BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00002677
         (1188 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative ...   443   e-132
ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-...   435   e-130
emb|CBI40014.3| unnamed protein product [Vitis vinifera]              435   e-130
emb|CAD20831.2| sigma factor [Spinacia oleracea]                      432   e-128
ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-...   424   e-127

>ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
            gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor
            rpoD1, putative [Ricinus communis]
          Length = 569

 Score =  443 bits (1140), Expect(2) = e-132
 Identities = 228/317 (71%), Positives = 257/317 (81%), Gaps = 1/317 (0%)
 Frame = -1

Query: 1188 AVRSRRQPEXXXXXXXATDRTSANXXXXXXXXXXXXKRAPMQEIDYSDPLRHLRGSTS-S 1012
            AVRSRRQ E       A ++ +++            KR  +QE+DYSDPLR+LRG+TS S
Sbjct: 210  AVRSRRQTERKARRARAVEKAASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTSTS 269

Query: 1011 RLLTAREERELSKGIQVXXXXXXXXXXXXERYGCEPSYRQWAAAAGIDQMTLKKNITHGK 832
            RLLTA EE ELS  IQ             ERYG +P++ QWAAAAG+DQ TL+K I HG 
Sbjct: 270  RLLTASEELELSAAIQDLLKLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGT 329

Query: 831  ICKDKMIKSNVRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 652
            ICKDKMIKSN+RLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Sbjct: 330  ICKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 389

Query: 651  WIKQAVRKSLSDQCRTIRLPFHMVDATYKVKEAKKQLYSENGKHPSNEEVAEATGLTMKR 472
            WIKQAVRKSLSDQ RTIRLPFHMV+ATY+VKEA+KQLYSENG+HP +EEVAEA GL+MKR
Sbjct: 390  WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEAAGLSMKR 449

Query: 471  LETVLLTPKAPRSLDQKFGLNQYMKPSEVISDPEAETSEELLIKQFMKKDLEMVLDTLNA 292
            L  VLLTPKAPRSLDQK G+N  +KPSEVI+DPEAET+EELL+KQFMK+DLE VL+TLN 
Sbjct: 450  LSAVLLTPKAPRSLDQKIGMNMDLKPSEVIADPEAETAEELLMKQFMKQDLEKVLNTLNP 509

Query: 291  REQQVVRWRFGLDDGRM 241
            RE QVVRWRFGL+DGRM
Sbjct: 510  RETQVVRWRFGLEDGRM 526



 Score = 56.2 bits (134), Expect(2) = e-132
 Identities = 27/29 (93%), Positives = 28/29 (96%)
 Frame = -2

Query: 185 DGRMKTLQEIGEIMGVSRERVRQIESCAF 99
           DGRMKTLQEIGEIMGVSRER+RQIES AF
Sbjct: 523 DGRMKTLQEIGEIMGVSRERIRQIESSAF 551


>ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
          Length = 578

 Score =  435 bits (1118), Expect(2) = e-130
 Identities = 221/315 (70%), Positives = 257/315 (81%), Gaps = 1/315 (0%)
 Frame = -1

Query: 1185 VRSRRQPEXXXXXXXATDRTSANXXXXXXXXXXXXKRAPMQEIDYSDPLRHLRGSTS-SR 1009
            VRS RQ E       A ++ SA             KR  +QE+DYSDPLR+LRG+TS SR
Sbjct: 220  VRSNRQVERKARRARAAEKASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSR 279

Query: 1008 LLTAREERELSKGIQVXXXXXXXXXXXXERYGCEPSYRQWAAAAGIDQMTLKKNITHGKI 829
            LLTA EE ELS+GIQ             ER+G +P++ QWAAAAG+DQ TL++   +G  
Sbjct: 280  LLTATEELELSEGIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIR 339

Query: 828  CKDKMIKSNVRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 649
            CKDKMIKSN+RLVISIAKNYQG GMN+QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW
Sbjct: 340  CKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 399

Query: 648  IKQAVRKSLSDQCRTIRLPFHMVDATYKVKEAKKQLYSENGKHPSNEEVAEATGLTMKRL 469
            IKQAVRKSLSDQ RTIRLPFHMV+ATY+VKEA+KQLYSENG+HP+NEEVAEATGL+MKRL
Sbjct: 400  IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 459

Query: 468  ETVLLTPKAPRSLDQKFGLNQYMKPSEVISDPEAETSEELLIKQFMKKDLEMVLDTLNAR 289
              VLLTPKAPRSLDQK G+NQ +KPSEVI+DP+AET+EELLIKQFM++DLE VL++LN R
Sbjct: 460  NAVLLTPKAPRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPR 519

Query: 288  EQQVVRWRFGLDDGR 244
            E+QV+RWR+GL+DGR
Sbjct: 520  EKQVIRWRYGLEDGR 534



 Score = 57.4 bits (137), Expect(2) = e-130
 Identities = 30/47 (63%), Positives = 32/47 (68%)
 Frame = -2

Query: 185 DGRMKTLQEIGEIMGVSRERVRQIESCAFXXXXXXXXXXXXXQYFVS 45
           DGR KTLQEIGE+MGVSRER+RQIESCAF             QY VS
Sbjct: 532 DGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 578


>emb|CBI40014.3| unnamed protein product [Vitis vinifera]
          Length = 575

 Score =  435 bits (1118), Expect(2) = e-130
 Identities = 221/315 (70%), Positives = 257/315 (81%), Gaps = 1/315 (0%)
 Frame = -1

Query: 1185 VRSRRQPEXXXXXXXATDRTSANXXXXXXXXXXXXKRAPMQEIDYSDPLRHLRGSTS-SR 1009
            VRS RQ E       A ++ SA             KR  +QE+DYSDPLR+LRG+TS SR
Sbjct: 217  VRSNRQVERKARRARAAEKASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSR 276

Query: 1008 LLTAREERELSKGIQVXXXXXXXXXXXXERYGCEPSYRQWAAAAGIDQMTLKKNITHGKI 829
            LLTA EE ELS+GIQ             ER+G +P++ QWAAAAG+DQ TL++   +G  
Sbjct: 277  LLTATEELELSEGIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIR 336

Query: 828  CKDKMIKSNVRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 649
            CKDKMIKSN+RLVISIAKNYQG GMN+QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW
Sbjct: 337  CKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 396

Query: 648  IKQAVRKSLSDQCRTIRLPFHMVDATYKVKEAKKQLYSENGKHPSNEEVAEATGLTMKRL 469
            IKQAVRKSLSDQ RTIRLPFHMV+ATY+VKEA+KQLYSENG+HP+NEEVAEATGL+MKRL
Sbjct: 397  IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 456

Query: 468  ETVLLTPKAPRSLDQKFGLNQYMKPSEVISDPEAETSEELLIKQFMKKDLEMVLDTLNAR 289
              VLLTPKAPRSLDQK G+NQ +KPSEVI+DP+AET+EELLIKQFM++DLE VL++LN R
Sbjct: 457  NAVLLTPKAPRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPR 516

Query: 288  EQQVVRWRFGLDDGR 244
            E+QV+RWR+GL+DGR
Sbjct: 517  EKQVIRWRYGLEDGR 531



 Score = 57.4 bits (137), Expect(2) = e-130
 Identities = 30/47 (63%), Positives = 32/47 (68%)
 Frame = -2

Query: 185 DGRMKTLQEIGEIMGVSRERVRQIESCAFXXXXXXXXXXXXXQYFVS 45
           DGR KTLQEIGE+MGVSRER+RQIESCAF             QY VS
Sbjct: 529 DGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 575


>emb|CAD20831.2| sigma factor [Spinacia oleracea]
          Length = 575

 Score =  432 bits (1112), Expect(2) = e-128
 Identities = 222/316 (70%), Positives = 253/316 (80%), Gaps = 1/316 (0%)
 Frame = -1

Query: 1185 VRSRRQPEXXXXXXXATDRTSANXXXXXXXXXXXXKRAPMQEIDYSDPLRHLRGST-SSR 1009
            VRS RQ E       A ++ ++N            KR  +QE+DYSDPLR+LRG+T SSR
Sbjct: 217  VRSTRQGERKARRARAAEKVASNVVSVKVGSNSRKKRTSVQEVDYSDPLRYLRGATNSSR 276

Query: 1008 LLTAREERELSKGIQVXXXXXXXXXXXXERYGCEPSYRQWAAAAGIDQMTLKKNITHGKI 829
            LLT+ EE ELS GIQ              R+G  PS+ QWAAAAGIDQ TL++ + HG  
Sbjct: 277  LLTSSEETELSAGIQDLLKLEKLHDELKVRFGKSPSFVQWAAAAGIDQRTLRRRLNHGTF 336

Query: 828  CKDKMIKSNVRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 649
            CKDKMIKSNVRLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW
Sbjct: 337  CKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 396

Query: 648  IKQAVRKSLSDQCRTIRLPFHMVDATYKVKEAKKQLYSENGKHPSNEEVAEATGLTMKRL 469
            IKQAVRKSLSDQ RTIRLPFHMV+ATY+VKEA+KQL SENGK P+NEEVAEATGL+MKRL
Sbjct: 397  IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGKQPNNEEVAEATGLSMKRL 456

Query: 468  ETVLLTPKAPRSLDQKFGLNQYMKPSEVISDPEAETSEELLIKQFMKKDLEMVLDTLNAR 289
              VL+TPKAPRSLDQK G N  +KPSEVI+DPEAET+E+LL KQFM++DLE VLDTL++R
Sbjct: 457  TAVLMTPKAPRSLDQKIGFNMNLKPSEVIADPEAETAEDLLTKQFMRQDLEKVLDTLSSR 516

Query: 288  EQQVVRWRFGLDDGRM 241
            E+QV+RWRFGL+DGRM
Sbjct: 517  EKQVIRWRFGLEDGRM 532



 Score = 55.5 bits (132), Expect(2) = e-128
 Identities = 26/29 (89%), Positives = 28/29 (96%)
 Frame = -2

Query: 185 DGRMKTLQEIGEIMGVSRERVRQIESCAF 99
           DGRMKTLQEIGE+MGVSRER+RQIES AF
Sbjct: 529 DGRMKTLQEIGELMGVSRERIRQIESSAF 557


>ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
            gi|449473951|ref|XP_004154029.1| PREDICTED: RNA
            polymerase sigma factor sigB-like [Cucumis sativus]
          Length = 580

 Score =  424 bits (1089), Expect(2) = e-127
 Identities = 214/316 (67%), Positives = 254/316 (80%), Gaps = 1/316 (0%)
 Frame = -1

Query: 1185 VRSRRQPEXXXXXXXATDRTSANXXXXXXXXXXXXKRAPMQEIDYSDPLRHLRGSTS-SR 1009
            V+S+RQ E       A ++T  +            KR  +QE+DYSDPLR+LR +T+ SR
Sbjct: 222  VKSKRQTERKARRTRAAEKTVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSR 281

Query: 1008 LLTAREERELSKGIQVXXXXXXXXXXXXERYGCEPSYRQWAAAAGIDQMTLKKNITHGKI 829
            LLTA EE ELS+GIQ             ERYG EP++ QWAAAAG++Q TL+K + +G +
Sbjct: 282  LLTATEELELSEGIQDLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTL 341

Query: 828  CKDKMIKSNVRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 649
            CKDKMIKSN+RLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW
Sbjct: 342  CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 401

Query: 648  IKQAVRKSLSDQCRTIRLPFHMVDATYKVKEAKKQLYSENGKHPSNEEVAEATGLTMKRL 469
            IKQAVRK LSDQ RTIRLPFHMV+ATY+VKEA+KQL  ENG+HP ++E+AEA GL+MKRL
Sbjct: 402  IKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRL 461

Query: 468  ETVLLTPKAPRSLDQKFGLNQYMKPSEVISDPEAETSEELLIKQFMKKDLEMVLDTLNAR 289
              VL+TPKAPRSL+QK G+NQ +KPSEVISDPEAET E++LIKQFMK+DLE VLD+LN R
Sbjct: 462  AAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETCEDMLIKQFMKQDLEKVLDSLNPR 521

Query: 288  EQQVVRWRFGLDDGRM 241
            E+QV+RWRFG++DGRM
Sbjct: 522  EKQVIRWRFGMEDGRM 537



 Score = 60.1 bits (144), Expect(2) = e-127
 Identities = 28/29 (96%), Positives = 29/29 (100%)
 Frame = -2

Query: 185 DGRMKTLQEIGEIMGVSRERVRQIESCAF 99
           DGRMKTLQEIGEIMGVSRER+RQIESCAF
Sbjct: 534 DGRMKTLQEIGEIMGVSRERIRQIESCAF 562