BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00002510
         (1155 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_177984.1| 50S ribosomal protein L13 [Arabidopsis thaliana...   363   3e-98
ref|XP_002887748.1| EMB1473 [Arabidopsis lyrata subsp. lyrata] g...   358   2e-96
gb|ABK96526.1| unknown [Populus trichocarpa x Populus deltoides]      343   6e-92
emb|CBI20115.3| unnamed protein product [Vitis vinifera]              340   3e-91
ref|XP_002285616.1| PREDICTED: 50S ribosomal protein L13, chloro...   340   3e-91

>ref|NP_177984.1| 50S ribosomal protein L13 [Arabidopsis thaliana]
           gi|75314103|sp|Q9SYL9.1|RK13_ARATH RecName: Full=50S
           ribosomal protein L13, chloroplastic; AltName:
           Full=CL13; AltName: Full=Protein EMBRYO DEFECTIVE 1473;
           Flags: Precursor gi|4836870|gb|AAD30573.1|AC007260_4 50S
           Ribosomal protein L13 [Arabidopsis thaliana]
           gi|13878111|gb|AAK44133.1|AF370318_1 putative ribosomal
           protein L13 [Arabidopsis thaliana]
           gi|7572938|emb|CAA60775.1| ribosomal protein L13
           [Arabidopsis thaliana] gi|17104781|gb|AAL34279.1|
           putative ribosomal protein L13 [Arabidopsis thaliana]
           gi|332198009|gb|AEE36130.1| 50S ribosomal protein L13
           [Arabidopsis thaliana]
          Length = 241

 Score =  363 bits (933), Expect = 3e-98
 Identities = 179/237 (75%), Positives = 206/237 (86%), Gaps = 3/237 (1%)
 Frame = +2

Query: 5   SSYGLLAYNTASKSCASPPKTTPFLGFSMA--SKPSICLS-KSNNKRCSQIKCSQEQATT 175
           SS  ++  +++ KS  S  K+ PFLGFS+   SKPS+ +   +N+KR  Q+KC  E  TT
Sbjct: 6   SSSTVILSSSSVKSSGSERKS-PFLGFSLTAISKPSVRVGIYANSKRGLQVKCEAEPTTT 64

Query: 176 TTLVPIEQQWMFDDTQFKGPDIWNTTWYPKAADHINTEKKWYIVDATDKILGRLASTIAI 355
           T+LVP  Q+WMFD+ +  GPDIWNTTWYPKA+DH+NT+K W++VDATDKILGRLASTIA 
Sbjct: 65  TSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVVDATDKILGRLASTIAN 124

Query: 356 HIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYKRHSGRPGGMKVETFDQLQQ 535
           HIRGKNLA+YTPSVDMGAFVIVVNAEKVAVSGKKRNQKLY+RHSGRPGGM VETFDQLQQ
Sbjct: 125 HIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGGMTVETFDQLQQ 184

Query: 536 RIPERILEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIKDKRIQVQK 706
           RIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP+DLPI+DKRIQ+QK
Sbjct: 185 RIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPLDLPIRDKRIQLQK 241


>ref|XP_002887748.1| EMB1473 [Arabidopsis lyrata subsp. lyrata]
           gi|297333589|gb|EFH64007.1| EMB1473 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 242

 Score =  358 bits (918), Expect = 2e-96
 Identities = 173/219 (78%), Positives = 197/219 (89%), Gaps = 4/219 (1%)
 Frame = +2

Query: 62  KTTPFLGFSMA--SKPSICLS-KSNNKRCSQIKCSQEQATT-TTLVPIEQQWMFDDTQFK 229
           + +PFLGFS+   SKPS+ +   +N+KR  Q+KC  E+ TT T+LVP  Q+WMFD+ +  
Sbjct: 24  RKSPFLGFSLTAFSKPSVRVGIYANSKRGLQVKCEAEETTTKTSLVPANQRWMFDEEEAN 83

Query: 230 GPDIWNTTWYPKAADHINTEKKWYIVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGA 409
           GPDIWNTTWYPKA+DH+NT+K W++VDATDKILGRLASTIA HIRGKNLA+YTPSVDMGA
Sbjct: 84  GPDIWNTTWYPKASDHVNTDKPWFVVDATDKILGRLASTIANHIRGKNLASYTPSVDMGA 143

Query: 410 FVIVVNAEKVAVSGKKRNQKLYKRHSGRPGGMKVETFDQLQQRIPERILEHAVRGMLPKG 589
           FVIVVNAEKVAVSGKKRNQKLY+RHSGRPGGM VETFDQLQQRIPERI+EHAVRGMLPKG
Sbjct: 144 FVIVVNAEKVAVSGKKRNQKLYRRHSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKG 203

Query: 590 RLGRALFNHLKVYKGPDHPHEAQKPVDLPIKDKRIQVQK 706
           RLGRALFNHLKVYKGPDHPHEAQKP+DLPI+DKRIQ+QK
Sbjct: 204 RLGRALFNHLKVYKGPDHPHEAQKPLDLPIRDKRIQLQK 242


>gb|ABK96526.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 241

 Score =  343 bits (879), Expect = 6e-92
 Identities = 165/229 (72%), Positives = 197/229 (86%), Gaps = 1/229 (0%)
 Frame = +2

Query: 23  AYNTASKSCASPPKTTPFL-GFSMASKPSICLSKSNNKRCSQIKCSQEQATTTTLVPIEQ 199
           +Y+T + +  SP   +PF+ GFS +       S SN++R  +++C ++  +  T VP++Q
Sbjct: 19  SYSTKNGTSISP---SPFVVGFSFSQS---WFSLSNSRRGFEVRCEKKDKSVVTRVPLDQ 72

Query: 200 QWMFDDTQFKGPDIWNTTWYPKAADHINTEKKWYIVDATDKILGRLASTIAIHIRGKNLA 379
           +W+F++++  GPDIWNTTWYPKAADHINTEK WYIVDATDKILGRLASTIAI+IRGKNLA
Sbjct: 73  RWLFEESEINGPDIWNTTWYPKAADHINTEKTWYIVDATDKILGRLASTIAIYIRGKNLA 132

Query: 380 TYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYKRHSGRPGGMKVETFDQLQQRIPERILE 559
           TYTPSVDMGAFVIVVNAEKVAVSGKKR QKLY+RHSGRPGGM VETFDQLQQRIPERI+E
Sbjct: 133 TYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIE 192

Query: 560 HAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIKDKRIQVQK 706
           HAVRGMLPKGRLGRALFNHLKVY GP HPHEAQKP++LPI+DKRIQ+++
Sbjct: 193 HAVRGMLPKGRLGRALFNHLKVYTGPTHPHEAQKPIELPIRDKRIQMER 241


>emb|CBI20115.3| unnamed protein product [Vitis vinifera]
          Length = 374

 Score =  340 bits (873), Expect = 3e-91
 Identities = 168/224 (75%), Positives = 191/224 (85%), Gaps = 3/224 (1%)
 Frame = +2

Query: 44  SCASPPKTTPFLGFSMAS---KPSICLSKSNNKRCSQIKCSQEQATTTTLVPIEQQWMFD 214
           S  S  KTTPFLGFS+++   KPS        ++  ++ C  + A    +VP++Q+WMF+
Sbjct: 161 SFGSLKKTTPFLGFSISAANPKPSF------PRQSFRVNCQDKAA----VVPLDQRWMFE 210

Query: 215 DTQFKGPDIWNTTWYPKAADHINTEKKWYIVDATDKILGRLASTIAIHIRGKNLATYTPS 394
            ++  GPDIWN TWYPKAADHINTEK WYIVDATDKILGRLASTIAI+IRGKNLATYTPS
Sbjct: 211 QSEVSGPDIWNKTWYPKAADHINTEKTWYIVDATDKILGRLASTIAIYIRGKNLATYTPS 270

Query: 395 VDMGAFVIVVNAEKVAVSGKKRNQKLYKRHSGRPGGMKVETFDQLQQRIPERILEHAVRG 574
           VDMG+FVIVVNAEKVAVSGKKR QKLY+RHSGRPGGMKVETFDQLQQRIPERI+EHAVRG
Sbjct: 271 VDMGSFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMKVETFDQLQQRIPERIVEHAVRG 330

Query: 575 MLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIKDKRIQVQK 706
           MLPKGRLGRALFNHLKVYKGP HPHEAQKP+DLPI+DKRIQ ++
Sbjct: 331 MLPKGRLGRALFNHLKVYKGPHHPHEAQKPIDLPIRDKRIQKER 374


>ref|XP_002285616.1| PREDICTED: 50S ribosomal protein L13, chloroplastic [Vitis
           vinifera]
          Length = 235

 Score =  340 bits (873), Expect = 3e-91
 Identities = 168/224 (75%), Positives = 191/224 (85%), Gaps = 3/224 (1%)
 Frame = +2

Query: 44  SCASPPKTTPFLGFSMAS---KPSICLSKSNNKRCSQIKCSQEQATTTTLVPIEQQWMFD 214
           S  S  KTTPFLGFS+++   KPS        ++  ++ C  + A    +VP++Q+WMF+
Sbjct: 22  SFGSLKKTTPFLGFSISAANPKPSF------PRQSFRVNCQDKAA----VVPLDQRWMFE 71

Query: 215 DTQFKGPDIWNTTWYPKAADHINTEKKWYIVDATDKILGRLASTIAIHIRGKNLATYTPS 394
            ++  GPDIWN TWYPKAADHINTEK WYIVDATDKILGRLASTIAI+IRGKNLATYTPS
Sbjct: 72  QSEVSGPDIWNKTWYPKAADHINTEKTWYIVDATDKILGRLASTIAIYIRGKNLATYTPS 131

Query: 395 VDMGAFVIVVNAEKVAVSGKKRNQKLYKRHSGRPGGMKVETFDQLQQRIPERILEHAVRG 574
           VDMG+FVIVVNAEKVAVSGKKR QKLY+RHSGRPGGMKVETFDQLQQRIPERI+EHAVRG
Sbjct: 132 VDMGSFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMKVETFDQLQQRIPERIVEHAVRG 191

Query: 575 MLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIKDKRIQVQK 706
           MLPKGRLGRALFNHLKVYKGP HPHEAQKP+DLPI+DKRIQ ++
Sbjct: 192 MLPKGRLGRALFNHLKVYKGPHHPHEAQKPIDLPIRDKRIQKER 235