BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00001313
         (1425 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containi...   306   4e-91
ref|XP_002516159.1| pentatricopeptide repeat-containing protein,...   302   3e-86
ref|XP_002324203.1| predicted protein [Populus trichocarpa] gi|2...   276   1e-80
ref|XP_002309456.1| predicted protein [Populus trichocarpa] gi|2...   270   2e-79
gb|ABK96374.1| unknown [Populus trichocarpa x Populus deltoides]      269   3e-79

>ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
           [Vitis vinifera]
          Length = 1580

 Score =  306 bits (783), Expect(2) = 4e-91
 Identities = 157/303 (51%), Positives = 205/303 (67%), Gaps = 9/303 (2%)
 Frame = -3

Query: 883 LEKTVLDRSESAVSNNSDEEARQYWQCQLPDDITPXXXXXXXXXXXXXXXXXXXXXXXXX 704
           L K  LDRSES++SNNSDEEA QYW+CQLPDDITP                         
Sbjct: 58  LGKAKLDRSESSISNNSDEEAHQYWRCQLPDDITPDFKVMGEDESQALGGLSLAGLSLHD 117

Query: 703 XXXXXXANA---LMLKEQKELSVPQIDGDSFAQNMQFSVAPYVDDPLPAGYLNLHAKPWD 533
                  +A    +L EQ+ELS   ++G+SF   M++S +PY +DP  A +L+L  KPWD
Sbjct: 118 STETSRFSAGSGYILNEQQELSPHHVNGNSFTDKMRYSASPYGEDPSSATFLHLPNKPWD 177

Query: 532 NHSVSNDYLLNGVRKGTSFSGNS------DRFDEQQMLETTDMSHLDFLASQFPGFAAES 371
              V  D LL+  R+GT ++GNS      D  +E  M++ TDM+ L+FLA QFPGFAAES
Sbjct: 178 KQIVHGDQLLSNGREGTPYNGNSRHGFVNDMLNEHAMVDETDMNPLEFLALQFPGFAAES 237

Query: 370 LAEVYYANGGDLNLTIEMLTQLELQVEGGISQNHSSKAFSAPNLNAIDFPALSTGDCQNG 191
           L EVY+AN  DLN+TIEMLTQLELQV+GG SQN +SK  SAPNL+ +DFP+L   D QNG
Sbjct: 238 LTEVYFANECDLNMTIEMLTQLELQVDGGFSQNMNSKTLSAPNLSGLDFPSLPVPDGQNG 297

Query: 190 MQKYSGGELQQSANPYRPPEKENLLLFESSSSVPSRGPIDFASAVRKMASQGSGMWRYEE 11
           + KY+G ++QQ  NPYR  +K+NLL+F+S+SS+PSRG  DFASAVRK+A+Q SG+W+++ 
Sbjct: 298 LPKYAGDDIQQGVNPYRSSDKDNLLMFKSNSSIPSRGATDFASAVRKLATQDSGIWKFDR 357

Query: 10  NGS 2
           NG+
Sbjct: 358 NGT 360



 Score = 57.0 bits (136), Expect(2) = 4e-91
 Identities = 29/52 (55%), Positives = 35/52 (67%)
 Frame = -2

Query: 1133 MSLYSKGTLTTDNKPSVAAKLTTLNPNAVEFIPAALKSSPGSNSVADASSKF 978
            MSL  KG    + K    AK+TTLNPNA EF+P AL+SS GS S  DAS++F
Sbjct: 1    MSLSKKGNPINNIKLDSTAKVTTLNPNAAEFVPFALRSSSGSTSTGDASARF 52


>ref|XP_002516159.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223544645|gb|EEF46161.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 1439

 Score =  302 bits (774), Expect(2) = 3e-86
 Identities = 165/305 (54%), Positives = 204/305 (66%), Gaps = 13/305 (4%)
 Frame = -3

Query: 877 KTVLDRSESAVSNNSDEEARQYWQCQLPDDITPXXXXXXXXXXXXXXXXXXXXXXXXXXX 698
           K VLDRSES++S  SDEEA Q+W+ QLPDDITP                           
Sbjct: 64  KAVLDRSESSISTTSDEEAHQFWRHQLPDDITPDFKVMGEDESQSLGGLSLAGLSLHDSS 123

Query: 697 XXXX-----ANALMLKEQKELSVPQIDGDSFAQNMQFSVAPYVDDPLPA-GYLNLHAKPW 536
                     +  +L EQ+E S   I+G SF++ M++++A Y +DP  A GYLNL  KPW
Sbjct: 124 EVPKFPASVGSGYILTEQQEPSPRHINGSSFSEKMRYAIASYGEDPTSAAGYLNLPTKPW 183

Query: 535 DNHSVSNDYLLNGVRKGTSFSGNS------DRFDEQQMLETTDMSHLDFLASQFPGFAAE 374
           D   ++ND+LL   R+   ++GNS      D   EQ +++  DM+ LDFLAS FPGFAAE
Sbjct: 184 DKQIINNDHLLGNGREVHPYNGNSRRGFMNDMLGEQAIVDEPDMNPLDFLASHFPGFAAE 243

Query: 373 SLAEVYYANGGDLNLTIEMLTQLELQVEGGISQNHSSKAFSAPNLNAIDFPALSTGDCQN 194
           SLAEVY+ANG DLNLTIEMLTQLELQV+GG +QN +SKA SAPNL+A+DFPAL   D QN
Sbjct: 244 SLAEVYFANGYDLNLTIEMLTQLELQVDGGFNQNMNSKALSAPNLSAMDFPALPVPDSQN 303

Query: 193 GMQKYSGGELQQSANPYRPPEKENLLLFESSSSVPSR-GPIDFASAVRKMASQGSGMWRY 17
              KYSG ++QQS NPYR  +KEN+LLF+SSSS PSR G IDFASAVRK+ASQ SG+W+Y
Sbjct: 304 SPSKYSGDDIQQSGNPYRSSDKENILLFKSSSSTPSRGGAIDFASAVRKLASQDSGIWKY 363

Query: 16  EENGS 2
           E NGS
Sbjct: 364 ERNGS 368



 Score = 44.3 bits (103), Expect(2) = 3e-86
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
 Frame = -2

Query: 1133 MSLYSKGTLTTDNKPSVAAKLTTLNPNAVEFIPAALKS-SPGSNSVADASSKFA 975
            MSL  KG+ T   K ++ +K T LNPNA EF+P +L+S S  S S ++A++  A
Sbjct: 1    MSLSKKGSQTNTTKLNIPSKATALNPNAAEFVPFSLRSLSSPSGSTSNAAATTA 54


>ref|XP_002324203.1| predicted protein [Populus trichocarpa] gi|222865637|gb|EEF02768.1|
           predicted protein [Populus trichocarpa]
          Length = 583

 Score =  276 bits (706), Expect(2) = 1e-80
 Identities = 151/304 (49%), Positives = 200/304 (65%), Gaps = 12/304 (3%)
 Frame = -3

Query: 877 KTVLDRSESAVSNNSDEEARQYWQCQLPDDITPXXXXXXXXXXXXXXXXXXXXXXXXXXX 698
           K+VLDRSES+VSN SD+EA Q+W+ QLPDDITP                           
Sbjct: 64  KSVLDRSESSVSNASDDEAHQFWRHQLPDDITPDFKVMNEDESQGLGGLSLAGLSLHDSS 123

Query: 697 XXXXANA-----LMLKEQKELSVPQIDGDSFAQNMQFSVAPYVDDPLPAGYLNLHAKPWD 533
                +A      +L EQ+E S   I+G SF++NM+++VA Y +DP  A +LNL  KPWD
Sbjct: 124 EVPRFHASSRSGYVLTEQQEPSPHHINGSSFSENMRYAVASYGEDPTSASFLNLPTKPWD 183

Query: 532 NHSVSNDYLLNGVRKGTSFSGNS------DRFDEQQMLETTDMSHLDFLASQFPGFAAES 371
               ++D LL+  R+   ++GNS      +   E  +++ T+++ L+FLASQFPGFAAES
Sbjct: 184 KQIANSDQLLSNGREVHPYNGNSRHGFRSEILGEHAIVDDTEINPLEFLASQFPGFAAES 243

Query: 370 LAEVYYANGGDLNLTIEMLTQLELQVEGGISQNHSSKAFSAP-NLNAIDFPALSTGDCQN 194
           LAEVY+AN  DLNLTIEMLTQLELQV+GG +Q  +SK  SAP NL+A+DFPAL+  D QN
Sbjct: 244 LAEVYFANACDLNLTIEMLTQLELQVDGGFNQTTNSKTVSAPTNLSALDFPALTVPDNQN 303

Query: 193 GMQKYSGGELQQSANPYRPPEKENLLLFESSSSVPSRGPIDFASAVRKMASQGSGMWRYE 14
           G  KY+G +LQQ+  PYR   K+N+L+F+S +S  SRG +DFASAVRK+ASQ S MW ++
Sbjct: 304 GPSKYAGDDLQQAGIPYRSSNKDNMLVFKSGASFSSRGAVDFASAVRKLASQDSSMWNHD 363

Query: 13  ENGS 2
            NGS
Sbjct: 364 RNGS 367



 Score = 51.6 bits (122), Expect(2) = 1e-80
 Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 4/57 (7%)
 Frame = -2

Query: 1133 MSLYSKGTLTTDNKPSVAAKLTTLNPNAVEFIPAALKSSP----GSNSVADASSKFA 975
            M+L  KG+LT D K S+  K TTLNPNA EF+P +L+SS      +++  DA++K A
Sbjct: 1    MNLSKKGSLTNDTKLSLPNKATTLNPNAAEFVPFSLRSSSSPSGSTSNTTDAATKLA 57


>ref|XP_002309456.1| predicted protein [Populus trichocarpa] gi|222855432|gb|EEE92979.1|
           predicted protein [Populus trichocarpa]
          Length = 581

 Score =  270 bits (690), Expect(2) = 2e-79
 Identities = 145/302 (48%), Positives = 192/302 (63%), Gaps = 10/302 (3%)
 Frame = -3

Query: 877 KTVLDRSESAVSNNSDEEARQYWQCQLPDDITPXXXXXXXXXXXXXXXXXXXXXXXXXXX 698
           K VLDRSES+VSN SD+EA Q+W+ QLPDDITP                           
Sbjct: 64  KAVLDRSESSVSNASDDEAHQFWRHQLPDDITPDFKVMSDDESQGLGGLSLAGLSLHDSE 123

Query: 697 XXXX----ANALMLKEQKELSVPQIDGDSFAQNMQFSVAPYVDDPLPAGYLNLHAKPWDN 530
                    +  +L EQ+E S   ++G SF + M++  A Y +DP  A +LNL  KPWD 
Sbjct: 124 VPRFHASSRSGYVLTEQQEPSPRHMNGSSFGEKMRYPSASYGEDPSSASFLNLPTKPWDK 183

Query: 529 HSVSNDYLLNGVRKGTSFSGNS------DRFDEQQMLETTDMSHLDFLASQFPGFAAESL 368
              + D+LL   R+   ++GNS      +   E  +++ T+++ L FLASQFPGFA ESL
Sbjct: 184 QIANGDHLLGNGREVHPYNGNSRHGFRSEILGEHAIVDDTEINPLGFLASQFPGFATESL 243

Query: 367 AEVYYANGGDLNLTIEMLTQLELQVEGGISQNHSSKAFSAPNLNAIDFPALSTGDCQNGM 188
           AEVY+A+G DLNLT+EMLTQLELQV+G  +QN +SK  SAPNL+A+DFPAL+  D QNG 
Sbjct: 244 AEVYFASGCDLNLTVEMLTQLELQVDGSFNQNTNSKTLSAPNLSALDFPALTVLDNQNGS 303

Query: 187 QKYSGGELQQSANPYRPPEKENLLLFESSSSVPSRGPIDFASAVRKMASQGSGMWRYEEN 8
            KY+G +LQQ++ PYR   K+N+LLF+   S  SRG +DFASAVRK+ASQ S MW+++ N
Sbjct: 304 SKYTGDDLQQASVPYRSSNKDNMLLFKPGGSFSSRGAVDFASAVRKLASQDSSMWKHDRN 363

Query: 7   GS 2
           GS
Sbjct: 364 GS 365



 Score = 54.3 bits (129), Expect(2) = 2e-79
 Identities = 28/56 (50%), Positives = 40/56 (71%), Gaps = 4/56 (7%)
 Frame = -2

Query: 1133 MSLYSKGTLTTDNKPSVAAKLTTLNPNAVEFIPAALKSSP----GSNSVADASSKF 978
            MSL  KG+LT D K ++ +K TTLNPNA EF+P +L+SS      +++ ADA++KF
Sbjct: 1    MSLSKKGSLTNDTKLNLPSKATTLNPNAAEFVPFSLRSSSSPSGSTSNSADAATKF 56


>gb|ABK96374.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 581

 Score =  269 bits (687), Expect(2) = 3e-79
 Identities = 145/302 (48%), Positives = 191/302 (63%), Gaps = 10/302 (3%)
 Frame = -3

Query: 877 KTVLDRSESAVSNNSDEEARQYWQCQLPDDITPXXXXXXXXXXXXXXXXXXXXXXXXXXX 698
           K VLDRSES+VSN SD+EA Q+W+ QLPDDITP                           
Sbjct: 64  KAVLDRSESSVSNASDDEAHQFWRHQLPDDITPDFKVMSDDESQGLGGLSLAGLSLHDSE 123

Query: 697 XXXX----ANALMLKEQKELSVPQIDGDSFAQNMQFSVAPYVDDPLPAGYLNLHAKPWDN 530
                    +  +L EQ+E S   ++G SF + M++  A Y +DP  A +LNL  KPWD 
Sbjct: 124 VPRFHASSRSGYVLTEQQEPSPRHMNGSSFGEKMRYPSASYGEDPSSASFLNLPTKPWDK 183

Query: 529 HSVSNDYLLNGVRKGTSFSGNS------DRFDEQQMLETTDMSHLDFLASQFPGFAAESL 368
              + D+LL   R+   ++GNS      +   E  +++ T+++ L FLASQFPGFA ESL
Sbjct: 184 QIANGDHLLGNGREVHPYNGNSRHGFRSEILGEHAIVDDTEINPLGFLASQFPGFATESL 243

Query: 367 AEVYYANGGDLNLTIEMLTQLELQVEGGISQNHSSKAFSAPNLNAIDFPALSTGDCQNGM 188
           AEVY+A+G DLNLT+EMLTQLELQV+G  +QN +SK  SAPNL+A+DFPAL+  D QNG 
Sbjct: 244 AEVYFASGCDLNLTVEMLTQLELQVDGSFNQNTNSKTLSAPNLSALDFPALTVLDNQNGS 303

Query: 187 QKYSGGELQQSANPYRPPEKENLLLFESSSSVPSRGPIDFASAVRKMASQGSGMWRYEEN 8
            KY+G +LQQ++ PYR   K+N LLF+   S  SRG +DFASAVRK+ASQ S MW+++ N
Sbjct: 304 SKYTGDDLQQASVPYRSSNKDNTLLFKPGGSFSSRGAVDFASAVRKLASQDSSMWKHDRN 363

Query: 7   GS 2
           GS
Sbjct: 364 GS 365



 Score = 54.3 bits (129), Expect(2) = 3e-79
 Identities = 28/56 (50%), Positives = 40/56 (71%), Gaps = 4/56 (7%)
 Frame = -2

Query: 1133 MSLYSKGTLTTDNKPSVAAKLTTLNPNAVEFIPAALKSSP----GSNSVADASSKF 978
            MSL  KG+LT D K ++ +K TTLNPNA EF+P +L+SS      +++ ADA++KF
Sbjct: 1    MSLSKKGSLTNDTKLNLPSKATTLNPNAAEFVPFSLRSSSSPSGSTSNSADAATKF 56