BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00002856
         (1127 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276856.1| PREDICTED: putative tRNA pseudouridine synth...   342   1e-91
emb|CAN68579.1| hypothetical protein VITISV_034891 [Vitis vinifera]   342   1e-91
emb|CBI15850.3| unnamed protein product [Vitis vinifera]              342   1e-91
ref|XP_002517734.1| pseudouridylate synthase, putative [Ricinus ...   338   2e-90
ref|XP_003518334.1| PREDICTED: putative tRNA pseudouridine synth...   325   1e-86

>ref|XP_002276856.1| PREDICTED: putative tRNA pseudouridine synthase-like [Vitis vinifera]
          Length = 564

 Score =  342 bits (877), Expect = 1e-91
 Identities = 179/311 (57%), Positives = 217/311 (69%), Gaps = 4/311 (1%)
 Frame = +2

Query: 206  RWEPLRKKKVVMRVGYIGTDYRGLQKQLDEHSQSTIEGELEVAIHKAGGIRDSNFGYLHK 385
            +WE  RKKKVVMRVGY+GT+YRGLQ Q DE S STIEGELE A+ KAGGIRDSN+G LHK
Sbjct: 56   KWESFRKKKVVMRVGYVGTNYRGLQMQRDESSLSTIEGELETAVFKAGGIRDSNYGNLHK 115

Query: 386  IGWARSSRTDKGVHSLATMISLKMEIPAYAWKEDPNGIFLANHINSYLPPTIRVFGVLPS 565
            IGW RSSRTDKGVHSLATMISLKMEIPA AWKEDPNGI LAN++N +LP  I+VF +LPS
Sbjct: 116  IGWDRSSRTDKGVHSLATMISLKMEIPANAWKEDPNGIALANYVNFHLPNNIKVFSILPS 175

Query: 566  QKGFDARRECNIRKYSYLLPAEVIGIKDSLSATEIDRHLSDFNNILSSFEGNYPFHNYTV 745
            Q+ FDARREC++R+YSYLLPAE+IGIK + SA+EID H+++FN+IL++FEG +PF NYT+
Sbjct: 176  QRSFDARRECDLRRYSYLLPAEIIGIKSNSSASEIDHHIAEFNDILNTFEGEHPFQNYTI 235

Query: 746  RSKYRKPSYAKSS-GNCTEPRVAVSTNQ--ISHLKCRDSDEAVXXXXXXXXXXXXXXXXX 916
            RSKYRK   AK S GN    R A S+ +   S  +  D +E                   
Sbjct: 236  RSKYRKQFPAKQSPGNGGVFRRAKSSGEASTSEFEVSDGEENSGINGVISSDYDEGENQN 295

Query: 917  XVLGTD-VEEMKSKQDLPKNXXXXXXXXXXXXXRWLYEPDMKDKLSASHFRRIFHCSCGK 1093
                T  VE      +  +              RWL+ PD +D++SASHFR+IF+CSCGK
Sbjct: 296  SSESTSFVEHPVGSSNNNEKGLKEQSPKLVVRARWLHGPDERDRISASHFRKIFNCSCGK 355

Query: 1094 LEQVLGTSYVE 1126
            LE+ LG  YVE
Sbjct: 356  LEKFLGLDYVE 366


>emb|CAN68579.1| hypothetical protein VITISV_034891 [Vitis vinifera]
          Length = 602

 Score =  342 bits (877), Expect = 1e-91
 Identities = 179/311 (57%), Positives = 217/311 (69%), Gaps = 4/311 (1%)
 Frame = +2

Query: 206  RWEPLRKKKVVMRVGYIGTDYRGLQKQLDEHSQSTIEGELEVAIHKAGGIRDSNFGYLHK 385
            +WE  RKKKVVMRVGY+GT+YRGLQ Q DE S STIEGELE A+ KAGGIRDSN+G LHK
Sbjct: 56   KWESFRKKKVVMRVGYVGTNYRGLQMQRDESSLSTIEGELETAVFKAGGIRDSNYGNLHK 115

Query: 386  IGWARSSRTDKGVHSLATMISLKMEIPAYAWKEDPNGIFLANHINSYLPPTIRVFGVLPS 565
            IGW RSSRTDKGVHSLATMISLKMEIPA AWKEDPNGI LAN++N +LP  I+VF +LPS
Sbjct: 116  IGWDRSSRTDKGVHSLATMISLKMEIPANAWKEDPNGIALANYVNFHLPNNIKVFSILPS 175

Query: 566  QKGFDARRECNIRKYSYLLPAEVIGIKDSLSATEIDRHLSDFNNILSSFEGNYPFHNYTV 745
            Q+ FDARREC++R+YSYLLPAE+IGIK + SA+EID H+++FN+IL++FEG +PF NYT+
Sbjct: 176  QRSFDARRECDLRRYSYLLPAEIIGIKSNSSASEIDHHIAEFNDILNTFEGEHPFQNYTI 235

Query: 746  RSKYRKPSYAKSS-GNCTEPRVAVSTNQ--ISHLKCRDSDEAVXXXXXXXXXXXXXXXXX 916
            RSKYRK   AK S GN    R A S+ +   S  +  D +E                   
Sbjct: 236  RSKYRKQFPAKQSPGNGGVFRRAKSSGEASTSEFEVSDGEENSGVNGVISSDYDEGENQN 295

Query: 917  XVLGTD-VEEMKSKQDLPKNXXXXXXXXXXXXXRWLYEPDMKDKLSASHFRRIFHCSCGK 1093
                T  VE      +  +              RWL+ PD +D++SASHFR+IF+CSCGK
Sbjct: 296  SSESTSFVEHPVGSSNNNEKGLKEQSSKLVVRARWLHGPDERDRISASHFRKIFNCSCGK 355

Query: 1094 LEQVLGTSYVE 1126
            LE+ LG  YVE
Sbjct: 356  LEKFLGLDYVE 366


>emb|CBI15850.3| unnamed protein product [Vitis vinifera]
          Length = 495

 Score =  342 bits (876), Expect = 1e-91
 Identities = 177/311 (56%), Positives = 220/311 (70%), Gaps = 4/311 (1%)
 Frame = +2

Query: 206  RWEPLRKKKVVMRVGYIGTDYRGLQKQLDEHSQSTIEGELEVAIHKAGGIRDSNFGYLHK 385
            +WE  RKKKVVMRVGY+GT+YRGLQ Q DE S STIEGELE A+ KAGGIRDSN+G LHK
Sbjct: 56   KWESFRKKKVVMRVGYVGTNYRGLQMQRDESSLSTIEGELETAVFKAGGIRDSNYGNLHK 115

Query: 386  IGWARSSRTDKGVHSLATMISLKMEIPAYAWKEDPNGIFLANHINSYLPPTIRVFGVLPS 565
            IGW RSSRTDKGVHSLATMISLKMEIPA AWKEDPNGI LAN++N +LP  I+VF +LPS
Sbjct: 116  IGWDRSSRTDKGVHSLATMISLKMEIPANAWKEDPNGIALANYVNFHLPNNIKVFSILPS 175

Query: 566  QKGFDARRECNIRKYSYLLPAEVIGIKDSLSATEIDRHLSDFNNILSSFEGNYPFHNYTV 745
            Q+ FDARREC++R+YSYLLPAE+IGIK + SA+EID H+++FN+IL++FEG +PF NYT+
Sbjct: 176  QRSFDARRECDLRRYSYLLPAEIIGIKSNSSASEIDHHIAEFNDILNTFEGEHPFQNYTI 235

Query: 746  RSKYRKPSYAKSS----GNCTEPRVAVSTNQISHLKCRDSDEAVXXXXXXXXXXXXXXXX 913
            RSKYRK   AK S    G     + +V ++     + ++S E+                 
Sbjct: 236  RSKYRKQFPAKQSPGNGGVFRRAKSSVISSDYDEGENQNSSEST------------SFVE 283

Query: 914  XXVLGTDVEEMKSKQDLPKNXXXXXXXXXXXXXRWLYEPDMKDKLSASHFRRIFHCSCGK 1093
              V  ++  E   K+  PK              RWL+ PD +D++SASHFR+IF+CSCGK
Sbjct: 284  HPVGSSNNNEKGLKEQSPK---------LVVRARWLHGPDERDRISASHFRKIFNCSCGK 334

Query: 1094 LEQVLGTSYVE 1126
            LE+ LG  YVE
Sbjct: 335  LEKFLGLDYVE 345


>ref|XP_002517734.1| pseudouridylate synthase, putative [Ricinus communis]
            gi|223543132|gb|EEF44666.1| pseudouridylate synthase,
            putative [Ricinus communis]
          Length = 377

 Score =  338 bits (866), Expect = 2e-90
 Identities = 172/307 (56%), Positives = 201/307 (65%)
 Frame = +2

Query: 206  RWEPLRKKKVVMRVGYIGTDYRGLQKQLDEHSQSTIEGELEVAIHKAGGIRDSNFGYLHK 385
            +WEP RKKKVV+RVGY+GTDYRGLQKQ DEHS STIE ELE AI KAGGI DSN+G LHK
Sbjct: 47   KWEPFRKKKVVLRVGYVGTDYRGLQKQEDEHSLSTIEAELECAIFKAGGILDSNYGNLHK 106

Query: 386  IGWARSSRTDKGVHSLATMISLKMEIPAYAWKEDPNGIFLANHINSYLPPTIRVFGVLPS 565
            I WARSSRTDKGVHSLATMIS+KMEIP  AWKEDPNGI LA  +N YLP  IR+F +LPS
Sbjct: 107  IAWARSSRTDKGVHSLATMISMKMEIPENAWKEDPNGIALAECVNYYLPDNIRIFSILPS 166

Query: 566  QKGFDARRECNIRKYSYLLPAEVIGIKDSLSATEIDRHLSDFNNILSSFEGNYPFHNYTV 745
            QK FD RRECN+RKYSYLLPAE+IGIK   ++ EID H+SDFN+IL++FEG +PFHNYT+
Sbjct: 167  QKSFDPRRECNLRKYSYLLPAEIIGIKGHFTSAEIDNHISDFNDILNAFEGEHPFHNYTI 226

Query: 746  RSKYRKPSYAKSSGNCTEPRVAVSTNQISHLKCRDSDEAVXXXXXXXXXXXXXXXXXXVL 925
            RSKYRK      +G   +   + S    S  +  D +E                      
Sbjct: 227  RSKYRKQYPTAITGRVPKRARSSSERSTSESEKSDGEEDYEIDEINIEDHNGSI------ 280

Query: 926  GTDVEEMKSKQDLPKNXXXXXXXXXXXXXRWLYEPDMKDKLSASHFRRIFHCSCGKLEQV 1105
                 + +                     RWLYEPD  D++ ASHFR+IF CSCGKLE  
Sbjct: 281  -QSSSKFRFSNQQKGGVLEQQQYNAGILARWLYEPDETDRIGASHFRKIFRCSCGKLETS 339

Query: 1106 LGTSYVE 1126
             G  +VE
Sbjct: 340  KGFDFVE 346


>ref|XP_003518334.1| PREDICTED: putative tRNA pseudouridine synthase-like [Glycine max]
          Length = 516

 Score =  325 bits (834), Expect = 1e-86
 Identities = 167/311 (53%), Positives = 200/311 (64%)
 Frame = +2

Query: 194  TPNTRWEPLRKKKVVMRVGYIGTDYRGLQKQLDEHSQSTIEGELEVAIHKAGGIRDSNFG 373
            TP+ +WEP  KKKVVMRVGY+GTD+RGLQ Q DEH  ST+E ELE AI  AGG+RDSNFG
Sbjct: 64   TPSEKWEPFLKKKVVMRVGYVGTDFRGLQMQRDEHRLSTVEKELETAIFTAGGMRDSNFG 123

Query: 374  YLHKIGWARSSRTDKGVHSLATMISLKMEIPAYAWKEDPNGIFLANHINSYLPPTIRVFG 553
             L+K+ W RSSRTDKGVHSLATMI+ KMEIP  AWK D  GI LAN INSYLP TIRVF 
Sbjct: 124  DLNKVKWGRSSRTDKGVHSLATMIAFKMEIPENAWKGDDYGIVLANRINSYLPNTIRVFS 183

Query: 554  VLPSQKGFDARRECNIRKYSYLLPAEVIGIKDSLSATEIDRHLSDFNNILSSFEGNYPFH 733
            +LPS K FD RRECN+RKYSYLLPA +IGI+   S  EID H+S+FN+IL+ FEG +PFH
Sbjct: 184  ILPSTKRFDPRRECNLRKYSYLLPAGIIGIQSHFSQDEIDFHISEFNSILNVFEGEHPFH 243

Query: 734  NYTVRSKYRKPSYAKSSGNCTEPRVAVSTNQISHLKCRDSDEAVXXXXXXXXXXXXXXXX 913
            NYTVRSKYRK    + S         + ++ ++     +S+E                  
Sbjct: 244  NYTVRSKYRKKYQVRQSSGNDVMSDRIGSSSLTSACESESEEG--------DDDDFVSGR 295

Query: 914  XXVLGTDVEEMKSKQDLPKNXXXXXXXXXXXXXRWLYEPDMKDKLSASHFRRIFHCSCGK 1093
                    E  K  +    N             +WLYEPD  D+L+ASHFR++F CSCGK
Sbjct: 296  PTTFSDKEESHKPPESSESNGLSSQNSSVVVRAKWLYEPDETDRLNASHFRKVFRCSCGK 355

Query: 1094 LEQVLGTSYVE 1126
            LE  LG  Y+E
Sbjct: 356  LETSLGYDYIE 366