BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00001790
         (1380 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEK26572.1| cryptochrome 1.2 [Populus tremula]                     629   e-178
ref|NP_001234667.1| cryptochrome 1 [Solanum lycopersicum] gi|552...   627   e-177
gb|AAB28725.2| flavin-type blue-light photoreceptor [Arabidopsis...   626   e-177
pdb|1U3C|A Chain A, Crystal Structure Of The Phr Domain Of Crypt...   626   e-177
gb|AAB28724.1| flavin-type blue-light photoreceptor [Arabidopsis...   626   e-177

>gb|AEK26572.1| cryptochrome 1.2 [Populus tremula]
          Length = 681

 Score =  629 bits (1623), Expect = e-178
 Identities = 300/384 (78%), Positives = 327/384 (85%)
 Frame = +2

Query: 227  MSGGGCNIVWFRRDLRVEDNPALAAGVRAGTVIALYIWAPEEEGHYQPGRVSRWWXXXXX 406
            MSGGGC+IVWFRRDLRVEDNPALAAGVRAG V+A+++WAPEEEGHY PGRVSRWW     
Sbjct: 1    MSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVVAVFVWAPEEEGHYYPGRVSRWWLKQSL 60

Query: 407  XXXXXXXRTLGTTLVTKRSTDXXXXXXXXXXXXGATHLFFNHLYXXXXXXXXXXXXXDPL 586
                   R+LGT+LVTKRSTD            GAT LFFNHLY             DPL
Sbjct: 61   AHLDSSLRSLGTSLVTKRSTDSVSTLLEVIKSTGATQLFFNHLY-------------DPL 107

Query: 587  SLVRDHRAKEVLTAHGVTVRSFNADLLYEPWEVLDDIGRPFITFTDFWSKCLSMPYDPDS 766
            SLVRDHRAKEVLTA G+ VRSFNADLLYEPW+V D  GRPF TF  FW +CLSMP+DP++
Sbjct: 108  SLVRDHRAKEVLTAQGIAVRSFNADLLYEPWDVNDAQGRPFTTFATFWDRCLSMPFDPEA 167

Query: 767  PLLPPKRIISGDVSLCPSDPLVFEDESEKGSNALLARAWSPGWNSGDKALTTFINGPLAE 946
            PLLPPKRIISGD S CPS+ LVFEDESEKGSNALLARAWSPGW++ D+ALTTFINGPL E
Sbjct: 168  PLLPPKRIISGDASRCPSEMLVFEDESEKGSNALLARAWSPGWSNADRALTTFINGPLIE 227

Query: 947  YAKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRLKQVLWSNEGNQAGEESVNLFLKSI 1126
            Y+KNRRKADSATTSFLSPHLHFGEVSVRKVFHLVR+KQVLW+NEGN+AGEESVNLFLKSI
Sbjct: 228  YSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSI 287

Query: 1127 GLREYSRYISFNYPYSHEKPLLGRLKFFPWVIDEDQFKAWRQGRTGYPLVDAGMRELWAT 1306
            GLREYSRY+SFN+PYSHE+PLLG LKFFPWV+DE  FKAWRQGRTGYPLVDAGMRELWAT
Sbjct: 288  GLREYSRYLSFNHPYSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWAT 347

Query: 1307 GWLHDRIRVVVSSFFVKILQLPWR 1378
            GWLHDRIRVVV+SFFVK+LQLPWR
Sbjct: 348  GWLHDRIRVVVASFFVKVLQLPWR 371


>ref|NP_001234667.1| cryptochrome 1 [Solanum lycopersicum]
            gi|5524201|gb|AAD44161.1|AF130423_1 cryptochrome 1
            [Solanum lycopersicum]
            gi|8101442|gb|AAF72555.1|AF130424_1 cryptochrome 1
            [Solanum lycopersicum]
          Length = 679

 Score =  627 bits (1618), Expect = e-177
 Identities = 298/384 (77%), Positives = 328/384 (85%)
 Frame = +2

Query: 227  MSGGGCNIVWFRRDLRVEDNPALAAGVRAGTVIALYIWAPEEEGHYQPGRVSRWWXXXXX 406
            MSGGGC+IVWFRRDLRVEDNPALAAGVRAG VIA++I+APEEEGHY PGRVSRWW     
Sbjct: 1    MSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIYAPEEEGHYYPGRVSRWWLKQSL 60

Query: 407  XXXXXXXRTLGTTLVTKRSTDXXXXXXXXXXXXGATHLFFNHLYXXXXXXXXXXXXXDPL 586
                   ++LGT+L+TKRSTD            GAT LFFNHLY             DP+
Sbjct: 61   AHLDSSLKSLGTSLITKRSTDSISSLLEVVKSTGATQLFFNHLY-------------DPI 107

Query: 587  SLVRDHRAKEVLTAHGVTVRSFNADLLYEPWEVLDDIGRPFITFTDFWSKCLSMPYDPDS 766
            SLVRDHR KE+LTA G++VRSFNADLLYEPWEV DD GRPF TF+ FW KCLSMPYDP++
Sbjct: 108  SLVRDHRTKEILTAQGISVRSFNADLLYEPWEVNDDEGRPFTTFSAFWEKCLSMPYDPEA 167

Query: 767  PLLPPKRIISGDVSLCPSDPLVFEDESEKGSNALLARAWSPGWNSGDKALTTFINGPLAE 946
            PLLPPKRIISGD S CPSD LVFEDESEKGSNALLARAWSPGW++ DKALTTF+NGPL E
Sbjct: 168  PLLPPKRIISGDASRCPSDNLVFEDESEKGSNALLARAWSPGWSNADKALTTFVNGPLLE 227

Query: 947  YAKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRLKQVLWSNEGNQAGEESVNLFLKSI 1126
            Y++NRRKADSATTSFLSPHLHFGEVSVRKVFH VR+KQVLW+NEGN+AGEESVNLFLKSI
Sbjct: 228  YSQNRRKADSATTSFLSPHLHFGEVSVRKVFHFVRIKQVLWANEGNKAGEESVNLFLKSI 287

Query: 1127 GLREYSRYISFNYPYSHEKPLLGRLKFFPWVIDEDQFKAWRQGRTGYPLVDAGMRELWAT 1306
            GLREYSRY+SFN+PYSHE+PLLG L++FPWV+DE  FKAWRQGRTGYPLVDAGMRELWAT
Sbjct: 288  GLREYSRYMSFNHPYSHERPLLGHLRYFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWAT 347

Query: 1307 GWLHDRIRVVVSSFFVKILQLPWR 1378
            GWLHDRIRVVVSSFFVK+LQLPWR
Sbjct: 348  GWLHDRIRVVVSSFFVKVLQLPWR 371


>gb|AAB28725.2| flavin-type blue-light photoreceptor [Arabidopsis thaliana]
          Length = 556

 Score =  626 bits (1614), Expect = e-177
 Identities = 297/381 (77%), Positives = 324/381 (85%)
 Frame = +2

Query: 236  GGCNIVWFRRDLRVEDNPALAAGVRAGTVIALYIWAPEEEGHYQPGRVSRWWXXXXXXXX 415
            GGC+IVWFRRDLRVEDNPALAA VRAG VIAL++WAPEEEGHY PGRVSRWW        
Sbjct: 11   GGCSIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQL 70

Query: 416  XXXXRTLGTTLVTKRSTDXXXXXXXXXXXXGATHLFFNHLYXXXXXXXXXXXXXDPLSLV 595
                R+LGT L+TKRSTD            GA+ +FFNHLY             DPLSLV
Sbjct: 71   DSSLRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLY-------------DPLSLV 117

Query: 596  RDHRAKEVLTAHGVTVRSFNADLLYEPWEVLDDIGRPFITFTDFWSKCLSMPYDPDSPLL 775
            RDHRAK+VLTA G+ VRSFNADLLYEPWEV D++GRPF  F  FW +CLSMPYDP+SPLL
Sbjct: 118  RDHRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLL 177

Query: 776  PPKRIISGDVSLCPSDPLVFEDESEKGSNALLARAWSPGWNSGDKALTTFINGPLAEYAK 955
            PPK+IISGDVS C +DPLVFED+SEKGSNALLARAWSPGW++GDKALTTFINGPL EY+K
Sbjct: 178  PPKKIISGDVSKCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSK 237

Query: 956  NRRKADSATTSFLSPHLHFGEVSVRKVFHLVRLKQVLWSNEGNQAGEESVNLFLKSIGLR 1135
            NRRKADSATTSFLSPHLHFGEVSVRKVFHLVR+KQV W+NEGN+AGEESVNLFLKSIGLR
Sbjct: 238  NRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLR 297

Query: 1136 EYSRYISFNYPYSHEKPLLGRLKFFPWVIDEDQFKAWRQGRTGYPLVDAGMRELWATGWL 1315
            EYSRYISFN+PYSHE+PLLG LKFFPW +DE+ FKAWRQGRTGYPLVDAGMRELWATGWL
Sbjct: 298  EYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 357

Query: 1316 HDRIRVVVSSFFVKILQLPWR 1378
            HDRIRVVVSSFFVK+LQLPWR
Sbjct: 358  HDRIRVVVSSFFVKVLQLPWR 378


>pdb|1U3C|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From
            Arabidopsis Thaliana gi|52695978|pdb|1U3D|A Chain A,
            Crystal Structure Of The Phr Domain Of Cryptochrome 1
            From Arabidopsis Thaliana With Amppnp Bound
          Length = 509

 Score =  626 bits (1614), Expect = e-177
 Identities = 297/381 (77%), Positives = 324/381 (85%)
 Frame = +2

Query: 236  GGCNIVWFRRDLRVEDNPALAAGVRAGTVIALYIWAPEEEGHYQPGRVSRWWXXXXXXXX 415
            GGC+IVWFRRDLRVEDNPALAA VRAG VIAL++WAPEEEGHY PGRVSRWW        
Sbjct: 11   GGCSIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQL 70

Query: 416  XXXXRTLGTTLVTKRSTDXXXXXXXXXXXXGATHLFFNHLYXXXXXXXXXXXXXDPLSLV 595
                R+LGT L+TKRSTD            GA+ +FFNHLY             DPLSLV
Sbjct: 71   DSSLRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLY-------------DPLSLV 117

Query: 596  RDHRAKEVLTAHGVTVRSFNADLLYEPWEVLDDIGRPFITFTDFWSKCLSMPYDPDSPLL 775
            RDHRAK+VLTA G+ VRSFNADLLYEPWEV D++GRPF  F  FW +CLSMPYDP+SPLL
Sbjct: 118  RDHRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLL 177

Query: 776  PPKRIISGDVSLCPSDPLVFEDESEKGSNALLARAWSPGWNSGDKALTTFINGPLAEYAK 955
            PPK+IISGDVS C +DPLVFED+SEKGSNALLARAWSPGW++GDKALTTFINGPL EY+K
Sbjct: 178  PPKKIISGDVSKCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSK 237

Query: 956  NRRKADSATTSFLSPHLHFGEVSVRKVFHLVRLKQVLWSNEGNQAGEESVNLFLKSIGLR 1135
            NRRKADSATTSFLSPHLHFGEVSVRKVFHLVR+KQV W+NEGN+AGEESVNLFLKSIGLR
Sbjct: 238  NRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLR 297

Query: 1136 EYSRYISFNYPYSHEKPLLGRLKFFPWVIDEDQFKAWRQGRTGYPLVDAGMRELWATGWL 1315
            EYSRYISFN+PYSHE+PLLG LKFFPW +DE+ FKAWRQGRTGYPLVDAGMRELWATGWL
Sbjct: 298  EYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 357

Query: 1316 HDRIRVVVSSFFVKILQLPWR 1378
            HDRIRVVVSSFFVK+LQLPWR
Sbjct: 358  HDRIRVVVSSFFVKVLQLPWR 378


>gb|AAB28724.1| flavin-type blue-light photoreceptor [Arabidopsis thaliana]
          Length = 681

 Score =  626 bits (1614), Expect = e-177
 Identities = 297/381 (77%), Positives = 324/381 (85%)
 Frame = +2

Query: 236  GGCNIVWFRRDLRVEDNPALAAGVRAGTVIALYIWAPEEEGHYQPGRVSRWWXXXXXXXX 415
            GGC+IVWFRRDLRVEDNPALAA VRAG VIAL++WAPEEEGHY PGRVSRWW        
Sbjct: 11   GGCSIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQL 70

Query: 416  XXXXRTLGTTLVTKRSTDXXXXXXXXXXXXGATHLFFNHLYXXXXXXXXXXXXXDPLSLV 595
                R+LGT L+TKRSTD            GA+ +FFNHLY             DPLSLV
Sbjct: 71   DSSLRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLY-------------DPLSLV 117

Query: 596  RDHRAKEVLTAHGVTVRSFNADLLYEPWEVLDDIGRPFITFTDFWSKCLSMPYDPDSPLL 775
            RDHRAK+VLTA G+ VRSFNADLLYEPWEV D++GRPF  F  FW +CLSMPYDP+SPLL
Sbjct: 118  RDHRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLL 177

Query: 776  PPKRIISGDVSLCPSDPLVFEDESEKGSNALLARAWSPGWNSGDKALTTFINGPLAEYAK 955
            PPK+IISGDVS C +DPLVFED+SEKGSNALLARAWSPGW++GDKALTTFINGPL EY+K
Sbjct: 178  PPKKIISGDVSKCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSK 237

Query: 956  NRRKADSATTSFLSPHLHFGEVSVRKVFHLVRLKQVLWSNEGNQAGEESVNLFLKSIGLR 1135
            NRRKADSATTSFLSPHLHFGEVSVRKVFHLVR+KQV W+NEGN+AGEESVNLFLKSIGLR
Sbjct: 238  NRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLR 297

Query: 1136 EYSRYISFNYPYSHEKPLLGRLKFFPWVIDEDQFKAWRQGRTGYPLVDAGMRELWATGWL 1315
            EYSRYISFN+PYSHE+PLLG LKFFPW +DE+ FKAWRQGRTGYPLVDAGMRELWATGWL
Sbjct: 298  EYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 357

Query: 1316 HDRIRVVVSSFFVKILQLPWR 1378
            HDRIRVVVSSFFVK+LQLPWR
Sbjct: 358  HDRIRVVVSSFFVKVLQLPWR 378