BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00001101
         (1008 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAA90282.1| U1snRNP-specific protein, U1A [Solanum tuberosum]     328   1e-87
ref|XP_002270967.1| PREDICTED: U1 small nuclear ribonucleoprotei...   325   1e-86
ref|XP_004156835.1| PREDICTED: U1 small nuclear ribonucleoprotei...   322   7e-86
gb|ACJ84781.1| unknown [Medicago truncatula]                          317   2e-84
gb|ABK94716.1| unknown [Populus trichocarpa]                          316   6e-84

>emb|CAA90282.1| U1snRNP-specific protein, U1A [Solanum tuberosum]
          Length = 253

 Score =  328 bits (841), Expect = 1e-87
 Identities = 164/238 (68%), Positives = 183/238 (76%), Gaps = 2/238 (0%)
 Frame = +3

Query: 72  GGDVPVNNTIYXXXXXXXXXXXXXXXSLHAVFSQFGEILEILAFKTLKHKGQAWVVFADV 251
           GG+ P N TIY               S+HAVFSQFG+ILE+LAFKTLKHKGQAWVVF +V
Sbjct: 16  GGETPPNVTIYINNLNEKIKLEELKKSMHAVFSQFGKILEVLAFKTLKHKGQAWVVFEEV 75

Query: 252 SSAPKAIQKMQNFPFYDKPMRIQYARTKSDIIAKKDGTFVPXXXXXXXXXXXXXXXXQHD 431
           SSA  A+++MQ FPFYDKPMRIQYA+TKSD++AK DGTFVP                Q D
Sbjct: 76  SSASNALRQMQGFPFYDKPMRIQYAKTKSDVVAKADGTFVPREKRKRHEDKGRKKKDQQD 135

Query: 432 ANQAAMGLNPAFNGAYGATPQLSQIPYM--AKSAVPEAPAPPNSILFIQNLPHQTTPMML 605
           +NQA MGLNPA+ GAYGA P  SQIPYM  AK+AVPEAPAPPNSILF+QNLPHQ+TPMML
Sbjct: 136 SNQAGMGLNPAYAGAYGAAPPFSQIPYMGGAKAAVPEAPAPPNSILFVQNLPHQSTPMML 195

Query: 606 QMLFCQYTGFKEVRMVEAKPGIAFVEYENEAQSTQAMMGLQGFKIMPENPMLITYAKK 779
           QMLFCQY GFKEVRM+EAKPGIAF+EY +E QST AM  LQGFKI  ENPMLITYAKK
Sbjct: 196 QMLFCQYPGFKEVRMIEAKPGIAFIEYGDEMQSTVAMQALQGFKITAENPMLITYAKK 253


>ref|XP_002270967.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Vitis vinifera]
          Length = 245

 Score =  325 bits (832), Expect = 1e-86
 Identities = 166/245 (67%), Positives = 187/245 (76%), Gaps = 3/245 (1%)
 Frame = +3

Query: 54  MAEISVGGDVPVNNTIYXXXXXXXXXXXXXXXSLHAVFSQFGEILEILAFKTLKHKGQAW 233
           MAE++ GG++  N TIY               SL AVFSQFG+I+E+LAFKTLKHKGQAW
Sbjct: 1   MAELNTGGEISPNMTIYINNLNEKIKLEELKKSLFAVFSQFGKIMEVLAFKTLKHKGQAW 60

Query: 234 VVFADVSSAPKAIQKMQNFPFYDKPMRIQYARTKSDIIAKKDGTFVPXXXXXXXXXXXXX 413
           VVF +VSSA  A+++MQ FPFYDKPMRIQYA+TKSD+IAK DGTFVP             
Sbjct: 61  VVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVIAKADGTFVPRERRRRHDDRAGR 120

Query: 414 XXX-QHDANQAAMGLNPAFNGAYGATPQLSQIPYM--AKSAVPEAPAPPNSILFIQNLPH 584
               QHDANQA +G+NPA+ GAYGA P LSQIPY+  AKSAVPEAPAPPN+ILFIQNLPH
Sbjct: 121 KRREQHDANQAGVGVNPAYGGAYGAAPPLSQIPYLGGAKSAVPEAPAPPNNILFIQNLPH 180

Query: 585 QTTPMMLQMLFCQYTGFKEVRMVEAKPGIAFVEYENEAQSTQAMMGLQGFKIMPENPMLI 764
           + TPMMLQM FCQY GFKEVRMVEAKPGIAFVEY +E QST AM GLQG KI  +NPMLI
Sbjct: 181 EATPMMLQMFFCQYPGFKEVRMVEAKPGIAFVEYGDEMQSTVAMQGLQGLKINQQNPMLI 240

Query: 765 TYAKK 779
           TYAKK
Sbjct: 241 TYAKK 245


>ref|XP_004156835.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Cucumis
           sativus]
          Length = 242

 Score =  322 bits (826), Expect = 7e-86
 Identities = 166/243 (68%), Positives = 184/243 (75%), Gaps = 1/243 (0%)
 Frame = +3

Query: 54  MAEISV-GGDVPVNNTIYXXXXXXXXXXXXXXXSLHAVFSQFGEILEILAFKTLKHKGQA 230
           MAE++  G +VP N TIY               SL+AVFSQFG+ILE+LAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 231 WVVFADVSSAPKAIQKMQNFPFYDKPMRIQYARTKSDIIAKKDGTFVPXXXXXXXXXXXX 410
           WVVF +VSSA  A+++MQ FPFYDKPMRIQYA+TKSDIIAK DG+FVP            
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGR 120

Query: 411 XXXXQHDANQAAMGLNPAFNGAYGATPQLSQIPYMAKSAVPEAPAPPNSILFIQNLPHQT 590
               QHDANQA MGLNPAF GAYGAT   SQ+PY     VPEAPAPPNSILF+QNLPH+T
Sbjct: 121 KKKEQHDANQAGMGLNPAFAGAYGATAH-SQVPYSGGVMVPEAPAPPNSILFVQNLPHET 179

Query: 591 TPMMLQMLFCQYTGFKEVRMVEAKPGIAFVEYENEAQSTQAMMGLQGFKIMPENPMLITY 770
           TPMMLQMLFCQY GFKEVRMVEAKPGIAFVEY +E QST AM  LQGFK+ P+N MLITY
Sbjct: 180 TPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITY 239

Query: 771 AKK 779
           AKK
Sbjct: 240 AKK 242


>gb|ACJ84781.1| unknown [Medicago truncatula]
          Length = 245

 Score =  317 bits (813), Expect = 2e-84
 Identities = 165/245 (67%), Positives = 185/245 (75%), Gaps = 3/245 (1%)
 Frame = +3

Query: 54  MAEISVGGDVPVNNTIYXXXXXXXXXXXXXXXSLHAVFSQFGEILEILAFKTLKHKGQAW 233
           MAE++   + P N TIY               SLHAVFSQFG+ILE+LAFKTLKHKGQAW
Sbjct: 1   MAEVNANPEPPQNMTIYINNLNEKIKIDELKKSLHAVFSQFGKILEVLAFKTLKHKGQAW 60

Query: 234 VVFADVSSAPKAIQKMQNFPFYDKPMRIQYARTKSDIIAKKDGTFVPXXXXXXXXXXXXX 413
           V+F DV+SA  A+++MQ FPFYDKPMRIQYARTKSD+IAK +GTFVP             
Sbjct: 61  VIFEDVTSASNALRQMQGFPFYDKPMRIQYARTKSDVIAKAEGTFVPREKRKRHDDKAGK 120

Query: 414 XXX-QHDANQAAMGLNPAFNGAYGATPQLSQIPYM--AKSAVPEAPAPPNSILFIQNLPH 584
               Q+DAN A  GLNPA+ GAYGATP LSQIPY   AKS +PEAPAPPN+ILFIQNLP+
Sbjct: 121 KRKDQNDANLAGTGLNPAYAGAYGATPALSQIPYPGGAKSLLPEAPAPPNNILFIQNLPN 180

Query: 585 QTTPMMLQMLFCQYTGFKEVRMVEAKPGIAFVEYENEAQSTQAMMGLQGFKIMPENPMLI 764
           +TTPMMLQMLF QY GFKEVRMVEAKPGIAFVEY +E QST AM  LQGFKI P+NPMLI
Sbjct: 181 ETTPMMLQMLFLQYPGFKEVRMVEAKPGIAFVEYGDEMQSTMAMQALQGFKIAPQNPMLI 240

Query: 765 TYAKK 779
           TYAKK
Sbjct: 241 TYAKK 245


>gb|ABK94716.1| unknown [Populus trichocarpa]
          Length = 254

 Score =  316 bits (809), Expect = 6e-84
 Identities = 165/240 (68%), Positives = 179/240 (74%), Gaps = 2/240 (0%)
 Frame = +3

Query: 66  SVGGDVPVNNTIYXXXXXXXXXXXXXXXSLHAVFSQFGEILEILAFKTLKHKGQAWVVFA 245
           S G DV  N TIY               SLHAVFSQFG+ILEILAFKTLKHKGQAWV+F 
Sbjct: 15  STGTDVSQNMTIYINNLNEKIKIDELKTSLHAVFSQFGKILEILAFKTLKHKGQAWVIFE 74

Query: 246 DVSSAPKAIQKMQNFPFYDKPMRIQYARTKSDIIAKKDGTFVPXXXXXXXXXXXXXXXXQ 425
           DV SA  AI++MQ+FPFYDKPMRIQYA+TKSDIIAK DGTFVP                Q
Sbjct: 75  DVQSASNAIRQMQSFPFYDKPMRIQYAKTKSDIIAKADGTFVPREKRRRHEEKGKKKKDQ 134

Query: 426 HDANQAAMGLNPAFNGAYGATPQLSQIPYMA--KSAVPEAPAPPNSILFIQNLPHQTTPM 599
           HDANQ  +GL PA+ GAYG TP L QIPY    KS VPEAPAPPN+ILFIQNLP++TTPM
Sbjct: 135 HDANQVGVGLTPAYGGAYGTTPSLLQIPYPGGVKSMVPEAPAPPNNILFIQNLPNETTPM 194

Query: 600 MLQMLFCQYTGFKEVRMVEAKPGIAFVEYENEAQSTQAMMGLQGFKIMPENPMLITYAKK 779
           MLQMLF QY GFKEVRMVEAKPGIAFVEY +E QST AM GLQGFKI+ +N MLITYAKK
Sbjct: 195 MLQMLFQQYPGFKEVRMVEAKPGIAFVEYGDEMQSTGAMHGLQGFKILQQNSMLITYAKK 254