BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00001552
         (1097 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002512800.1| DNA cross-link repair protein pso2/snm1, put...   457   e-126
ref|XP_003548485.1| PREDICTED: DNA cross-link repair protein SNM...   456   e-126
ref|XP_003624539.1| DNA cross-link repair protein SNM1 [Medicago...   449   e-124
ref|XP_002875331.1| hypothetical protein ARALYDRAFT_484438 [Arab...   442   e-122
ref|NP_189302.1| DNA cross-link repair protein SNM1 [Arabidopsis...   442   e-122

>ref|XP_002512800.1| DNA cross-link repair protein pso2/snm1, putative [Ricinus communis]
            gi|223547811|gb|EEF49303.1| DNA cross-link repair protein
            pso2/snm1, putative [Ricinus communis]
          Length = 493

 Score =  457 bits (1175), Expect = e-126
 Identities = 223/366 (60%), Positives = 270/366 (73%), Gaps = 6/366 (1%)
 Frame = -2

Query: 1081 DSFAADFYRCGTDWSSCIIXXXXXXXXXXXXKLTQSNLFQMWKLPYNCNGGDVDDASTSL 902
            +SFAADFYRCG+DWSS ++            KL Q+NL  +W L  N         ++S 
Sbjct: 61   ESFAADFYRCGSDWSSLLLDRGDTNNNNIEKKLKQANLLDVWGLKNNNPKPKALPLTSSS 120

Query: 901  VVPXXXXXXXXXXXXXXKAXXXXXQ------RDCPFYKKIPGTPFTVDAFRYGQVRGCSA 740
              P              K             R CPFYKKIPGTPFTVDAFRYG ++ CSA
Sbjct: 121  PSPFKKLKIGSSSSSSIKPNYKNLIPKSIKPRVCPFYKKIPGTPFTVDAFRYGPIQNCSA 180

Query: 739  YFLSHFHADHYVGLSKAWSHGPIYCTPITARLIKMCLYVNPSIIHTLDLDVEYVIEGIKV 560
            YFL+HFHADHY GL+K WSHGPIYCT +TARL+K+CLYVN S IH LDL+ EY IEG++V
Sbjct: 181  YFLTHFHADHYGGLTKGWSHGPIYCTQLTARLLKLCLYVNSSFIHPLDLNTEYAIEGVRV 240

Query: 559  TLLEANHCPGAALIHFHLPGGQCYLHTGDFRASKLMQTYPLFLKQRVNVLYLDTTYCNPK 380
            TLLEANHCPGAAL+HF L  G CYLHTGDFRASK+MQ+Y L + Q+VN LYLDTTYCNPK
Sbjct: 241  TLLEANHCPGAALLHFRLSNGLCYLHTGDFRASKVMQSYHLLVNQKVNALYLDTTYCNPK 300

Query: 379  YRFPLKEEVLNFVVKVTKNTLRKQPKTLIIVGAYSIGKESVFLAISKELEVKIHANSSRR 200
            Y+FP KE+VLN+VV+VTK+ L++QP+TLI+VGAYSIGKE V+L+ISK L VKI+A++SRR
Sbjct: 301  YKFPSKEDVLNYVVRVTKDFLKQQPETLIVVGAYSIGKECVYLSISKALGVKIYASASRR 360

Query: 199  RILQSFGWPEISGSLCTNGNDTPLHVLPMSSLKFEVLEKYLKTYSGRYTSVLAFRPTGWT 20
            +IL+SFGW ++S SLCT   DTPLHVLP+SSL+ E L+ YLK Y  +Y +VLAFRPTGWT
Sbjct: 361  QILESFGWSDLSRSLCTQPKDTPLHVLPISSLRVETLKDYLKKYINQYRAVLAFRPTGWT 420

Query: 19   FSEATG 2
            +SE  G
Sbjct: 421  YSENVG 426


>ref|XP_003548485.1| PREDICTED: DNA cross-link repair protein SNM1-like [Glycine max]
          Length = 505

 Score =  456 bits (1172), Expect = e-126
 Identities = 232/385 (60%), Positives = 271/385 (70%), Gaps = 29/385 (7%)
 Frame = -2

Query: 1078 SFAADFYRCGTDWSSCIIXXXXXXXXXXXXK----LTQSNLFQMWKLPYNCNGGDV---- 923
            SFAADFYR GTDWSS ++                 + Q+NLFQ+W    N   G V    
Sbjct: 51   SFAADFYRSGTDWSSLLLSLEDSKQSDLAQDSGKKMKQANLFQIWGFKRNDAIGSVESGP 110

Query: 922  ------DDASTS----LVVPXXXXXXXXXXXXXXK-----------AXXXXXQRDCPFYK 806
                  DD   S    +V P              +                  R CPFYK
Sbjct: 111  SKSGCCDDGGGSSERKIVKPENRCSIFPDTGKEFENAKSSRKRKGSCGENRVTRSCPFYK 170

Query: 805  KIPGTPFTVDAFRYGQVRGCSAYFLSHFHADHYVGLSKAWSHGPIYCTPITARLIKMCLY 626
            K+PGT FTVDAFRYG V GCSAYFL+HFH DHY GLSK WSHGPIYC+P+T RL++MCL 
Sbjct: 171  KMPGTMFTVDAFRYGCVEGCSAYFLTHFHCDHYGGLSKKWSHGPIYCSPLTGRLVQMCLS 230

Query: 625  VNPSIIHTLDLDVEYVIEGIKVTLLEANHCPGAALIHFHLPGGQCYLHTGDFRASKLMQT 446
            VNP  IH L+ + E+VI+G+KVTLLEANHCPGAALIHF+LP GQ YLHTGDFRA KLMQ 
Sbjct: 231  VNPLYIHPLEFNEEHVIDGVKVTLLEANHCPGAALIHFNLPNGQRYLHTGDFRACKLMQA 290

Query: 445  YPLFLKQRVNVLYLDTTYCNPKYRFPLKEEVLNFVVKVTKNTLRKQPKTLIIVGAYSIGK 266
            Y L + QRVNVLYLDTTYCNPKYRFP KEEVLN+VVK+TKN L+  P+TL++VGAYSIGK
Sbjct: 291  YHLLVNQRVNVLYLDTTYCNPKYRFPSKEEVLNYVVKITKNHLKIHPRTLVVVGAYSIGK 350

Query: 265  ESVFLAISKELEVKIHANSSRRRILQSFGWPEISGSLCTNGNDTPLHVLPMSSLKFEVLE 86
            E V+LAISK L VKI+AN+SRRRILQ+FGWP++S  LCTNGN+T LHVLPMSSL+ E L+
Sbjct: 351  ECVYLAISKALGVKIYANASRRRILQAFGWPDLSDKLCTNGNNTLLHVLPMSSLRVETLK 410

Query: 85   KYLKTYSGRYTSVLAFRPTGWTFSE 11
             YLKTY  ++T++LAFRPTGWTFSE
Sbjct: 411  DYLKTYKEQFTAILAFRPTGWTFSE 435


>ref|XP_003624539.1| DNA cross-link repair protein SNM1 [Medicago truncatula]
            gi|87241310|gb|ABD33168.1| DNA repair
            metallo-beta-lactamase [Medicago truncatula]
            gi|355499554|gb|AES80757.1| DNA cross-link repair protein
            SNM1 [Medicago truncatula]
          Length = 511

 Score =  449 bits (1156), Expect = e-124
 Identities = 229/383 (59%), Positives = 264/383 (68%), Gaps = 24/383 (6%)
 Frame = -2

Query: 1078 SFAADFYRCGTDWSSCIIXXXXXXXXXXXXKLTQSNLFQMWKLPYNCN------GGDVDD 917
            SFAADFYRCG+D SS +              L Q+NLFQ+W    N        GG  D 
Sbjct: 64   SFAADFYRCGSDCSSLLTPERDSLSSGKK--LKQANLFQIWGFKRNVEFESPNQGGYCDV 121

Query: 916  ASTSLV------------------VPXXXXXXXXXXXXXXKAXXXXXQRDCPFYKKIPGT 791
                 V                                          R CPFYKK+PGT
Sbjct: 122  VGEGSVSSEKKSVKRGNWGSILRDTGKVVENSKSTGKRKSFHGEKRVTRSCPFYKKMPGT 181

Query: 790  PFTVDAFRYGQVRGCSAYFLSHFHADHYVGLSKAWSHGPIYCTPITARLIKMCLYVNPSI 611
             FTVDAFRYG V  CSAYFLSHFHADHY GLSK WSHGPIYC+P+T RL++MCLYVNPS 
Sbjct: 182  NFTVDAFRYGCVEECSAYFLSHFHADHYGGLSKKWSHGPIYCSPLTGRLVQMCLYVNPSY 241

Query: 610  IHTLDLDVEYVIEGIKVTLLEANHCPGAALIHFHLPGGQCYLHTGDFRASKLMQTYPLFL 431
            I  L+ D EYVI+GIKVTL++ANHCPGAALIHF LP GQCYLHTGDFRA KLMQ Y LF+
Sbjct: 242  ICPLEFDTEYVIDGIKVTLIDANHCPGAALIHFELPNGQCYLHTGDFRACKLMQDYHLFV 301

Query: 430  KQRVNVLYLDTTYCNPKYRFPLKEEVLNFVVKVTKNTLRKQPKTLIIVGAYSIGKESVFL 251
             +RVNVLYLDTTYCNPKY+FP K++VLN+VVK+T N L+K P+TL++VGAYSIGKE V+L
Sbjct: 302  NKRVNVLYLDTTYCNPKYKFPSKDDVLNYVVKITNNHLKKYPRTLVVVGAYSIGKECVYL 361

Query: 250  AISKELEVKIHANSSRRRILQSFGWPEISGSLCTNGNDTPLHVLPMSSLKFEVLEKYLKT 71
            AISK L VKIH N+SRRRIL ++  P+ S  LCTNGN+T LHVLPMSSL+ E L++YLKT
Sbjct: 362  AISKALGVKIHVNASRRRILLAYDCPDYSDRLCTNGNNTLLHVLPMSSLRIETLKEYLKT 421

Query: 70   YSGRYTSVLAFRPTGWTFSEATG 2
            Y  ++TSVLAFRPTGWTFSE  G
Sbjct: 422  YKEQFTSVLAFRPTGWTFSEKIG 444


>ref|XP_002875331.1| hypothetical protein ARALYDRAFT_484438 [Arabidopsis lyrata subsp.
            lyrata] gi|297321169|gb|EFH51590.1| hypothetical protein
            ARALYDRAFT_484438 [Arabidopsis lyrata subsp. lyrata]
          Length = 483

 Score =  442 bits (1138), Expect = e-122
 Identities = 222/376 (59%), Positives = 270/376 (71%), Gaps = 16/376 (4%)
 Frame = -2

Query: 1081 DSFAADFYRCGTDWSSCIIXXXXXXXXXXXXKLTQSNLFQMWKLPYNCNGGDVDDASTSL 902
            + FA+DFY+ G+DWS  +             K+ Q+NLFQ+W L  N          T L
Sbjct: 41   EGFASDFYKAGSDWSCLVEDEETVCSSEKNKKMKQANLFQIWGLQENSPDTTKKMKQTDL 100

Query: 901  VV------PXXXXXXXXXXXXXXKAXXXXXQRD----------CPFYKKIPGTPFTVDAF 770
                    P               +     +RD          CPFYKK+PGTPFTVDAF
Sbjct: 101  FQSWGLQKPSPFTSPASNSSKKTTSALGKRRRDSSFGNDSPRPCPFYKKLPGTPFTVDAF 160

Query: 769  RYGQVRGCSAYFLSHFHADHYVGLSKAWSHGPIYCTPITARLIKMCLYVNPSIIHTLDLD 590
            RYG V+GCSAYFL+HFHADHY+GL+KAWSHGPIYC+ +T+RL+++ L V+PS IH L+LD
Sbjct: 161  RYGCVQGCSAYFLTHFHADHYIGLTKAWSHGPIYCSSLTSRLLRLSLSVDPSFIHPLELD 220

Query: 589  VEYVIEGIKVTLLEANHCPGAALIHFHLPGGQCYLHTGDFRASKLMQTYPLFLKQRVNVL 410
            VEY I GIKVTL+EANHCPGAALIHF L  G CYLHTGDFRASK MQT+PL   QRV+VL
Sbjct: 221  VEYTINGIKVTLIEANHCPGAALIHFRLLDGTCYLHTGDFRASKKMQTHPLLFNQRVHVL 280

Query: 409  YLDTTYCNPKYRFPLKEEVLNFVVKVTKNTLRKQPKTLIIVGAYSIGKESVFLAISKELE 230
            YLDTTYCNP+Y+FP KE+VL++VV++TK+ LRKQPKTLI+VG+YSIGKE V+LAI+K L 
Sbjct: 281  YLDTTYCNPRYKFPSKEDVLSYVVRITKDFLRKQPKTLIVVGSYSIGKECVYLAIAKALG 340

Query: 229  VKIHANSSRRRILQSFGWPEISGSLCTNGNDTPLHVLPMSSLKFEVLEKYLKTYSGRYTS 50
            VKI AN+SRRRILQSFGW +IS +L T+G  T LHVLPMSSLK E L+++LK Y  +Y +
Sbjct: 341  VKIFANASRRRILQSFGWDDISKNLSTDGKATCLHVLPMSSLKVERLDEHLKVYREQYGA 400

Query: 49   VLAFRPTGWTFSEATG 2
            VLAFRPTGWT+SE  G
Sbjct: 401  VLAFRPTGWTYSEKIG 416


>ref|NP_189302.1| DNA cross-link repair protein SNM1 [Arabidopsis thaliana]
            gi|30688447|ref|NP_850635.1| DNA cross-link repair
            protein SNM1 [Arabidopsis thaliana]
            gi|79313637|ref|NP_001030773.1| DNA cross-link repair
            protein SNM1 [Arabidopsis thaliana]
            gi|73621911|sp|Q38961.1|SNM1_ARATH RecName: Full=DNA
            cross-link repair protein SNM1; Short=AtSNM1
            gi|1402886|emb|CAA66817.1| hypothetical protein
            [Arabidopsis thaliana] gi|11994302|dbj|BAB01732.1|
            unnamed protein product [Arabidopsis thaliana]
            gi|26449933|dbj|BAC42087.1| unknown protein [Arabidopsis
            thaliana] gi|28827378|gb|AAO50533.1| unknown protein
            [Arabidopsis thaliana] gi|332643675|gb|AEE77196.1| DNA
            cross-link repair protein SNM1 [Arabidopsis thaliana]
            gi|332643676|gb|AEE77197.1| DNA cross-link repair protein
            SNM1 [Arabidopsis thaliana] gi|332643677|gb|AEE77198.1|
            DNA cross-link repair protein SNM1 [Arabidopsis thaliana]
          Length = 484

 Score =  442 bits (1136), Expect = e-122
 Identities = 224/376 (59%), Positives = 271/376 (72%), Gaps = 16/376 (4%)
 Frame = -2

Query: 1081 DSFAADFYRCGTDWSSCIIXXXXXXXXXXXXKLTQSNLFQMWKLPYNCNGGDVDDASTSL 902
            + FA+DFY+ G+DWS C++             + QSNLFQ+W L  N          T L
Sbjct: 44   EGFASDFYKAGSDWS-CLVEDEETVSSSVKK-MKQSNLFQIWGLQENSPDTTKKMKQTDL 101

Query: 901  VV------PXXXXXXXXXXXXXXKAXXXXXQRD----------CPFYKKIPGTPFTVDAF 770
                    P               +     +RD          CPFYKK+PGTPFTVDAF
Sbjct: 102  FQSWGLQKPSPFTSPASNSAKKTTSALGKRRRDSSFSNDSPRPCPFYKKLPGTPFTVDAF 161

Query: 769  RYGQVRGCSAYFLSHFHADHYVGLSKAWSHGPIYCTPITARLIKMCLYVNPSIIHTLDLD 590
            RYG V+GCSAYFL+HFHADHY+GL+KAWSHGPIYC+ +T+RL+++ L VNPS IH L+LD
Sbjct: 162  RYGCVQGCSAYFLTHFHADHYIGLTKAWSHGPIYCSSLTSRLLRLSLSVNPSSIHPLELD 221

Query: 589  VEYVIEGIKVTLLEANHCPGAALIHFHLPGGQCYLHTGDFRASKLMQTYPLFLKQRVNVL 410
            VEY I GIKVTL+EANHCPGAALIHF L  G CYLHTGDFRASK MQT+PL   QRV+VL
Sbjct: 222  VEYTINGIKVTLIEANHCPGAALIHFRLLDGTCYLHTGDFRASKQMQTHPLLFNQRVHVL 281

Query: 409  YLDTTYCNPKYRFPLKEEVLNFVVKVTKNTLRKQPKTLIIVGAYSIGKESVFLAISKELE 230
            YLDTTYCNP+Y+FP KE+VL++VV++TK+ LRKQPKTLI+VG+YSIGKE V+LAI+K L 
Sbjct: 282  YLDTTYCNPRYKFPSKEDVLSYVVRITKDFLRKQPKTLIVVGSYSIGKECVYLAIAKALG 341

Query: 229  VKIHANSSRRRILQSFGWPEISGSLCTNGNDTPLHVLPMSSLKFEVLEKYLKTYSGRYTS 50
            VKI AN+SRRRILQSFGW +IS +L T+G  T LHVLPMSSLK E L+++LK Y  +Y +
Sbjct: 342  VKIFANASRRRILQSFGWDDISKNLSTDGKATCLHVLPMSSLKVERLDEHLKIYREQYGA 401

Query: 49   VLAFRPTGWTFSEATG 2
            VLAFRPTGWT+SE  G
Sbjct: 402  VLAFRPTGWTYSEKIG 417