BLASTX nr result
ID: Bupleurum21_contig00000464
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00000464
(1253 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002314343.1| predicted protein [Populus trichocarpa] gi|2... 562 e-158
emb|CBI26041.3| unnamed protein product [Vitis vinifera] 561 e-158
ref|XP_002275635.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 561 e-158
ref|XP_002882503.1| hypothetical protein ARALYDRAFT_478019 [Arab... 554 e-155
ref|NP_187354.1| DEAD-box ATP-dependent RNA helicase 50 [Arabido... 553 e-155
>ref|XP_002314343.1| predicted protein [Populus trichocarpa] gi|222863383|gb|EEF00514.1|
predicted protein [Populus trichocarpa]
Length = 425
Score = 562 bits (1449), Expect = e-158
Identities = 286/393 (72%), Positives = 332/393 (84%), Gaps = 2/393 (0%)
Frame = -1
Query: 1253 LRSRLFNRPSHIQAMAFAPVFEKKSCIIADQSGSGKTLAYLLPVIQRLRQDELEGLRKSL 1074
L+ ++F RPSHIQAMAFAPV + KSCIIADQSGSGKT+AYL+P+IQRLRQ+EL+GL +S
Sbjct: 32 LKGQVFVRPSHIQAMAFAPVIDGKSCIIADQSGSGKTMAYLIPLIQRLRQEELQGLGQSS 91
Query: 1073 SQNPRVVILVPTAELASQVLSNCRLMSKFGVPFRSMVVTGGFRQKTQLESLRQELDVVIA 894
SQ+PRV+ILVPTAELASQVL+NCR MSK GVPFRSMVVTGGFRQ+TQLE+L Q +DV+IA
Sbjct: 92 SQSPRVLILVPTAELASQVLNNCRSMSKHGVPFRSMVVTGGFRQRTQLENLEQGVDVLIA 151
Query: 893 TPGRFTYLVKEGFLHLNNLTCAVLDEVDILYGDEDFEPALQILMNSSPYTTQYLFVTATL 714
TPGRF +L+KEGFL L NL CAVLDE+DIL+ DE+FE +LQ L+NSSP TTQYLFVTATL
Sbjct: 152 TPGRFMFLIKEGFLKLQNLKCAVLDEIDILFNDENFEASLQGLINSSPVTTQYLFVTATL 211
Query: 713 PVNIYNKLVEVFPDCEVIMGPGMHRTSPGLEEILVDCSGDDGAEKTPETAFMNKKTALLR 534
PV++ NKL+EVFPDCEVIMGPG+HRTS LEEILVDCSG+ AEKTPETAF+NKK+ALL+
Sbjct: 212 PVDVCNKLIEVFPDCEVIMGPGVHRTSARLEEILVDCSGEIEAEKTPETAFLNKKSALLQ 271
Query: 533 LVEERQVAKTIVFCNKIETCRKVENALQRFDRKEYRVRALPFHAALAQEARLANMEEFRS 354
LVE+ V+KTI+FCNKIETCRKVENAL+R DRK VR LPFHAALAQE+RLANM+EF +
Sbjct: 272 LVEQSPVSKTIIFCNKIETCRKVENALKRTDRKGTLVRVLPFHAALAQESRLANMKEFMN 331
Query: 353 SQR--KDSLFLVCTDRASRGIDFTGVDHVILFDFPRDPSEYXXXXXXXXXXXXXXXXXXX 180
R ++SLFLVCTDRASRGIDF+GVDHV+LFDFPRDPSEY
Sbjct: 332 PSRPKEESLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTARGARGNGKAFI 391
Query: 179 XXXXKQVSLARRIIERNMKGHPLHDVPSAYEQM 81
KQV LAR+II+RN KGHPLHDVP AYEQ+
Sbjct: 392 FAVGKQVFLARKIIQRNEKGHPLHDVPFAYEQV 424
>emb|CBI26041.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 561 bits (1447), Expect = e-158
Identities = 291/392 (74%), Positives = 322/392 (82%), Gaps = 1/392 (0%)
Frame = -1
Query: 1253 LRSRLFNRPSHIQAMAFAPVFEKKSCIIADQSGSGKTLAYLLPVIQRLRQDELEGLRKSL 1074
LR +LF RPSHIQAMAFA V E KSCIIADQSGSGKTLAYLLPVIQRLR++EL+GL KS
Sbjct: 256 LRGQLFVRPSHIQAMAFATVMEGKSCIIADQSGSGKTLAYLLPVIQRLREEELQGLGKSS 315
Query: 1073 SQNPRVVILVPTAELASQVLSNCRLMSKFGVPFRSMVVTGGFRQKTQLESLRQELDVVIA 894
+ P+VVILVPTAELASQVLSNCR +SKFG PFRSM TGGFRQ+TQLE+L+Q+LDV+IA
Sbjct: 316 AGCPQVVILVPTAELASQVLSNCRSISKFGAPFRSMAATGGFRQRTQLENLQQDLDVLIA 375
Query: 893 TPGRFTYLVKEGFLHLNNLTCAVLDEVDILYGDEDFEPALQILMNSSPYTTQYLFVTATL 714
TPGRF +L+KEGFL L NL CAVLDEVDIL DEDFE ALQ L+NSSP T QYLFVTATL
Sbjct: 376 TPGRFMFLIKEGFLQLTNLRCAVLDEVDILLNDEDFELALQTLINSSPVTMQYLFVTATL 435
Query: 713 PVNIYNKLVEVFPDCEVIMGPGMHRTSPGLEEILVDCSGDDGAEKTPETAFMNKKTALLR 534
PV IYNKLVEVFPDCEVIMGPGMHR S LEE+LVDCSGDDG EKTPE+AF+NKK+ALL+
Sbjct: 436 PVGIYNKLVEVFPDCEVIMGPGMHRISSRLEEVLVDCSGDDGTEKTPESAFLNKKSALLQ 495
Query: 533 LVEERQVAKTIVFCNKIETCRKVENALQRFDRKEYRVRALPFHAALAQEARLANMEEFRS 354
LVE V++TIVFCNKIETCRKVEN L+ FDRK R+R L FHAAL QE+RLAN++EF +
Sbjct: 496 LVEGSPVSRTIVFCNKIETCRKVENVLKHFDRKGVRLRVLAFHAALTQESRLANLKEFLN 555
Query: 353 SQRKD-SLFLVCTDRASRGIDFTGVDHVILFDFPRDPSEYXXXXXXXXXXXXXXXXXXXX 177
S + SLFLVCTDRASRGIDF VDHV+LFDFPRDPSEY
Sbjct: 556 SHSEGVSLFLVCTDRASRGIDFAKVDHVVLFDFPRDPSEYVRRVGRTARGAGGKGKAFVY 615
Query: 176 XXXKQVSLARRIIERNMKGHPLHDVPSAYEQM 81
KQVSLARRIIERN KGHPLH+VPSAYE M
Sbjct: 616 VVGKQVSLARRIIERNKKGHPLHNVPSAYELM 647
>ref|XP_002275635.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like [Vitis
vinifera]
Length = 707
Score = 561 bits (1447), Expect = e-158
Identities = 291/392 (74%), Positives = 322/392 (82%), Gaps = 1/392 (0%)
Frame = -1
Query: 1253 LRSRLFNRPSHIQAMAFAPVFEKKSCIIADQSGSGKTLAYLLPVIQRLRQDELEGLRKSL 1074
LR +LF RPSHIQAMAFA V E KSCIIADQSGSGKTLAYLLPVIQRLR++EL+GL KS
Sbjct: 315 LRGQLFVRPSHIQAMAFATVMEGKSCIIADQSGSGKTLAYLLPVIQRLREEELQGLGKSS 374
Query: 1073 SQNPRVVILVPTAELASQVLSNCRLMSKFGVPFRSMVVTGGFRQKTQLESLRQELDVVIA 894
+ P+VVILVPTAELASQVLSNCR +SKFG PFRSM TGGFRQ+TQLE+L+Q+LDV+IA
Sbjct: 375 AGCPQVVILVPTAELASQVLSNCRSISKFGAPFRSMAATGGFRQRTQLENLQQDLDVLIA 434
Query: 893 TPGRFTYLVKEGFLHLNNLTCAVLDEVDILYGDEDFEPALQILMNSSPYTTQYLFVTATL 714
TPGRF +L+KEGFL L NL CAVLDEVDIL DEDFE ALQ L+NSSP T QYLFVTATL
Sbjct: 435 TPGRFMFLIKEGFLQLTNLRCAVLDEVDILLNDEDFELALQTLINSSPVTMQYLFVTATL 494
Query: 713 PVNIYNKLVEVFPDCEVIMGPGMHRTSPGLEEILVDCSGDDGAEKTPETAFMNKKTALLR 534
PV IYNKLVEVFPDCEVIMGPGMHR S LEE+LVDCSGDDG EKTPE+AF+NKK+ALL+
Sbjct: 495 PVGIYNKLVEVFPDCEVIMGPGMHRISSRLEEVLVDCSGDDGTEKTPESAFLNKKSALLQ 554
Query: 533 LVEERQVAKTIVFCNKIETCRKVENALQRFDRKEYRVRALPFHAALAQEARLANMEEFRS 354
LVE V++TIVFCNKIETCRKVEN L+ FDRK R+R L FHAAL QE+RLAN++EF +
Sbjct: 555 LVEGSPVSRTIVFCNKIETCRKVENVLKHFDRKGVRLRVLAFHAALTQESRLANLKEFLN 614
Query: 353 SQRKD-SLFLVCTDRASRGIDFTGVDHVILFDFPRDPSEYXXXXXXXXXXXXXXXXXXXX 177
S + SLFLVCTDRASRGIDF VDHV+LFDFPRDPSEY
Sbjct: 615 SHSEGVSLFLVCTDRASRGIDFAKVDHVVLFDFPRDPSEYVRRVGRTARGAGGKGKAFVY 674
Query: 176 XXXKQVSLARRIIERNMKGHPLHDVPSAYEQM 81
KQVSLARRIIERN KGHPLH+VPSAYE M
Sbjct: 675 VVGKQVSLARRIIERNKKGHPLHNVPSAYELM 706
>ref|XP_002882503.1| hypothetical protein ARALYDRAFT_478019 [Arabidopsis lyrata subsp.
lyrata] gi|297328343|gb|EFH58762.1| hypothetical protein
ARALYDRAFT_478019 [Arabidopsis lyrata subsp. lyrata]
Length = 782
Score = 554 bits (1428), Expect = e-155
Identities = 277/390 (71%), Positives = 323/390 (82%), Gaps = 1/390 (0%)
Frame = -1
Query: 1253 LRSRLFNRPSHIQAMAFAPVFEKKSCIIADQSGSGKTLAYLLPVIQRLRQDELEGLRKSL 1074
L+ + F+RP+HIQAMAF+PV + KSCIIADQSGSGKTLAYL+P IQRLR++EL+G KS
Sbjct: 390 LKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPAIQRLREEELQGQSKSS 449
Query: 1073 SQNPRVVILVPTAELASQVLSNCRLMSKFGVPFRSMVVTGGFRQKTQLESLRQELDVVIA 894
S PRV++LVPTAELASQVL+NCR +SK GVPFRSMVVTGGFRQ+TQLE+L Q +DV+IA
Sbjct: 450 SGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGVDVLIA 509
Query: 893 TPGRFTYLVKEGFLHLNNLTCAVLDEVDILYGDEDFEPALQILMNSSPYTTQYLFVTATL 714
TPGRF YL+ EG L L+NL CA+LDEVDIL+GD++FE ALQ L+NSSP T QYLFVTATL
Sbjct: 510 TPGRFMYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQSLINSSPVTAQYLFVTATL 569
Query: 713 PVNIYNKLVEVFPDCEVIMGPGMHRTSPGLEEILVDCSGDDGAEKTPETAFMNKKTALLR 534
P+ IYNKLVEVFPDCEV+MGP +HR S LEE LVDCSGDD AEKTPETAF NKKTALL+
Sbjct: 570 PLEIYNKLVEVFPDCEVVMGPRVHRVSNALEEFLVDCSGDDNAEKTPETAFQNKKTALLQ 629
Query: 533 LVEERQVAKTIVFCNKIETCRKVENALQRFDRKEYRVRALPFHAALAQEARLANMEEFRS 354
++EE V+KTI+FCNKIETCRKVEN +R DRKE ++ LPFHAAL+QE+RL NM+EF S
Sbjct: 630 IIEENPVSKTIIFCNKIETCRKVENIFKRVDRKERQLHVLPFHAALSQESRLTNMQEFTS 689
Query: 353 SQ-RKDSLFLVCTDRASRGIDFTGVDHVILFDFPRDPSEYXXXXXXXXXXXXXXXXXXXX 177
SQ ++SLFLVCTDRASRGIDF+GVDHV+LFDFPRDPSEY
Sbjct: 690 SQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTARGARGEGKAFIF 749
Query: 176 XXXKQVSLARRIIERNMKGHPLHDVPSAYE 87
KQV+LARRIIERN KGHP+HDVP+AYE
Sbjct: 750 VVGKQVALARRIIERNQKGHPVHDVPNAYE 779
>ref|NP_187354.1| DEAD-box ATP-dependent RNA helicase 50 [Arabidopsis thaliana]
gi|108861898|sp|Q8GUG7.2|RH50_ARATH RecName:
Full=DEAD-box ATP-dependent RNA helicase 50
gi|6729005|gb|AAF27002.1|AC016827_13 putative DEAD/DEAH
box helicase [Arabidopsis thaliana]
gi|15081735|gb|AAK82522.1| AT3g06980/F17A9_13
[Arabidopsis thaliana] gi|16519315|emb|CAC82719.1|
DEAD-box RNA Helicase [Arabidopsis thaliana]
gi|21360513|gb|AAM47372.1| AT3g06980/F17A9_13
[Arabidopsis thaliana] gi|332640962|gb|AEE74483.1|
DEAD-box ATP-dependent RNA helicase 50 [Arabidopsis
thaliana]
Length = 781
Score = 553 bits (1426), Expect = e-155
Identities = 278/390 (71%), Positives = 323/390 (82%), Gaps = 1/390 (0%)
Frame = -1
Query: 1253 LRSRLFNRPSHIQAMAFAPVFEKKSCIIADQSGSGKTLAYLLPVIQRLRQDELEGLRKSL 1074
L+ + F+RP+HIQAMAF+PV + KSCIIADQSGSGKTLAYL+PVIQRLR++EL+G KS
Sbjct: 389 LKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSS 448
Query: 1073 SQNPRVVILVPTAELASQVLSNCRLMSKFGVPFRSMVVTGGFRQKTQLESLRQELDVVIA 894
PRV++LVPTAELASQVL+NCR +SK GVPFRSMVVTGGFRQ+TQLE+L Q +DV+IA
Sbjct: 449 PGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGVDVLIA 508
Query: 893 TPGRFTYLVKEGFLHLNNLTCAVLDEVDILYGDEDFEPALQILMNSSPYTTQYLFVTATL 714
TPGRFTYL+ EG L L+NL CA+LDEVDIL+GD++FE ALQ L+NSSP T QYLFVTATL
Sbjct: 509 TPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNLINSSPVTAQYLFVTATL 568
Query: 713 PVNIYNKLVEVFPDCEVIMGPGMHRTSPGLEEILVDCSGDDGAEKTPETAFMNKKTALLR 534
P+ IYNKLVEVFPDCEV+MGP +HR S LEE LVDCSGDD AEKTPETAF NKKTALL+
Sbjct: 569 PLEIYNKLVEVFPDCEVVMGPRVHRVSNALEEFLVDCSGDDNAEKTPETAFQNKKTALLQ 628
Query: 533 LVEERQVAKTIVFCNKIETCRKVENALQRFDRKEYRVRALPFHAALAQEARLANMEEFRS 354
++EE V+KTI+FCNKIETCRKVEN +R DRKE ++ LPFHAAL+QE+RL NM+EF S
Sbjct: 629 IMEENPVSKTIIFCNKIETCRKVENIFKRVDRKERQLHVLPFHAALSQESRLTNMQEFTS 688
Query: 353 SQ-RKDSLFLVCTDRASRGIDFTGVDHVILFDFPRDPSEYXXXXXXXXXXXXXXXXXXXX 177
SQ ++SLFLVCTDRASRGIDF+GVDHV+LFDFPRDPSEY
Sbjct: 689 SQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTARGARGKGKAFIF 748
Query: 176 XXXKQVSLARRIIERNMKGHPLHDVPSAYE 87
KQV LARRIIERN KGHP+HDVP+AYE
Sbjct: 749 VVGKQVGLARRIIERNEKGHPVHDVPNAYE 778