BLASTX nr result

ID: Bupleurum21_contig00000369 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00000369
         (529 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002315210.1| predicted protein [Populus trichocarpa] gi|2...   340   1e-91
gb|ABK95600.1| unknown [Populus trichocarpa]                          340   1e-91
gb|ABK96359.1| unknown [Populus trichocarpa x Populus deltoides]      337   7e-91
gb|AFV93500.1| chloroplast ribulose bisphosphate carboxylase/oxy...   337   9e-91
gb|AFV93496.1| chloroplast ribulose bisphosphate carboxylase/oxy...   337   9e-91

>ref|XP_002315210.1| predicted protein [Populus trichocarpa] gi|222864250|gb|EEF01381.1|
           predicted protein [Populus trichocarpa]
          Length = 424

 Score =  340 bits (871), Expect = 1e-91
 Identities = 165/176 (93%), Positives = 172/176 (97%)
 Frame = +1

Query: 1   YSMDNNMDGFYIAPAFMDKLVVHLSKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAK 180
           Y++DNNMDGFYIAPAFMDKLVVH+SKNFM+LPNIKVPLILGVWGGKGQGKSFQCELVFAK
Sbjct: 73  YNLDNNMDGFYIAPAFMDKLVVHISKNFMSLPNIKVPLILGVWGGKGQGKSFQCELVFAK 132

Query: 181 MGVIPIMMSAGELESGNAGEPAKLIRQRYREASDIIMKKGKMSCLFINDLDAGAGRMGGT 360
           MG+ PIMMSAGELESGNAGEPAKLIRQRYREA+DII KKGKM CLFINDLDAGAGR+GGT
Sbjct: 133 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGRLGGT 192

Query: 361 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENCRVPIIVTGNDFSTLYAPLIR 528
           TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEEN RVPIIVTGNDFSTLYAPLIR
Sbjct: 193 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR 248


>gb|ABK95600.1| unknown [Populus trichocarpa]
          Length = 476

 Score =  340 bits (871), Expect = 1e-91
 Identities = 165/176 (93%), Positives = 172/176 (97%)
 Frame = +1

Query: 1   YSMDNNMDGFYIAPAFMDKLVVHLSKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAK 180
           Y++DNNMDGFYIAPAFMDKLVVH+SKNFM+LPNIKVPLILGVWGGKGQGKSFQCELVFAK
Sbjct: 123 YNLDNNMDGFYIAPAFMDKLVVHISKNFMSLPNIKVPLILGVWGGKGQGKSFQCELVFAK 182

Query: 181 MGVIPIMMSAGELESGNAGEPAKLIRQRYREASDIIMKKGKMSCLFINDLDAGAGRMGGT 360
           MG+ PIMMSAGELESGNAGEPAKLIRQRYREA+DII KKGKM CLFINDLDAGAGR+GGT
Sbjct: 183 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGRLGGT 242

Query: 361 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENCRVPIIVTGNDFSTLYAPLIR 528
           TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEEN RVPIIVTGNDFSTLYAPLIR
Sbjct: 243 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR 298


>gb|ABK96359.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 476

 Score =  337 bits (864), Expect = 7e-91
 Identities = 162/176 (92%), Positives = 172/176 (97%)
 Frame = +1

Query: 1   YSMDNNMDGFYIAPAFMDKLVVHLSKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAK 180
           Y++DNNMDG+YIAPAFMDKLVVH+SKNFM+LPNIKVPLILG+WGGKGQGKSFQCELVFAK
Sbjct: 123 YNLDNNMDGYYIAPAFMDKLVVHISKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAK 182

Query: 181 MGVIPIMMSAGELESGNAGEPAKLIRQRYREASDIIMKKGKMSCLFINDLDAGAGRMGGT 360
           MG+ PIMMSAGELESGNAGEPAKLIRQRYREA+DII KKGKM CLFINDLDAGAGR+GGT
Sbjct: 183 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGRLGGT 242

Query: 361 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENCRVPIIVTGNDFSTLYAPLIR 528
           TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKE+N RVPIIVTGNDFSTLYAPLIR
Sbjct: 243 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIR 298


>gb|AFV93500.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
           beta2, partial [Gossypium barbadense]
          Length = 250

 Score =  337 bits (863), Expect = 9e-91
 Identities = 166/176 (94%), Positives = 171/176 (97%)
 Frame = +1

Query: 1   YSMDNNMDGFYIAPAFMDKLVVHLSKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAK 180
           Y +DNNMDGFYIAPAFMDKLVVH++KNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAK
Sbjct: 30  YDLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAK 89

Query: 181 MGVIPIMMSAGELESGNAGEPAKLIRQRYREASDIIMKKGKMSCLFINDLDAGAGRMGGT 360
           MG+ PIMMSAGELESGNAGEPAKLIRQRYREA+DII KKGKM CLFINDLDAGAGRMGGT
Sbjct: 90  MGINPIMMSAGELESGNAGEPAKLIRQRYREAADII-KKGKMCCLFINDLDAGAGRMGGT 148

Query: 361 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENCRVPIIVTGNDFSTLYAPLIR 528
           TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEEN RVPIIVTGNDFSTLYAPLIR
Sbjct: 149 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR 204


>gb|AFV93496.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
           beta2, partial [Gossypium barbadense]
          Length = 296

 Score =  337 bits (863), Expect = 9e-91
 Identities = 166/176 (94%), Positives = 171/176 (97%)
 Frame = +1

Query: 1   YSMDNNMDGFYIAPAFMDKLVVHLSKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAK 180
           Y +DNNMDGFYIAPAFMDKLVVH++KNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAK
Sbjct: 50  YDLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAK 109

Query: 181 MGVIPIMMSAGELESGNAGEPAKLIRQRYREASDIIMKKGKMSCLFINDLDAGAGRMGGT 360
           MG+ PIMMSAGELESGNAGEPAKLIRQRYREA+DII KKGKM CLFINDLDAGAGRMGGT
Sbjct: 110 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADII-KKGKMCCLFINDLDAGAGRMGGT 168

Query: 361 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENCRVPIIVTGNDFSTLYAPLIR 528
           TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEEN RVPIIVTGNDFSTLYAPLIR
Sbjct: 169 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR 224


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