BLASTX nr result
ID: Bupleurum21_contig00000209
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00000209
(1795 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002278318.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 580 0.0
ref|XP_002330044.1| predicted protein [Populus trichocarpa] gi|2... 577 0.0
ref|XP_002330040.1| predicted protein [Populus trichocarpa] gi|2... 573 0.0
ref|XP_003521635.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 570 0.0
ref|XP_004135577.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 563 0.0
>ref|XP_002278318.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic
[Vitis vinifera] gi|296089875|emb|CBI39694.3| unnamed
protein product [Vitis vinifera]
Length = 764
Score = 580 bits (1494), Expect(2) = 0.0
Identities = 304/418 (72%), Positives = 342/418 (81%)
Frame = -2
Query: 1527 VGTPGRIIDLIERNNLKLGEVQFLVLDEADQMLAVGFEEAVEMILKKIPVERQSMLFSAT 1348
VGTPGRIIDLI+ N+LKLGEVQ LVLDEADQMLAVGFEE VE+IL+K+P ERQSMLFSAT
Sbjct: 247 VGTPGRIIDLIKGNSLKLGEVQNLVLDEADQMLAVGFEEDVEVILEKLPSERQSMLFSAT 306
Query: 1347 MPSWVKQISRKYLNSPMTIDLVGNQDEKLAEGIKLYALTSTSTSKRAILSDLVTVYARGG 1168
MP+WVK+++RKYL++P+TIDLVG+ DEKLAEGIKLYA+ +T+TSKR ILSDL+TVYA+GG
Sbjct: 307 MPAWVKKLARKYLDNPLTIDLVGDHDEKLAEGIKLYAIPTTATSKRTILSDLITVYAKGG 366
Query: 1167 KTIVFTQTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFNVLVATDVASR 988
KTIVFTQTKRDADEVS+ALTNSIASEALHGDISQHQRERTLNGFRQGKF VLVATDVA+R
Sbjct: 367 KTIVFTQTKRDADEVSMALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 426
Query: 987 GLDIPNVDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIR 808
GLDIPNVDL ++
Sbjct: 427 GLDIPNVDL---------IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVK 477
Query: 807 SIERDTGCKFEFISPPAVEEVLESSAEQVIATLGGVHPGSVEFFTPTAQKLIDEQGTSAL 628
S+ERD GCKFEFISPPA+EEVLESSAEQV+ATL GVHP SVEFFTPTAQKLI+E+GT AL
Sbjct: 478 SLERDVGCKFEFISPPAIEEVLESSAEQVVATLNGVHPESVEFFTPTAQKLIEEKGTGAL 537
Query: 627 AAAIAQLSGFSRPPSSRSLISYEQGKVTLQLTRDPEYARGFLSAGGVIGFLSSVYTRAAD 448
AAA+A LSGFS+PPS RSLIS+EQG VTLQLTRD Y+RGFLSA V GFLS VY AAD
Sbjct: 538 AAALAHLSGFSQPPSFRSLISHEQGWVTLQLTRDSGYSRGFLSARSVTGFLSDVYPTAAD 597
Query: 447 EIGKIHMIADERVQGAVFDLPEEVAKELLDMQIPPGNTISKITKLPALQDDGPVHDNY 274
E+GKI+++ADERVQGAVFDLPEE+AKELL+ Q+PPGNTISKITKLPALQDDGP D Y
Sbjct: 598 ELGKIYLVADERVQGAVFDLPEEIAKELLNKQMPPGNTISKITKLPALQDDGPAGDYY 655
Score = 111 bits (277), Expect(2) = 0.0
Identities = 56/65 (86%), Positives = 61/65 (93%)
Frame = -1
Query: 1795 ALEGKDLIARAKTGTGKTLAFGIPIIKRLTEDDQERGSQRRTSRLPRALVLAPTRELAKQ 1616
ALEG+DLIARAKTGTGKTLAFGIPIIKRL+EDD++R SQRR+ RLPR LVLAPTRELAKQ
Sbjct: 150 ALEGRDLIARAKTGTGKTLAFGIPIIKRLSEDDEKRTSQRRSGRLPRVLVLAPTRELAKQ 209
Query: 1615 VENEI 1601
VE EI
Sbjct: 210 VEKEI 214
>ref|XP_002330044.1| predicted protein [Populus trichocarpa] gi|222871469|gb|EEF08600.1|
predicted protein [Populus trichocarpa]
Length = 775
Score = 577 bits (1488), Expect(2) = 0.0
Identities = 300/418 (71%), Positives = 342/418 (81%)
Frame = -2
Query: 1527 VGTPGRIIDLIERNNLKLGEVQFLVLDEADQMLAVGFEEAVEMILKKIPVERQSMLFSAT 1348
VGTPGRIIDL++ N+LKLGEV++LVLDEADQML+ GFEE VE+IL+ +P +RQSMLFSAT
Sbjct: 264 VGTPGRIIDLLKGNSLKLGEVEYLVLDEADQMLSFGFEEDVEVILENLPSKRQSMLFSAT 323
Query: 1347 MPSWVKQISRKYLNSPMTIDLVGNQDEKLAEGIKLYALTSTSTSKRAILSDLVTVYARGG 1168
MP+WVK+++RKYL++P+ IDLVG+Q+EKLAEGIKLYAL++T+ SKR ILSDLVTVYA+GG
Sbjct: 324 MPTWVKKLARKYLDNPLQIDLVGDQEEKLAEGIKLYALSATAASKRTILSDLVTVYAKGG 383
Query: 1167 KTIVFTQTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFNVLVATDVASR 988
KTI+FTQTKRDADEVS+ALTN+IASEALHGDISQHQRERTLNGFRQGKF VLVATDVASR
Sbjct: 384 KTIIFTQTKRDADEVSMALTNTIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVASR 443
Query: 987 GLDIPNVDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIR 808
GLDIPNVDL +R
Sbjct: 444 GLDIPNVDL---------IIHYELPNDAETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 494
Query: 807 SIERDTGCKFEFISPPAVEEVLESSAEQVIATLGGVHPGSVEFFTPTAQKLIDEQGTSAL 628
S+ERD GCKFEF+SPPA+EEVLESSAEQV+ATL GVHP SVEFFTPTAQKLI+EQGT+AL
Sbjct: 495 SLERDAGCKFEFVSPPAIEEVLESSAEQVVATLSGVHPESVEFFTPTAQKLIEEQGTNAL 554
Query: 627 AAAIAQLSGFSRPPSSRSLISYEQGKVTLQLTRDPEYARGFLSAGGVIGFLSSVYTRAAD 448
AAA+A LSGFS+PPSSRSLIS+ QG TLQLTRDP Y+RGFLSA V GFLS VY AAD
Sbjct: 555 AAALAHLSGFSQPPSSRSLISHAQGWATLQLTRDPTYSRGFLSARSVTGFLSDVYPAAAD 614
Query: 447 EIGKIHMIADERVQGAVFDLPEEVAKELLDMQIPPGNTISKITKLPALQDDGPVHDNY 274
E+GKIH+IADERVQGAVFDLPEE+AKELL+ QIPPGNTI+KITKLPALQDDGP D Y
Sbjct: 615 EVGKIHVIADERVQGAVFDLPEEIAKELLNKQIPPGNTIAKITKLPALQDDGPPGDFY 672
Score = 111 bits (278), Expect(2) = 0.0
Identities = 57/65 (87%), Positives = 60/65 (92%)
Frame = -1
Query: 1795 ALEGKDLIARAKTGTGKTLAFGIPIIKRLTEDDQERGSQRRTSRLPRALVLAPTRELAKQ 1616
ALEG+DLIARAKTGTGKTLAFGIPIIKRLTED + RGSQRRT RLP+ LVLAPTRELAKQ
Sbjct: 167 ALEGRDLIARAKTGTGKTLAFGIPIIKRLTEDAELRGSQRRTGRLPKVLVLAPTRELAKQ 226
Query: 1615 VENEI 1601
VE EI
Sbjct: 227 VEKEI 231
>ref|XP_002330040.1| predicted protein [Populus trichocarpa] gi|222871465|gb|EEF08596.1|
predicted protein [Populus trichocarpa]
Length = 735
Score = 573 bits (1478), Expect(2) = 0.0
Identities = 298/418 (71%), Positives = 340/418 (81%)
Frame = -2
Query: 1527 VGTPGRIIDLIERNNLKLGEVQFLVLDEADQMLAVGFEEAVEMILKKIPVERQSMLFSAT 1348
VGTPGRIIDL++ N+LKLGEV++LVLDEADQML+ GFEE VE+IL+ +P +RQSMLFSAT
Sbjct: 227 VGTPGRIIDLLKGNSLKLGEVEYLVLDEADQMLSFGFEEDVEVILESLPSKRQSMLFSAT 286
Query: 1347 MPSWVKQISRKYLNSPMTIDLVGNQDEKLAEGIKLYALTSTSTSKRAILSDLVTVYARGG 1168
MP+WVK+++RKYL++P+ IDLVG+++EKLAEGIKLYA+++T+TSKR ILSDLVTVYA+G
Sbjct: 287 MPTWVKKLARKYLDNPLQIDLVGDREEKLAEGIKLYAISTTATSKRTILSDLVTVYAKGE 346
Query: 1167 KTIVFTQTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFNVLVATDVASR 988
KTI+FT+TKRDADEVS+ALT SIASEALHGDISQHQRERTLNGFRQGKF VLVATDVASR
Sbjct: 347 KTIIFTRTKRDADEVSMALTQSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVASR 406
Query: 987 GLDIPNVDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIR 808
GLDIPNVDL +R
Sbjct: 407 GLDIPNVDL---------IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNSQRRTVR 457
Query: 807 SIERDTGCKFEFISPPAVEEVLESSAEQVIATLGGVHPGSVEFFTPTAQKLIDEQGTSAL 628
S+ERD GCKFEF+SPPA+EE+LESS EQV+ATL GVHP SVEFFTPTAQKLI+EQGTSAL
Sbjct: 458 SLERDAGCKFEFVSPPAIEELLESSTEQVVATLNGVHPESVEFFTPTAQKLIEEQGTSAL 517
Query: 627 AAAIAQLSGFSRPPSSRSLISYEQGKVTLQLTRDPEYARGFLSAGGVIGFLSSVYTRAAD 448
AAA+A LSGFSRPPSSRSLIS+EQG TLQLTRDP Y+RGFLSA V GFLS VY AAD
Sbjct: 518 AAALAHLSGFSRPPSSRSLISHEQGWTTLQLTRDPTYSRGFLSARSVTGFLSDVYPAAAD 577
Query: 447 EIGKIHMIADERVQGAVFDLPEEVAKELLDMQIPPGNTISKITKLPALQDDGPVHDNY 274
EIGKIH+IADERVQGAVFDLPEE+AKELL+ Q+PPGNTI KITKLPALQDDGP D Y
Sbjct: 578 EIGKIHLIADERVQGAVFDLPEEIAKELLNKQLPPGNTIEKITKLPALQDDGPPSDFY 635
Score = 110 bits (274), Expect(2) = 0.0
Identities = 56/64 (87%), Positives = 59/64 (92%)
Frame = -1
Query: 1792 LEGKDLIARAKTGTGKTLAFGIPIIKRLTEDDQERGSQRRTSRLPRALVLAPTRELAKQV 1613
LEG+DLIARAKTGTGKTLAFGIPIIKRLTED + RGSQRRT RLP+ LVLAPTRELAKQV
Sbjct: 131 LEGRDLIARAKTGTGKTLAFGIPIIKRLTEDAELRGSQRRTGRLPKVLVLAPTRELAKQV 190
Query: 1612 ENEI 1601
E EI
Sbjct: 191 EKEI 194
>ref|XP_003521635.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like
[Glycine max]
Length = 771
Score = 570 bits (1470), Expect(2) = 0.0
Identities = 298/418 (71%), Positives = 340/418 (81%)
Frame = -2
Query: 1527 VGTPGRIIDLIERNNLKLGEVQFLVLDEADQMLAVGFEEAVEMILKKIPVERQSMLFSAT 1348
VGTPGRIIDLI N+LKL EVQ+LVLDEADQMLAVGFEE VEMIL+ +P +RQSMLFSAT
Sbjct: 241 VGTPGRIIDLINGNSLKLSEVQYLVLDEADQMLAVGFEEDVEMILENLPAQRQSMLFSAT 300
Query: 1347 MPSWVKQISRKYLNSPMTIDLVGNQDEKLAEGIKLYALTSTSTSKRAILSDLVTVYARGG 1168
MPSWVK+++RKYLN+P+TIDLVG+++EKLAEGIKLYA+ +T+TSKR ILSDLVTVYA+GG
Sbjct: 301 MPSWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLYAIAATATSKRTILSDLVTVYAKGG 360
Query: 1167 KTIVFTQTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFNVLVATDVASR 988
KTIVFTQTKRDADEVSL+LTNSI SEALHGDISQHQRERTLNGFRQGKF VLVATDVA+R
Sbjct: 361 KTIVFTQTKRDADEVSLSLTNSIMSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 420
Query: 987 GLDIPNVDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIR 808
GLDIPNVDL +R
Sbjct: 421 GLDIPNVDL---------IIHYELPNDPETFVHRSGRTGRAGKQGNAILLYTSSQRRTVR 471
Query: 807 SIERDTGCKFEFISPPAVEEVLESSAEQVIATLGGVHPGSVEFFTPTAQKLIDEQGTSAL 628
S+ERD GCKFEF+S PA+EEVLESSAEQV+ATLGGVHP SV+FFTPTAQ+LI+EQGTSAL
Sbjct: 472 SLERDVGCKFEFVSAPAMEEVLESSAEQVVATLGGVHPESVQFFTPTAQRLIEEQGTSAL 531
Query: 627 AAAIAQLSGFSRPPSSRSLISYEQGKVTLQLTRDPEYARGFLSAGGVIGFLSSVYTRAAD 448
AAA+AQLSGFSRPPSSRSLI++EQG +TLQLTRD + +R + SA + GFLS VY AAD
Sbjct: 532 AAALAQLSGFSRPPSSRSLITHEQGWITLQLTRDSD-SRRYFSARSITGFLSDVYPAAAD 590
Query: 447 EIGKIHMIADERVQGAVFDLPEEVAKELLDMQIPPGNTISKITKLPALQDDGPVHDNY 274
E+GKIH+IADE+VQGAVFDLPEE+AKELL+ IPPGNT+SKITKLP+LQDDGP D Y
Sbjct: 591 EVGKIHLIADEKVQGAVFDLPEEIAKELLNRDIPPGNTVSKITKLPSLQDDGPPSDFY 648
Score = 97.1 bits (240), Expect(2) = 0.0
Identities = 52/65 (80%), Positives = 56/65 (86%)
Frame = -1
Query: 1795 ALEGKDLIARAKTGTGKTLAFGIPIIKRLTEDDQERGSQRRTSRLPRALVLAPTRELAKQ 1616
ALEG+D+IARAKTGTGKTLAFGIPIIK LTE D+ S RR+ RLPR LVLAPTRELAKQ
Sbjct: 145 ALEGRDIIARAKTGTGKTLAFGIPIIKGLTE-DEHAPSHRRSGRLPRFLVLAPTRELAKQ 203
Query: 1615 VENEI 1601
VE EI
Sbjct: 204 VEKEI 208
>ref|XP_004135577.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like
[Cucumis sativus]
Length = 748
Score = 563 bits (1452), Expect(2) = 0.0
Identities = 292/418 (69%), Positives = 335/418 (80%)
Frame = -2
Query: 1527 VGTPGRIIDLIERNNLKLGEVQFLVLDEADQMLAVGFEEAVEMILKKIPVERQSMLFSAT 1348
VGTPGR+IDLI N+L LGEV++LVLDEADQMLAVGFEE VE+IL+K+P +RQ+MLFSAT
Sbjct: 242 VGTPGRLIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVILEKLPSQRQNMLFSAT 301
Query: 1347 MPSWVKQISRKYLNSPMTIDLVGNQDEKLAEGIKLYALTSTSTSKRAILSDLVTVYARGG 1168
MP+WVK+++RKYL++P+TIDLVG+QDEKLAEGIKL+A+ +T+TSK+ IL DLVTVYA+GG
Sbjct: 302 MPTWVKKLARKYLDNPLTIDLVGDQDEKLAEGIKLHAILTTATSKQTILRDLVTVYAKGG 361
Query: 1167 KTIVFTQTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFNVLVATDVASR 988
KTIVFTQTKRDADEVSLAL NSI SEALHGDISQHQRERTLNGFRQGKF VLVATDVASR
Sbjct: 362 KTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVASR 421
Query: 987 GLDIPNVDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIR 808
GLDIPNVDL +R
Sbjct: 422 GLDIPNVDL---------VIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNSQRRTVR 472
Query: 807 SIERDTGCKFEFISPPAVEEVLESSAEQVIATLGGVHPGSVEFFTPTAQKLIDEQGTSAL 628
S+ERD GCKFEF +PP +EEVL+SSAEQV+ TL GVHP S+E+FTPTAQKLIDEQG AL
Sbjct: 473 SLERDVGCKFEFANPPGMEEVLKSSAEQVVVTLRGVHPESIEYFTPTAQKLIDEQGLGAL 532
Query: 627 AAAIAQLSGFSRPPSSRSLISYEQGKVTLQLTRDPEYARGFLSAGGVIGFLSSVYTRAAD 448
AAA+AQLSGF+ PPSSRSLI++EQG VTLQLTRDP Y+RGFLSA V GFLS VY+ AAD
Sbjct: 533 AAALAQLSGFTHPPSSRSLINHEQGWVTLQLTRDPSYSRGFLSARSVTGFLSDVYSPAAD 592
Query: 447 EIGKIHMIADERVQGAVFDLPEEVAKELLDMQIPPGNTISKITKLPALQDDGPVHDNY 274
EIGKIH+IADER+ GAVFDLPEE+AKELL+ ++P GNTI KITKLP LQDDGP DNY
Sbjct: 593 EIGKIHLIADERINGAVFDLPEEIAKELLNKELPEGNTILKITKLPPLQDDGPPSDNY 650
Score = 103 bits (256), Expect(2) = 0.0
Identities = 54/65 (83%), Positives = 58/65 (89%)
Frame = -1
Query: 1795 ALEGKDLIARAKTGTGKTLAFGIPIIKRLTEDDQERGSQRRTSRLPRALVLAPTRELAKQ 1616
ALEG+DLIARAKTGTGKTLAFGIPI+K+LTEDD+ R S RR SRLPR LVL PTRELAKQ
Sbjct: 146 ALEGRDLIARAKTGTGKTLAFGIPILKKLTEDDESR-SLRRRSRLPRVLVLTPTRELAKQ 204
Query: 1615 VENEI 1601
VE EI
Sbjct: 205 VEKEI 209