BLASTX nr result
ID: Bupleurum21_contig00001546
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00001546
(1698 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002511579.1| Glycyl-tRNA synthetase 2, chloroplast/mitoch... 224 5e-56
emb|CAB41128.1| aminoacyl-t-RNA synthetase [Arabidopsis thaliana] 203 1e-49
ref|NP_190394.3| glycyl-tRNA synthetase 2 [Arabidopsis thaliana]... 203 1e-49
emb|CAA05843.1| aminoacyl-t-RNA synthetase [Arabidopsis thaliana] 202 2e-49
ref|XP_002875878.1| aminoacyl-t-RNA synthetase [Arabidopsis lyra... 194 5e-47
>ref|XP_002511579.1| Glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor,
putative [Ricinus communis] gi|223548759|gb|EEF50248.1|
Glycyl-tRNA synthetase 2, chloroplast/mitochondrial
precursor, putative [Ricinus communis]
Length = 1069
Score = 224 bits (571), Expect = 5e-56
Identities = 150/346 (43%), Positives = 185/346 (53%), Gaps = 21/346 (6%)
Frame = +2
Query: 560 SRPIRWILALHGDVVIPFTIAGLISENIWHGL*NTPSATAK------------------- 682
SRPIRWI+ALHGD+V+PF AG++S NI +GL NTPSAT +
Sbjct: 539 SRPIRWIMALHGDLVVPFIYAGVLSGNISYGLRNTPSATVEVENAESYASIMRNAGIHIE 598
Query: 683 --QRKKTILELFNALAKEVDGQIVMQSSLLDEVVNLVEAPIPVLGKFKESFLELPKELLI 856
+RK++ILE NALAK V+G I++Q +LL+EVVNLVEAP PVLGKFKESFLELPK+LL
Sbjct: 599 IEERKRSILEHSNALAKSVNGHIIIQENLLNEVVNLVEAPFPVLGKFKESFLELPKDLLT 658
Query: 857 M*CIWQYSMFRIGGFMGRYLECTEYATTKTQSNQLAEEGHLSAHILPFSLSLLMLIWIPR 1036
M F + G+ L + + +G+
Sbjct: 659 MVMQKHQKYFAVTDETGKLLPYFIAVANGAINEMVVRKGN-------------------- 698
Query: 1037 MHIQPWLYLKDQLQMEQSIKK*CKKAMKLCSELDTKMLSSSMSWTLVKDSEFGDQLRGIL 1216
+++ + + K E+DT+ K SEF QL+GIL
Sbjct: 699 ----------------EAVLRARYEDAKFFYEMDTRK----------KFSEFRSQLKGIL 732
Query: 1217 FHEKLGTMLDKMIRIQGTVTDLRMVLGIDENKLKSVQDAASLAMSDLATAVVTEFTSLSG 1396
FHEKLGTMLDKM RI+ VT L +LGI E+ L++VQDAASLAMSDLATAVVTEFTSLSG
Sbjct: 733 FHEKLGTMLDKMTRIENMVTKLSALLGIREDLLQTVQDAASLAMSDLATAVVTEFTSLSG 792
Query: 1397 IMARXXXXXXXXXXXXXXXXXXXXXXXXXXIMARHYALRDGYSHQV 1534
IMARHYALRDGYS QV
Sbjct: 793 ------------------------------IMARHYALRDGYSEQV 808
>emb|CAB41128.1| aminoacyl-t-RNA synthetase [Arabidopsis thaliana]
Length = 1067
Score = 203 bits (516), Expect = 1e-49
Identities = 141/360 (39%), Positives = 188/360 (52%), Gaps = 21/360 (5%)
Frame = +2
Query: 518 ESAQWSTE*ASGRISRPIRWILALHGDVVIPFTIAGLISENIWHGL*NTPSATA------ 679
+S +W++ S SRPIRW++ALHGD+V+PF+ AG+ S N+ GL NT SA+
Sbjct: 526 KSMRWNS---SVMFSRPIRWVMALHGDLVVPFSFAGISSGNVSCGLRNTASASLLVQNAE 582
Query: 680 ---------------KQRKKTILELFNALAKEVDGQIVMQSSLLDEVVNLVEAPIPVLGK 814
++RKK ILE NALAK V G++V+ +LL+EV NLVEAP+P++GK
Sbjct: 583 SYEDTMRNSGINIEIEERKKIILEKSNALAKSVSGRLVVPQNLLNEVANLVEAPVPLIGK 642
Query: 815 FKESFLELPKELLIM*CIWQYSMFRIGGFMGRYLECTEYATTKTQSNQLAEEGHLSAHIL 994
FKESFLELP+ELL + F I G+ L + + ++G+
Sbjct: 643 FKESFLELPEELLTIVMQKHQKYFSIIDESGQLLPYFIAVANGAINEDVVKKGN------ 696
Query: 995 PFSLSLLMLIWIPRMHIQPWLYLKDQLQMEQSIKK*CKKAMKLCSELDTKMLSSSMSWTL 1174
+++ + + K E+DT+
Sbjct: 697 ------------------------------EAVLRARYEDAKFFYEVDTRK--------- 717
Query: 1175 VKDSEFGDQLRGILFHEKLGTMLDKMIRIQGTVTDLRMVLGIDENKLKSVQDAASLAMSD 1354
+ SEF DQL+GILFHEKLGTMLDKM R++ V+ L + L IDE+ L V+DAASLAMSD
Sbjct: 718 -RFSEFRDQLQGILFHEKLGTMLDKMNRLKKMVSKLCLALKIDEDLLPVVEDAASLAMSD 776
Query: 1355 LATAVVTEFTSLSGIMARXXXXXXXXXXXXXXXXXXXXXXXXXXIMARHYALRDGYSHQV 1534
LATAVVTEFT+LSG IMARHYALRDGYS Q+
Sbjct: 777 LATAVVTEFTALSG------------------------------IMARHYALRDGYSEQI 806
>ref|NP_190394.3| glycyl-tRNA synthetase 2 [Arabidopsis thaliana]
gi|75154114|sp|Q8L785.1|SYGM2_ARATH RecName:
Full=Glycine--tRNA ligase 2, chloroplastic/mitochondrial;
AltName: Full=Glycyl-tRNA synthetase 2; Short=GlyRS 2;
Flags: Precursor gi|22531150|gb|AAM97079.1| glycine--tRNA
ligase precursor, chloroplast (edd1) [Arabidopsis
thaliana] gi|45773748|gb|AAS76678.1| At3g48110
[Arabidopsis thaliana] gi|332644848|gb|AEE78369.1|
glycyl-tRNA synthetase 2 [Arabidopsis thaliana]
Length = 1067
Score = 203 bits (516), Expect = 1e-49
Identities = 141/360 (39%), Positives = 188/360 (52%), Gaps = 21/360 (5%)
Frame = +2
Query: 518 ESAQWSTE*ASGRISRPIRWILALHGDVVIPFTIAGLISENIWHGL*NTPSATA------ 679
+S +W++ S SRPIRW++ALHGD+V+PF+ AG+ S N+ GL NT SA+
Sbjct: 526 KSMRWNS---SVMFSRPIRWVMALHGDLVVPFSFAGISSGNVSCGLRNTASASLLVQNAE 582
Query: 680 ---------------KQRKKTILELFNALAKEVDGQIVMQSSLLDEVVNLVEAPIPVLGK 814
++RKK ILE NALAK V G++V+ +LL+EV NLVEAP+P++GK
Sbjct: 583 SYEDTMRNSGINIEIEERKKIILEKSNALAKSVSGRLVVPQNLLNEVANLVEAPVPLIGK 642
Query: 815 FKESFLELPKELLIM*CIWQYSMFRIGGFMGRYLECTEYATTKTQSNQLAEEGHLSAHIL 994
FKESFLELP+ELL + F I G+ L + + ++G+
Sbjct: 643 FKESFLELPEELLTIVMQKHQKYFSIIDESGQLLPYFIAVANGAINEDVVKKGN------ 696
Query: 995 PFSLSLLMLIWIPRMHIQPWLYLKDQLQMEQSIKK*CKKAMKLCSELDTKMLSSSMSWTL 1174
+++ + + K E+DT+
Sbjct: 697 ------------------------------EAVLRARYEDAKFFYEVDTRK--------- 717
Query: 1175 VKDSEFGDQLRGILFHEKLGTMLDKMIRIQGTVTDLRMVLGIDENKLKSVQDAASLAMSD 1354
+ SEF DQL+GILFHEKLGTMLDKM R++ V+ L + L IDE+ L V+DAASLAMSD
Sbjct: 718 -RFSEFRDQLQGILFHEKLGTMLDKMNRLKKMVSKLCLALKIDEDLLPVVEDAASLAMSD 776
Query: 1355 LATAVVTEFTSLSGIMARXXXXXXXXXXXXXXXXXXXXXXXXXXIMARHYALRDGYSHQV 1534
LATAVVTEFT+LSG IMARHYALRDGYS Q+
Sbjct: 777 LATAVVTEFTALSG------------------------------IMARHYALRDGYSEQI 806
>emb|CAA05843.1| aminoacyl-t-RNA synthetase [Arabidopsis thaliana]
Length = 1067
Score = 202 bits (515), Expect = 2e-49
Identities = 141/360 (39%), Positives = 189/360 (52%), Gaps = 21/360 (5%)
Frame = +2
Query: 518 ESAQWSTE*ASGRISRPIRWILALHGDVVIPFTIAGLISENIWHGL*NTPSATA------ 679
+S +W++ S SRPIRW++ALHGD+V+PF+ AG+ S N+ GL NT SA+
Sbjct: 526 KSMRWNS---SVIFSRPIRWVMALHGDLVVPFSFAGISSGNVSCGLRNTASASLLVQNAE 582
Query: 680 ---------------KQRKKTILELFNALAKEVDGQIVMQSSLLDEVVNLVEAPIPVLGK 814
++RKK ILE NALAK V+G++V+ +LL+EV NLVEAP+P++GK
Sbjct: 583 SYEDTMRNSGINIEIEERKKIILEKSNALAKSVNGRLVVPQNLLNEVANLVEAPVPLIGK 642
Query: 815 FKESFLELPKELLIM*CIWQYSMFRIGGFMGRYLECTEYATTKTQSNQLAEEGHLSAHIL 994
FKESFLELP+ELL + F I G+ L + + ++G+
Sbjct: 643 FKESFLELPEELLTIVMQKHQKYFSIIDESGQLLPYFIAVANGAINEDVVKKGN------ 696
Query: 995 PFSLSLLMLIWIPRMHIQPWLYLKDQLQMEQSIKK*CKKAMKLCSELDTKMLSSSMSWTL 1174
+++ + + K E+DT+
Sbjct: 697 ------------------------------EAVLRARYEDAKFFYEVDTRK--------- 717
Query: 1175 VKDSEFGDQLRGILFHEKLGTMLDKMIRIQGTVTDLRMVLGIDENKLKSVQDAASLAMSD 1354
+ SEF DQL+GILFHEKLGTMLDKM R++ V+ L + L IDE+ L V+DAASLAMSD
Sbjct: 718 -RFSEFRDQLQGILFHEKLGTMLDKMNRLKKMVSKLCLALKIDEDLLPVVEDAASLAMSD 776
Query: 1355 LATAVVTEFTSLSGIMARXXXXXXXXXXXXXXXXXXXXXXXXXXIMARHYALRDGYSHQV 1534
LATAVVTEFT+LSG IMARHYALRDGYS Q+
Sbjct: 777 LATAVVTEFTALSG------------------------------IMARHYALRDGYSEQI 806
>ref|XP_002875878.1| aminoacyl-t-RNA synthetase [Arabidopsis lyrata subsp. lyrata]
gi|297321716|gb|EFH52137.1| aminoacyl-t-RNA synthetase
[Arabidopsis lyrata subsp. lyrata]
Length = 1083
Score = 194 bits (494), Expect = 5e-47
Identities = 140/376 (37%), Positives = 187/376 (49%), Gaps = 37/376 (9%)
Frame = +2
Query: 518 ESAQWSTE*ASGRISRPIRWILALHGDVVIPFTIAGLISENIWHGL*NTPSATA------ 679
+S +W++ S SRPIRW++ALHGD+V+PF+ AG+ S N+ GL NT SA+
Sbjct: 526 KSMRWNS---SVMFSRPIRWVMALHGDLVVPFSFAGISSGNVSCGLRNTASASLFVQNAE 582
Query: 680 -------------------------------KQRKKTILELFNALAKEVDGQIVMQSSLL 766
++RKK ILE NALAK V+G++V+ LL
Sbjct: 583 SYEDAMRNSGINIEIEAFMDLCCHFIGYHNLQERKKIILEKSNALAKSVNGRLVVPQDLL 642
Query: 767 DEVVNLVEAPIPVLGKFKESFLELPKELLIM*CIWQYSMFRIGGFMGRYLECTEYATTKT 946
+EV NLVEAP+P++GKFKESFLELP+ELL + F I G+ L
Sbjct: 643 NEVANLVEAPVPLIGKFKESFLELPEELLTIVMQKHQKYFSIIDESGQLLPYFIAVANGA 702
Query: 947 QSNQLAEEGHLSAHILPFSLSLLMLIWIPRMHIQPWLYLKDQLQMEQSIKK*CKKAMKLC 1126
+ + ++G+ +++ + + K
Sbjct: 703 INEDVVKKGN------------------------------------EAVLRARYEDAKFF 726
Query: 1127 SELDTKMLSSSMSWTLVKDSEFGDQLRGILFHEKLGTMLDKMIRIQGTVTDLRMVLGIDE 1306
E+DT+ + SEF DQL+GILFHEKLGTMLDKM R++ V+ L + L IDE
Sbjct: 727 YEVDTRK----------RFSEFRDQLQGILFHEKLGTMLDKMNRLKKMVSKLCLALEIDE 776
Query: 1307 NKLKSVQDAASLAMSDLATAVVTEFTSLSGIMARXXXXXXXXXXXXXXXXXXXXXXXXXX 1486
+ L V+DAASLAMSDLATAVVTEFT+LSG
Sbjct: 777 DLLPVVEDAASLAMSDLATAVVTEFTALSG------------------------------ 806
Query: 1487 IMARHYALRDGYSHQV 1534
IMARHYALRD YS Q+
Sbjct: 807 IMARHYALRDSYSEQI 822