BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00002869
         (409 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative rib...    77   1e-12
ref|XP_002522452.1| nucleic acid binding protein, putative [Rici...    74   1e-11
ref|XP_002533006.1| RNA binding protein, putative [Ricinus commu...    71   1e-10
ref|XP_002525961.1| hypothetical protein RCOM_0596960 [Ricinus c...    69   4e-10
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...    68   7e-10

>ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein
           At1g65750-like [Vitis vinifera]
          Length = 820

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 37/113 (32%), Positives = 52/113 (46%)
 Frame = +2

Query: 35  LPTKDLLRLKRVPVNELCPTCNDLPETILHTLVSCPYAASCWSRVHIQPVHGEFHSFYEW 214
           LPT+  L ++ V     CP C    ET LH LV C  A   W    +  + G F SF +W
Sbjct: 532 LPTRFALTIRHVDTPMCCPICRSELETTLHALVECVAARDVWDESGLAMLQGNFGSFVDW 591

Query: 215 LQLVFEQQEKENILTSVMFCWMLWKHRNELVWNQRSLEISEIVESTKSILNQW 373
           L  +F   +       +  CW LW  RN++VWN R     ++V    ++L  W
Sbjct: 592 LATMFAYCDFVVFAKYLAVCWGLWWRRNDVVWNGRIWHSQQVVNGCFTMLESW 644


>ref|XP_002522452.1| nucleic acid binding protein, putative [Ricinus communis]
           gi|223538337|gb|EEF39944.1| nucleic acid binding
           protein, putative [Ricinus communis]
          Length = 483

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 35/121 (28%), Positives = 57/121 (47%)
 Frame = +2

Query: 23  LHSGLPTKDLLRLKRVPVNELCPTCNDLPETILHTLVSCPYAASCWSRVHIQPVHGEFHS 202
           L + LP +  L +++V  +  CP C   PETI+H LV C      W  V++     +  +
Sbjct: 204 LTNRLPVRTNLVMRKVTEDSSCPCCVSQPETIMHILVLCDVTTQSWKYVNLYQFLSQVSN 263

Query: 203 FYEWLQLVFEQQEKENILTSVMFCWMLWKHRNELVWNQRSLEISEIVESTKSILNQWNSV 382
             E  + VFE  +   + + V+  W LW + N++VWN + L    +     S L QW   
Sbjct: 264 LLEGARSVFEHFDDSIVASFVVLWWSLWTNMNDVVWNGKKLSWRAVASRASSFLFQWGKA 323

Query: 383 Q 385
           +
Sbjct: 324 R 324


>ref|XP_002533006.1| RNA binding protein, putative [Ricinus communis]
           gi|223527217|gb|EEF29381.1| RNA binding protein,
           putative [Ricinus communis]
          Length = 197

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 35/107 (32%), Positives = 55/107 (51%)
 Frame = +2

Query: 53  LRLKRVPVNELCPTCNDLPETILHTLVSCPYAASCWSRVHIQPVHGEFHSFYEWLQLVFE 232
           L LKRV V +LCP C+   E+I + L+ C +    W    +        S  +WLQ +F 
Sbjct: 4   LVLKRVNVQDLCPLCSKPGESIYYALIDCSFVKEVWVISVLISRGNRNGSICDWLQEMFT 63

Query: 233 QQEKENILTSVMFCWMLWKHRNELVWNQRSLEISEIVESTKSILNQW 373
           + EK       +  W LW HRNE+VW  +  + ++IV+   + L++W
Sbjct: 64  KFEKSTWGCIAVLVWNLWIHRNEVVWYSKRKQPTQIVDGAVTYLHKW 110


>ref|XP_002525961.1| hypothetical protein RCOM_0596960 [Ricinus communis]
           gi|223534693|gb|EEF36385.1| hypothetical protein
           RCOM_0596960 [Ricinus communis]
          Length = 270

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 32/106 (30%), Positives = 50/106 (47%)
 Frame = +2

Query: 56  RLKRVPVNELCPTCNDLPETILHTLVSCPYAASCWSRVHIQPVHGEFHSFYEWLQLVFEQ 235
           R  R+    LCP C++  E+I H L+ C +    W    +        S  +WLQ +F +
Sbjct: 73  RCLRIDNQNLCPLCSNPGESIYHALIDCSFVKEVWVISVLVSRGNRNGSICDWLQEIFTK 132

Query: 236 QEKENILTSVMFCWMLWKHRNELVWNQRSLEISEIVESTKSILNQW 373
            +K          W LW HRNE+VWN +  +  +IV+   + L +W
Sbjct: 133 FDKSTWHCIAAIVWNLWIHRNEVVWNSKRKQPRQIVDGAVTYLQRW 178


>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
            42.57) [Arabidopsis thaliana]
          Length = 1662

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 43/135 (31%), Positives = 59/135 (43%), Gaps = 18/135 (13%)
 Frame = +2

Query: 23   LHSGLPTKDLLRLKRVPVNELCPTCNDLPETILHTLVSCPYAASCWSRVHIQPVHGEFHS 202
            +   LPT+  L  + + ++  CP C    ETI H L +CPYAAS W             S
Sbjct: 1379 ISKALPTRSRLLTRGMDIDPHCPRCPTEEETINHVLFTCPYAASIWGL-----------S 1427

Query: 203  FYEWLQ-LVFEQQEKENI-----------------LTSVMFCWMLWKHRNELVWNQRSLE 328
             + WL    F Q  +ENI                 L      W LWK RN LV+N+ S  
Sbjct: 1428 NFPWLPGHTFSQDTEENISFLINSFSNNTLNTEQRLAPFWLIWRLWKARNNLVFNKFSES 1487

Query: 329  ISEIVESTKSILNQW 373
             S +V  T++ +N+W
Sbjct: 1488 CSRVVTQTEAEVNEW 1502