BLASTX nr result

ID: Bupleurum21_contig00001386 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00001386
         (587 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280795.2| PREDICTED: uncharacterized protein LOC100263...    80   2e-13
ref|XP_002512380.1| pentatricopeptide repeat-containing protein,...    80   3e-13
emb|CAN60541.1| hypothetical protein VITISV_018290 [Vitis vinifera]    79   7e-13
ref|XP_002319537.1| predicted protein [Populus trichocarpa] gi|2...    76   5e-12
ref|XP_004156421.1| PREDICTED: putative pentatricopeptide repeat...    74   2e-11

>ref|XP_002280795.2| PREDICTED: uncharacterized protein LOC100263014 [Vitis vinifera]
           gi|296088328|emb|CBI36773.3| unnamed protein product
           [Vitis vinifera]
          Length = 265

 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 37/52 (71%), Positives = 39/52 (75%), Gaps = 7/52 (13%)
 Frame = +1

Query: 451 LLDICS-------ECLDPFDKPECVASDLFVNEVLCAGKGCPYSCVTRAPHA 585
           LL  CS       ECLDPFD+PEC A DLFVNEVLC GKGCPYSCV +APHA
Sbjct: 116 LLSCCSRSEIIERECLDPFDEPECEAFDLFVNEVLCVGKGCPYSCVNKAPHA 167


>ref|XP_002512380.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548341|gb|EEF49832.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 736

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 34/40 (85%), Positives = 35/40 (87%)
 Frame = +1

Query: 466 SECLDPFDKPECVASDLFVNEVLCAGKGCPYSCVTRAPHA 585
           SECLDPFD PEC A D+FVNEVLCAGKGCPYSCV  APHA
Sbjct: 599 SECLDPFDNPECEAFDIFVNEVLCAGKGCPYSCVQTAPHA 638


>emb|CAN60541.1| hypothetical protein VITISV_018290 [Vitis vinifera]
          Length = 322

 Score = 78.6 bits (192), Expect = 7e-13
 Identities = 36/52 (69%), Positives = 38/52 (73%), Gaps = 7/52 (13%)
 Frame = +1

Query: 451 LLDICS-------ECLDPFDKPECVASDLFVNEVLCAGKGCPYSCVTRAPHA 585
           LL  CS       ECLDPFD+PEC A DLFVNEVLC G GCPYSCV +APHA
Sbjct: 115 LLSCCSRSEIIERECLDPFDEPECEAFDLFVNEVLCVGNGCPYSCVNKAPHA 166


>ref|XP_002319537.1| predicted protein [Populus trichocarpa] gi|222857913|gb|EEE95460.1|
           predicted protein [Populus trichocarpa]
          Length = 266

 Score = 75.9 bits (185), Expect = 5e-12
 Identities = 31/39 (79%), Positives = 35/39 (89%)
 Frame = +1

Query: 469 ECLDPFDKPECVASDLFVNEVLCAGKGCPYSCVTRAPHA 585
           ECLDPF++PEC A D+FVNEVLC GKGCPYSCV RAP+A
Sbjct: 130 ECLDPFEEPECEAFDIFVNEVLCVGKGCPYSCVQRAPYA 168


>ref|XP_004156421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 833

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 30/38 (78%), Positives = 32/38 (84%)
 Frame = +1

Query: 469 ECLDPFDKPECVASDLFVNEVLCAGKGCPYSCVTRAPH 582
           ECLDPF+ PEC A D+FVNE LC GKGCPYSCV RAPH
Sbjct: 697 ECLDPFENPECEAFDVFVNEFLCVGKGCPYSCVDRAPH 734


Top