKNLDDTIDDE 182
++LNGKKFDDKEWYVGKAQKKSERE ELKS+FEQTAKE VDK+QG+NLYVKNLDDTIDDE
Sbjct: 97 ESLNGKKFDDKEWYVGKAQKKSEREQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDE 156
Query: 183 KLKELFSDFGTISSCKVMRDPSGISRGSGFVAFSTPEEASRALSEMNGKMIVSKPLYVAL 362
KLKELFS+FGTI+SCKVMRDPSGISRGSGFVAFST EEASRALSEMNGKMIVSKPLYVAL
Sbjct: 157 KLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVAL 216
Query: 363 AQRKEERRARLQAQFSQMRPVAMAASMAPRMPIYPPGAPGMGQQLFYGQAPPAMISPQLG 542
AQRKEERRA+L+AQFSQ+RPVAM S+APRMPIYPPGAPG+GQQLFYGQ PPAMI PQ G
Sbjct: 217 AQRKEERRAKLRAQFSQLRPVAMPPSLAPRMPIYPPGAPGIGQQLFYGQGPPAMIPPQAG 276
Score = 102 bits (254), Expect = 7e-20
Identities = 57/137 (41%), Positives = 81/137 (59%)
Frame = +3
Query: 3 DALNGKKFDDKEWYVGKAQKKSERETELKSRFEQTAKEQVDKFQGVNLYVKNLDDTIDDE 182
D LNG +DK+ YVG +K ERE+ + KFQ N+YVKNL ++ D+
Sbjct: 6 DKLNGMLMNDKQVYVGHFLRKQERESTTG----------MTKFQ--NVYVKNLSESTTDD 53
Query: 183 KLKELFSDFGTISSCKVMRDPSGISRGSGFVAFSTPEEASRALSEMNGKMIVSKPLYVAL 362
LK++F +FG I+S VMRD G S+ GF+ F T E+A++A+ +NGK K YV
Sbjct: 54 GLKKVFGEFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVESLNGKKFDDKEWYVGK 113
Query: 363 AQRKEERRARLQAQFSQ 413
AQ+K ER L+++F Q
Sbjct: 114 AQKKSEREQELKSKFEQ 130
>emb|CBI19489.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 317 bits (811), Expect = 2e-84
Identities = 154/180 (85%), Positives = 169/180 (93%)
Frame = +3
Query: 3 DALNGKKFDDKEWYVGKAQKKSERETELKSRFEQTAKEQVDKFQGVNLYVKNLDDTIDDE 182
+ALNGKKFD+KEWYVGKAQKK ERE ELK RFEQ+ KE VDKFQGVNLY+KNLDD+I D+
Sbjct: 255 EALNGKKFDEKEWYVGKAQKKYERELELKGRFEQSMKEVVDKFQGVNLYIKNLDDSIGDD 314
Query: 183 KLKELFSDFGTISSCKVMRDPSGISRGSGFVAFSTPEEASRALSEMNGKMIVSKPLYVAL 362
KLKELFS+FGTI+SCKVMRDPSGISRGSGFVAFST EEASRAL+EMNGKM+VSKPLYVAL
Sbjct: 315 KLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALTEMNGKMVVSKPLYVAL 374
Query: 363 AQRKEERRARLQAQFSQMRPVAMAASMAPRMPIYPPGAPGMGQQLFYGQAPPAMISPQLG 542
AQRKEERRARLQAQFSQMRPV+MA S+APRMP+YPPGAPG+GQQLFYGQ PPA+I PQ G
Sbjct: 375 AQRKEERRARLQAQFSQMRPVSMAPSVAPRMPMYPPGAPGLGQQLFYGQGPPAIIPPQAG 434
Score = 99.8 bits (247), Expect = 4e-19
Identities = 57/138 (41%), Positives = 79/138 (57%), Gaps = 1/138 (0%)
Frame = +3
Query: 3 DALNGKKFDDKEWYVGKAQKKSERETEL-KSRFEQTAKEQVDKFQGVNLYVKNLDDTIDD 179
D LNG +DK+ YVG+ +K ERET L K++F N+YVKNL ++ +
Sbjct: 164 DKLNGMLINDKQVYVGQFLRKQERETALNKTKFN-------------NVYVKNLSESTTE 210
Query: 180 EKLKELFSDFGTISSCKVMRDPSGISRGSGFVAFSTPEEASRALSEMNGKMIVSKPLYVA 359
E LK +F +FG I+S VMRD G S+ GFV F ++A+ A+ +NGK K YV
Sbjct: 211 EDLKNIFGEFGIITSVVVMRDGDGKSKCFGFVNFENADDAAEAVEALNGKKFDEKEWYVG 270
Query: 360 LAQRKEERRARLQAQFSQ 413
AQ+K ER L+ +F Q
Sbjct: 271 KAQKKYERELELKGRFEQ 288
Score = 84.7 bits (208), Expect = 1e-14
Identities = 40/85 (47%), Positives = 55/85 (64%)
Frame = +3
Query: 141 NLYVKNLDDTIDDEKLKELFSDFGTISSCKVMRDPSGISRGSGFVAFSTPEEASRALSEM 320
N+++KNLD +ID++ L + FS FG I SCK+ DPSG S+G GFV F E A A+ ++
Sbjct: 107 NIFIKNLDKSIDNKALHDTFSAFGNILSCKIATDPSGQSKGYGFVQFDNEESAQNAIDKL 166
Query: 321 NGKMIVSKPLYVALAQRKEERRARL 395
NG +I K +YV RK+ER L
Sbjct: 167 NGMLINDKQVYVGQFLRKQERETAL 191
>ref|XP_002284923.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147773643|emb|CAN76464.1| hypothetical protein
VITISV_017035 [Vitis vinifera]
Length = 640
Score = 317 bits (811), Expect = 2e-84
Identities = 154/180 (85%), Positives = 169/180 (93%)
Frame = +3
Query: 3 DALNGKKFDDKEWYVGKAQKKSERETELKSRFEQTAKEQVDKFQGVNLYVKNLDDTIDDE 182
+ALNGKKFD+KEWYVGKAQKK ERE ELK RFEQ+ KE VDKFQGVNLY+KNLDD+I D+
Sbjct: 255 EALNGKKFDEKEWYVGKAQKKYERELELKGRFEQSMKEVVDKFQGVNLYIKNLDDSIGDD 314
Query: 183 KLKELFSDFGTISSCKVMRDPSGISRGSGFVAFSTPEEASRALSEMNGKMIVSKPLYVAL 362
KLKELFS+FGTI+SCKVMRDPSGISRGSGFVAFST EEASRAL+EMNGKM+VSKPLYVAL
Sbjct: 315 KLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALTEMNGKMVVSKPLYVAL 374
Query: 363 AQRKEERRARLQAQFSQMRPVAMAASMAPRMPIYPPGAPGMGQQLFYGQAPPAMISPQLG 542
AQRKEERRARLQAQFSQMRPV+MA S+APRMP+YPPGAPG+GQQLFYGQ PPA+I PQ G
Sbjct: 375 AQRKEERRARLQAQFSQMRPVSMAPSVAPRMPMYPPGAPGLGQQLFYGQGPPAIIPPQAG 434
Score = 99.8 bits (247), Expect = 4e-19
Identities = 57/138 (41%), Positives = 79/138 (57%), Gaps = 1/138 (0%)
Frame = +3
Query: 3 DALNGKKFDDKEWYVGKAQKKSERETEL-KSRFEQTAKEQVDKFQGVNLYVKNLDDTIDD 179
D LNG +DK+ YVG+ +K ERET L K++F N+YVKNL ++ +
Sbjct: 164 DKLNGMLINDKQVYVGQFLRKQERETALNKTKFN-------------NVYVKNLSESTTE 210
Query: 180 EKLKELFSDFGTISSCKVMRDPSGISRGSGFVAFSTPEEASRALSEMNGKMIVSKPLYVA 359
E LK +F +FG I+S VMRD G S+ GFV F ++A+ A+ +NGK K YV
Sbjct: 211 EDLKNIFGEFGIITSVVVMRDGDGKSKCFGFVNFENADDAAEAVEALNGKKFDEKEWYVG 270
Query: 360 LAQRKEERRARLQAQFSQ 413
AQ+K ER L+ +F Q
Sbjct: 271 KAQKKYERELELKGRFEQ 288
Score = 84.7 bits (208), Expect = 1e-14
Identities = 40/85 (47%), Positives = 55/85 (64%)
Frame = +3
Query: 141 NLYVKNLDDTIDDEKLKELFSDFGTISSCKVMRDPSGISRGSGFVAFSTPEEASRALSEM 320
N+++KNLD +ID++ L + FS FG I SCK+ DPSG S+G GFV F E A A+ ++
Sbjct: 107 NIFIKNLDKSIDNKALHDTFSAFGNILSCKIATDPSGQSKGYGFVQFDNEESAQNAIDKL 166
Query: 321 NGKMIVSKPLYVALAQRKEERRARL 395
NG +I K +YV RK+ER L
Sbjct: 167 NGMLINDKQVYVGQFLRKQERETAL 191